Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012746

Physical Location & Seq

Genomic Coordinates Forward (+)

28932633 .. 28935101

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGAAAAGCTACACTTCCATCAGTGTTTTCATTTTCGCTGTCTTCATTCTCTTCTCGGCTGCTTCGTGCTCTGAAGAAGAAGAAATTGAACAAGGTTTAGCTCCAATGGAGAGAACAGAGCAAGAAGCTCTCTACTTAGCTGTTCAAGGCTTTGTGGGCAAATGGTGGAATGGTTCAGACCTCTACCCGGATCCTTGTGGATGGACTCCTATTCAGGGGGTGTCGTGTGATCTCTTCAATGGGCTTTGGTATGTGACAGTTATGAACATTGGACCTGTTCATGACAACTCTCTTAGTTGTTCCCCAAATGCGAAATTCAGACCCCAACTGTTTGATTTGAAGCACATAAAATCTTTGTCCTTTTCCAATTGTTTCATCTCACCACACAAACACCCAATTCAAATCCCTGCTGACAATTGGTGGAGGTTCTCTGAGAGCTTAGAATCACTGCAGTTTCGATCAAATCCCGGTCTTACTGGTCAAATCCCCAGTAGCTTTGGTGGCCTCAGAAAGCTCCAATCTTTGGTGCTAGTAGAGAATGGATTAAATGGTGGGTTACCAAGTAACATTGGAGACTTGGTACAGTTGAAGAGGCTAGTTCTCTCTGGAAACTGGTTTACAGGTCCAATTCCTGATAGTTTTGGTAAATTAAATCAGCTCTTAATCTTTGATTTAAGCCAAAACTCATTACGTGGGCCTTTGCCAAGCACTCTTGGAAGCTTGACTTCACTCTTGAAGCTTGACTTGAGCAACAACTTATTAGGAGGGTCAATTTCTCAAGTGGGTGATCTGAAAAACCTGACCCTTTTGGACCTGAGGAGTAACAATTTCTCTGGTGGGTTGACCCAGTCAATTCAAGAGATGCATACCTTGGAAGAGATGGCATTGTCCAACAACCCAATTGGTGGAGACCTCAATACCTTAGAGTGGCAAAACATGGACAAATTGGTCATTTTGGATCTTTCCAAAACAGGGTTAACAGGGGAGATTCCAGAGTCCATATCAGAGTTAAAGAGGTTGAGGTTTTTGGGTCTAAGTGACAACAAGCTTAGAGGTAACCTCTCACCAAAGCTTGCAACTTTGCCTTGCATTAGTGCACTCTACCTACATGGTAACAACCTCACAGGGGAGCTTAAATTCTCCGAGTCGTTTTACGCAAAAATGGGGAGTCGTTTTGGTGCTTGGAACAACCCTGATCTCTGCTACACTGATGCATTGGTCACAAAGAGCAATGTACCATTTGGGGTCAAGCCATGCCAGGCTGAGGTCACATTGCTTGAATCGAATTCAAAGGCAAAGCTGGAAGATGGTGGTTTGAATCGAAAATCCTACATCACTACTTCTTTGGGATTCTCAAGTCGTGGTGGCATTGATGGGATTTGGTGGCTTGGTGGGTTGCTGCAATTAATAATAGTTCTGTTGTTGAATTGCTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0016020 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

480

Amino Acids

52.59

Weight (kDa)

5.64

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	166 - 380	9e-15	Leucine-rich repeat region
LRR_8	PF13855	195 - 254	4.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13230 AT3G25670
fragaria_vesca	FvH4_4g28250
malus_domestica	MD13G1048600.v1.1 MD16G1049900.v1.1
prunus_persica	Prupe.1G303600_v2.0.a1
pyrus_communis	pycom13g04290 pycom16g04360
rosa_chinensis	RchiOBHm_Chr4g0436111
rosa_laevigata	RLG00000006538
rosa_multiflora	Rmu_sc0006301.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377220
rosa_rugosa	Rorug04G0292100
rosa_samantha	Rh4AG346100 Rh4BG355200 Rh4CG369800 Rh4DG348800
rosa_wichuraiana	Rw4G030250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	947
AccB7I	CCANNNNNTGG	2 cut(s)	523, 905
AclWI	GGATC	3 cut(s)	185, 198, 966
AcsI	RAATTY	3 cut(s)	314, 1136, 1285
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	582, 1236
AfiI	CCNNNNNNNGG	8 cut(s)	187, 215, 523, 905, 927, 972, 1126, 1264
AjnI	CCWGG	1 cut(s)	1257
Alw21I	GWGCWC	2 cut(s)	71, 1099
Alw26I	GTCTC	2 cut(s)	567, 903
Alw44I	GTGCAC	1 cut(s)	1095
AlwI	GGATC	3 cut(s)	185, 198, 966
AoxI	GGCC	2 cut(s)	502, 695
ApaLI	GTGCAC	1 cut(s)	1095
ApeKI	GCWGC	2 cut(s)	59, 1399
ApoI	RAATTY	3 cut(s)	314, 1136, 1285
AseI	ATTAAT	1 cut(s)	1406
Asp700I	GAANNNNTTC	1 cut(s)	1430
AspS9I	GGNCC	4 cut(s)	272, 623, 695, 811
AsuC2I	CCSGG	2 cut(s)	188, 468
AsuHPI	GGTGA	3 cut(s)	372, 797, 1056
AvaII	GGWCC	3 cut(s)	272, 623, 811
AxyI	CCTNAGG	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	1099
BamHI	GGATCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	71, 1099
BbvCI	CCTCAGC	1 cut(s)	1263
BbvI	GCAGC	2 cut(s)	46, 1386
BccI	CCATC	5 cut(s)	26, 195, 874, 1301, 1367
BciT130I	CCWGG	1 cut(s)	1259
BcnI	CCSGG	2 cut(s)	188, 468
BcoDI	GTCTC	2 cut(s)	567, 903
BfaI	CTAG	2 cut(s)	530, 596
BfmI	CTRYAG	1 cut(s)	449
BisI	GCNGC	2 cut(s)	60, 1400
BlsI	GCNGC	2 cut(s)	61, 1401
Bme1390I	CCNGG	3 cut(s)	188, 468, 1259
Bme18I	GGWCC	3 cut(s)	272, 623, 811
BmgT120I	GGNCC	4 cut(s)	272, 623, 695, 811
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	3 cut(s)	188, 468, 1259
BmrI	ACTGGG	2 cut(s)	483, 841
BmsI	GCATC	2 cut(s)	852, 1201
BmuI	ACTGGG	2 cut(s)	483, 841
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	1044, 1076
Bpu10I	CCTNAGC	1 cut(s)	1263
BpuEI	CTTGAG	3 cut(s)	762, 766, 1339
BpuMI	CCSGG	2 cut(s)	188, 468
BsaAI	YACGTR	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	1 cut(s)	870
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	8 cut(s)	187, 215, 523, 905, 927, 972, 1126, 1264
Bse1I	ACTGG	4 cut(s)	481, 489, 617, 847
Bse21I	CCTNAGG	1 cut(s)	815
Bse3DI	GCAATG	2 cut(s)	1237, 1271
BseBI	CCWGG	1 cut(s)	1259
BseDI	CCNNGG	1 cut(s)	870
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	8 cut(s)	187, 215, 523, 905, 927, 972, 1126, 1264
BseMI	GCAATG	2 cut(s)	1237, 1271
BseMII	CTCAG	4 cut(s)	423, 520, 806, 1254
BseNI	ACTGG	4 cut(s)	481, 489, 617, 847
BseRI	GAGGAG	1 cut(s)	832
BseSI	GKGCMC	1 cut(s)	1099
BseXI	GCAGC	2 cut(s)	46, 1386
BshFI	GGCC	2 cut(s)	504, 697
BsiHKAI	GWGCWC	2 cut(s)	71, 1099
BsiSI	CCGG	2 cut(s)	188, 468
BslI	CCNNNNNNNGG	8 cut(s)	187, 215, 523, 905, 927, 972, 1126, 1264
BsmAI	GTCTC	2 cut(s)	567, 903
BsnI	GGCC	2 cut(s)	504, 697
Bso31I	GGTCTC	1 cut(s)	903
Bsp1286I	GDGCHC	2 cut(s)	71, 1099
Bsp143I	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
BspANI	GGCC	2 cut(s)	504, 697
BspCNI	CTCAG	4 cut(s)	424, 519, 807, 1255
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	3 cut(s)	185, 198, 966
BspTNI	GGTCTC	1 cut(s)	903
BsrDI	GCAATG	2 cut(s)	1237, 1271
BsrI	ACTGG	4 cut(s)	481, 489, 617, 847
BssECI	CCNNGG	1 cut(s)	870
BssMI	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
BssT1I	CCWWGG	1 cut(s)	870
Bst2UI	CCWGG	1 cut(s)	1259
Bst4CI	ACNGT	3 cut(s)	259, 330, 585
Bst6I	CTCTTC	4 cut(s)	56, 239, 584, 870
BstBAI	YACGTR	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	1074
BstEII	GGTNACC	2 cut(s)	555, 1055
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	6 cut(s)	193, 232, 461, 790, 961, 1198
BstMAI	GTCTC	2 cut(s)	567, 903
BstMBI	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 501
BstNI	CCWGG	1 cut(s)	1259
BstPI	GGTNACC	2 cut(s)	555, 1055
BstSCI	CCNGG	3 cut(s)	186, 466, 1257
BstSFI	CTRYAG	1 cut(s)	449
BstSLI	GKGCMC	1 cut(s)	1099
BstV1I	GCAGC	2 cut(s)	46, 1386
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	190, 958
BstYI	RGATCY	2 cut(s)	190, 958
Bsu36I	CCTNAGG	1 cut(s)	815
BsuRI	GGCC	2 cut(s)	504, 697
BtsCI	GGATG	1 cut(s)	206
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	28, 446, 1206
Cac8I	GCNNGC	1 cut(s)	1074
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	4 cut(s)	272, 623, 695, 811
Csp6I	GTAC	2 cut(s)	581, 1235
CviAII	CATG	4 cut(s)	281, 937, 1109, 1254
CviQI	GTAC	2 cut(s)	581, 1235
DpnI	GATC	6 cut(s)	192, 231, 460, 789, 960, 1197
DpnII	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
DrdI	GACNNNNNNGTC	1 cut(s)	947
DseDI	GACNNNNNNGTC	1 cut(s)	947
Eam1104I	CTCTTC	4 cut(s)	56, 239, 584, 870
EarI	CTCTTC	4 cut(s)	56, 239, 584, 870
Eco130I	CCWWGG	1 cut(s)	870
Eco31I	GGTCTC	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	272, 623, 811
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	815
Eco91I	GGTNACC	2 cut(s)	555, 1055
EcoO65I	GGTNACC	2 cut(s)	555, 1055
EcoRI	GAATTC	1 cut(s)	1285
EcoRII	CCWGG	1 cut(s)	1257
EcoT14I	CCWWGG	1 cut(s)	870
EcoT22I	ATGCAT	2 cut(s)	867, 1216
ErhI	CCWWGG	1 cut(s)	870
FaeI	CATG	4 cut(s)	284, 940, 1112, 1257
FalI	AAGNNNNNCTT	5 cut(s)	30, 709, 741, 728, 760
FatI	CATG	4 cut(s)	280, 936, 1108, 1253
Fnu4HI	GCNGC	2 cut(s)	60, 1400
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	60, 1400
FspBI	CTAG	2 cut(s)	530, 596
GluI	GCNGC	2 cut(s)	60, 1400
HaeIII	GGCC	2 cut(s)	504, 697
HapII	CCGG	2 cut(s)	188, 468
Hin1II	CATG	4 cut(s)	284, 940, 1112, 1257
HincII	GTYRAC	2 cut(s)	843, 978
HindII	GTYRAC	2 cut(s)	843, 978
HindIII	AAGCTT	4 cut(s)	718, 737, 1046, 1070
HinfI	GANTC	9 cut(s)	205, 443, 988, 995, 1145, 1168, 1280, 1318, 1350
HpaI	GTTAAC	1 cut(s)	978
HpaII	CCGG	2 cut(s)	188, 468
HphI	GGTGA	3 cut(s)	372, 797, 1056
Hpy166II	GTNNAC	4 cut(s)	618, 843, 978, 1097
Hpy188I	TCNGA	8 cut(s)	73, 178, 320, 433, 509, 792, 1006, 1144
Hpy188III	TCNNGA	6 cut(s)	281, 606, 632, 733, 857, 992
Hpy8I	GTNNAC	4 cut(s)	618, 843, 978, 1097
HpyCH4III	ACNGT	3 cut(s)	259, 330, 585
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	7 cut(s)	451, 865, 1076, 1089, 1097, 1214, 1402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 501
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	4 cut(s)	284, 940, 1112, 1257
KspAI	GTTAAC	1 cut(s)	978
Kzo9I	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
LmnI	GCTCC	3 cut(s)	106, 519, 1129
Lsp1109I	GCAGC	2 cut(s)	46, 1386
LweI	GCATC	2 cut(s)	852, 1201
MaeI	CTAG	2 cut(s)	530, 596
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	9 cut(s)	253, 555, 563, 821, 1037, 1055, 1112, 1219, 1267
MalI	GATC	6 cut(s)	192, 231, 460, 789, 960, 1197
MboI	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
MboII	GAAGA	9 cut(s)	34, 43, 86, 89, 92, 226, 601, 887, 1316
MfeI	CAATTG	3 cut(s)	367, 415, 900
MflI	RGATCY	2 cut(s)	190, 958
MhlI	GDGCHC	2 cut(s)	71, 1099
MlyI	GAGTC	4 cut(s)	199, 1004, 1154, 1177
MmeI	TCCRAC	1 cut(s)	915
Mph1103I	ATGCAT	2 cut(s)	867, 1216
MroXI	GAANNNNTTC	1 cut(s)	1430
MseI	TTAA	8 cut(s)	545, 650, 662, 674, 977, 1010, 1134, 1406
MspI	CCGG	2 cut(s)	188, 468
MspR9I	CCNGG	3 cut(s)	188, 468, 1259
MunI	CAATTG	3 cut(s)	367, 415, 900
MvaI	CCWGG	1 cut(s)	1259
MwoI	GCNNNNNNNGC	2 cut(s)	156, 501
NciI	CCSGG	2 cut(s)	188, 468
NdeII	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
NlaIII	CATG	4 cut(s)	284, 940, 1112, 1257
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	4 cut(s)	253, 1037, 1219, 1267
NsiI	ATGCAT	2 cut(s)	867, 1216
PagI	TCATGA	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	1430
PfeI	GAWTC	5 cut(s)	443, 988, 1280, 1318, 1350
PflFI	GACNNNGTC	1 cut(s)	847
PflMI	CCANNNNNTGG	2 cut(s)	523, 905
PkrI	GCNGC	2 cut(s)	61, 1401
PleI	GAGTC	4 cut(s)	199, 1003, 1153, 1176
PpsI	GAGTC	4 cut(s)	199, 1003, 1153, 1176
Ppu21I	YACGTR	1 cut(s)	692
PshBI	ATTAAT	1 cut(s)	1406
Psp6I	CCWGG	1 cut(s)	1257
PspEI	GGTNACC	2 cut(s)	555, 1055
PspGI	CCWGG	1 cut(s)	1257
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	4 cut(s)	272, 623, 695, 811
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	190, 958
PsyI	GACNNNGTC	1 cut(s)	847
RsaI	GTAC	2 cut(s)	582, 1236
RsaNI	GTAC	2 cut(s)	581, 1235
SaqAI	TTAA	8 cut(s)	545, 650, 662, 674, 977, 1010, 1134, 1406
SatI	GCNGC	2 cut(s)	60, 1400
Sau3AI	GATC	6 cut(s)	190, 229, 458, 787, 958, 1195
Sau96I	GGNCC	4 cut(s)	272, 623, 695, 811
SchI	GAGTC	4 cut(s)	199, 1004, 1154, 1177
ScrFI	CCNGG	3 cut(s)	188, 468, 1259
SduI	GDGCHC	2 cut(s)	71, 1099
SfaNI	GCATC	2 cut(s)	852, 1201
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	3 cut(s)	272, 623, 811
SmlI	CTYRAG	3 cut(s)	745, 777, 1354
SmoI	CTYRAG	3 cut(s)	745, 777, 1354
SspMI	CTAG	2 cut(s)	530, 596
StyD4I	CCNGG	3 cut(s)	186, 466, 1257
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	3 cut(s)	259, 330, 585
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	3 cut(s)	457, 1283, 1321
TfiI	GAWTC	5 cut(s)	443, 988, 1280, 1318, 1350
Tru1I	TTAA	8 cut(s)	545, 650, 662, 674, 977, 1010, 1134, 1406
Tru9I	TTAA	8 cut(s)	545, 650, 662, 674, 977, 1010, 1134, 1406
TscAI	CASTG	3 cut(s)	28, 453, 1213
TseFI	GTSAC	4 cut(s)	253, 1037, 1219, 1267
TseI	GCWGC	2 cut(s)	59, 1399
Tsp45I	GTSAC	4 cut(s)	253, 1037, 1219, 1267
TspDTI	ATGAA	7 cut(s)	17, 19, 34, 269, 278, 364, 1423
TspRI	CASTG	3 cut(s)	28, 453, 1213
Tth111I	GACNNNGTC	1 cut(s)	847
Van91I	CCANNNNNTGG	2 cut(s)	523, 905
VneI	GTGCAC	1 cut(s)	1095
VpaK11BI	GGWCC	3 cut(s)	272, 623, 811
VspI	ATTAAT	1 cut(s)	1406
XapI	RAATTY	3 cut(s)	314, 1136, 1285
XmnI	GAANNNNTTC	1 cut(s)	1430
XspI	CTAG	2 cut(s)	530, 596
Zsp2I	ATGCAT	2 cut(s)	867, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.