Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012745

Physical Location & Seq

Genomic Coordinates Reverse (-)

4926486 .. 4928812

Gene Structure 2327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGACGCCAGCAAGGAAGAGGTTAATGAGGGATTTCAAGAGGTTGCAGCAAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACATTATGCTCTGGAATGCTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGCAGTTCTCTGAAGATTATCCCAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTCATCCTAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTCCAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATCCGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGCGAGTACAACAGGAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0010228 GO:0010498 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033523 GO:0033554 GO:0034641 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051603 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

152

Amino Acids

17.28

Weight (kDa)

5.38

Isoelectric Point (pI)

73.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 144	1.3e-53	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14400 AT1G14400 AT2G02760 AT2G02760 AT2G02760 AT2G02760
fragaria_vesca	FvH4_4g31740
rosa_chinensis	RchiOBHm_Chr4g0440341
rosa_laevigata	RLG00000006190
rosa_multiflora	Rmu_sc0001685.1_g000043 Rmu_sc0033827.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381220
rosa_rugosa	Rorug04G0325700
rosa_samantha	Rh4AG376700 Rh4BG389700 Rh4CG404500 Rh4DG383400
rosa_wichuraiana	Rw4G032250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	405
AciI	CCGC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	3 cut(s)	154, 389, 410
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 146
AgsI	TTSAA	2 cut(s)	40, 160
AluBI	AGCT	2 cut(s)	377, 444
AluI	AGCT	2 cut(s)	377, 444
Alw21I	GWGCWC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	3 cut(s)	49, 308, 377
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	61, 295, 364
BccI	CCATC	3 cut(s)	140, 245, 332
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	50, 309, 378
BlsI	GCNGC	3 cut(s)	51, 310, 379
BmgT120I	GGNCC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 146
Bse1I	ACTGG	2 cut(s)	283, 328
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	5 cut(s)	151, 231, 232, 324, 390
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 146
BseNI	ACTGG	2 cut(s)	283, 328
BseXI	GCAGC	3 cut(s)	61, 295, 364
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 146
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp1407I	TGTACA	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	405
BspMAI	CTGCAG	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	283, 328
BssECI	CCNNGG	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	12, 401
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	5 cut(s)	151, 231, 232, 324, 390
BstFNI	CGCG	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	170
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	3 cut(s)	61, 295, 364
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	5 cut(s)	151, 231, 232, 324, 390
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	167, 290
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	12, 401
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	153, 388, 409
CspCI	CAANNNNNGTGG	2 cut(s)	266, 301
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	3 cut(s)	127, 377, 444
CviKI_1	RGCY	3 cut(s)	127, 377, 444
CviQI	GTAC	3 cut(s)	153, 388, 409
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	144
FaiI	YATR	6 cut(s)	101, 119, 142, 246, 300, 314
FatI	CATG	1 cut(s)	140
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	50, 309, 378
FokI	GGATG	5 cut(s)	158, 219, 238, 311, 397
Fsp4HI	GCNGC	3 cut(s)	50, 309, 378
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	3 cut(s)	50, 309, 378
HaeIII	GGCC	1 cut(s)	127
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	181, 354, 373, 384
Hpy188III	TCNNGA	2 cut(s)	40, 106
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	49, 172, 248, 365
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	144
HspAI	GCGC	1 cut(s)	403
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	3 cut(s)	61, 295, 364
MaeI	CTAG	1 cut(s)	457
MaeIII	GTNAC	2 cut(s)	219, 341
MboII	GAAGA	2 cut(s)	31, 194
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	15, 24, 36, 143, 331
MseI	TTAA	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	115
MvnI	CGCG	1 cut(s)	405
NcoI	CCATGG	1 cut(s)	140
NlaIII	CATG	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	219, 341
PaqCI	CACCTGC	1 cut(s)	70
PctI	GAATGC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	51, 310, 379
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	174
RsaI	GTAC	3 cut(s)	154, 389, 410
RsaNI	GTAC	3 cut(s)	153, 388, 409
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	50, 309, 378
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	7 cut(s)	26, 47, 64, 154, 323, 379, 446
SfcI	CTRYAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	65
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	355
TatI	WGTACW	2 cut(s)	387, 408
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	2 cut(s)	174, 290
TseFI	GTSAC	2 cut(s)	219, 341
TseI	GCWGC	3 cut(s)	49, 308, 377
Tsp45I	GTSAC	2 cut(s)	219, 341
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	174, 290
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.