Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012745

Physical Location & Seq

Genomic Coordinates Forward (+)

773645 .. 775902

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGCAAGACCCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGTTATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTTTCAAATTGTCACTGCAGTTTTCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGTTCCATCCAAACATTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAAAACCAATGGAGTCCAATATACGATGTCGCTGCTATACTAACCTCCATTCAGTCATTGCTATGTGATCCTAATCCGAATTCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAGAAGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0010228 GO:0010498 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0033523 GO:0033554 GO:0034641 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051603 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

152

Amino Acids

17.28

Weight (kDa)

5.4

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 144	2.1e-53	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14400 AT1G14400 AT2G02760 AT2G02760 AT2G02760 AT2G02760
fragaria_vesca	FvH4_4g31740
rosa_chinensis	RchiOBHm_Chr4g0440341
rosa_laevigata	RLG00000006190
rosa_multiflora	Rmu_sc0001685.1_g000043 Rmu_sc0033827.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381220
rosa_rugosa	Rorug04G0325700
rosa_samantha	Rh4AG376700 Rh4BG389700 Rh4CG404500 Rh4DG383400
rosa_wichuraiana	Rw4G032250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	405, 426
AciI	CCGC	2 cut(s)	211, 424
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	355, 367
AfaI	GTAC	2 cut(s)	154, 410
AfiI	CCNNNNNNNGG	2 cut(s)	65, 146
AgsI	TTSAA	2 cut(s)	40, 160
AluBI	AGCT	2 cut(s)	377, 444
AluI	AGCT	2 cut(s)	377, 444
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	3 cut(s)	49, 308, 377
ApoI	RAATTY	2 cut(s)	355, 367
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	61, 295, 364
BccI	CCATC	3 cut(s)	140, 240, 245
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	2 cut(s)	63, 170
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	50, 309, 378
BlsI	GCNGC	3 cut(s)	51, 310, 379
BmgT120I	GGNCC	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 146
Bse3DI	GCAATG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	3 cut(s)	151, 231, 232
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	65, 146
BseMI	GCAATG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	61, 295, 364
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	2 cut(s)	405, 426
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	65, 146
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	2 cut(s)	211, 424
BspANI	GGCC	1 cut(s)	127
BspFNI	CGCG	2 cut(s)	405, 426
BspMAI	CTGCAG	2 cut(s)	67, 174
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	14, 412
BstC8I	GCNNGC	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	151, 231, 232
BstFNI	CGCG	2 cut(s)	405, 426
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstSFI	CTRYAG	2 cut(s)	63, 170
BstUI	CGCG	2 cut(s)	405, 426
BstV1I	GCAGC	3 cut(s)	61, 295, 364
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	151, 231, 232
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	3 cut(s)	167, 213, 397
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	401
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	153, 409
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	3 cut(s)	127, 377, 444
CviKI_1	RGCY	3 cut(s)	127, 377, 444
CviQI	GTAC	2 cut(s)	153, 409
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	14, 412
EarI	CTCTTC	2 cut(s)	14, 412
Eco130I	CCWWGG	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	103
FaiI	YATR	8 cut(s)	101, 119, 246, 260, 262, 298, 314, 340
FatI	CATG	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	50, 309, 378
FokI	GGATG	3 cut(s)	158, 219, 238
Fsp4HI	GCNGC	3 cut(s)	50, 309, 378
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	3 cut(s)	50, 309, 378
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	3 cut(s)	7, 289, 420
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	181, 354, 373
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	5 cut(s)	49, 65, 172, 365, 380
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	6 cut(s)	24, 51, 75, 141, 375, 430
Lsp1109I	GCAGC	3 cut(s)	61, 295, 364
MaeI	CTAG	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	3 cut(s)	31, 194, 429
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	4 cut(s)	69, 161, 355, 367
MlyI	GAGTC	2 cut(s)	298, 429
MnlI	CCTC	6 cut(s)	9, 24, 36, 143, 331, 421
MslI	CAYNNNNRTG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	115
MvnI	CGCG	2 cut(s)	405, 426
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	165
PaqCI	CACCTGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	51, 310, 379
PleI	GAGTC	2 cut(s)	297, 428
PpsI	GAGTC	2 cut(s)	297, 428
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	67, 174
RsaI	GTAC	2 cut(s)	154, 410
RsaNI	GTAC	2 cut(s)	153, 409
RseI	CAYNNNNRTG	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	3 cut(s)	50, 309, 378
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	125
SbfI	CCTGCAGG	1 cut(s)	67
SchI	GAGTC	2 cut(s)	298, 429
SdaI	CCTGCAGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	7 cut(s)	47, 64, 154, 323, 379, 432, 446
SfcI	CTRYAG	2 cut(s)	63, 170
SmiMI	CAYNNNNRTG	1 cut(s)	337
Sse8387I	CCTGCAGG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	69, 161, 355, 367
SsiI	CCGC	2 cut(s)	211, 424
SspMI	CTAG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	5, 435
TasI	AATT	4 cut(s)	69, 161, 355, 367
TatI	WGTACW	1 cut(s)	408
TscAI	CASTG	3 cut(s)	174, 213, 397
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	3 cut(s)	49, 308, 377
Tsp45I	GTSAC	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	3 cut(s)	174, 213, 397
XapI	RAATTY	2 cut(s)	355, 367
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.