Rmu_sc0033827.1_g000001

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033827.1
Physical Location & Seq
Forward (+)
3442 .. 4587
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033827.1_g000001.1.cds

Sequence Viewer

Length: 360 bp
atgtcgactcctgcaaggaagagactgatgagggatttcaagaggttgcagcaggaccctcctgctggaataagcggtgctcctcaagacaataatataatgctttggaatgctgttatatttgggcccgatgacaccccgtgggatggaggtacgttcaagttgacacttcaattttccgaggattatccaaataagccaccaacagtgcgttttgtttctcgaatgtttcatccaaacatttatgcggatggaagcatttgtttggacatcctacagaatcagtggagccctatatatgatgtagcagctattcttacttccattcaggtattcgatgttgtttccattgcttggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.49

Weight (kDa)

5.09

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012745)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 354
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 75, 248
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 65, 146, 354
AgsI TTSAA 3 cut(s) 40, 160, 173
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 16
AoxI GGCC 1 cut(s) 125
ApaI GGGCCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 49, 308
AspS9I GGNCC 3 cut(s) 55, 125, 126
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 129
BanII GRGCYC 2 cut(s) 129, 293
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 61, 320
BccI CCATC 2 cut(s) 140, 245
BcoDI GTCTC 1 cut(s) 16
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 50, 309
BlsI GCNGC 2 cut(s) 51, 310
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 55, 125, 126
BmiI GGNNCC 3 cut(s) 57, 127, 290
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 140, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 146, 354
Bse3DI GCAATG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 140, 180
BseGI GGATG 4 cut(s) 151, 232, 256, 270
BseLI CCNNNNNNNGG 3 cut(s) 65, 146, 354
BseMI GCAATG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 2 cut(s) 61, 320
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 65, 146, 354
BsmAI GTCTC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 127
Bsp120I GGGCCC 1 cut(s) 125
Bsp1286I GDGCHC 3 cut(s) 82, 129, 293
BspACI CCGC 2 cut(s) 75, 248
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 57, 127, 290
BsrDI GCAATG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 140, 180
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 151, 232, 256, 270
BstMAI GTCTC 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 61, 320
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 4 cut(s) 151, 232, 256, 270
BtsIMutI CAGTG 2 cut(s) 213, 290
Cfr13I GGNCC 3 cut(s) 55, 125, 126
Csp6I GTAC 1 cut(s) 153
CviJI RGCY 4 cut(s) 127, 199, 291, 311
CviKI_1 RGCY 4 cut(s) 127, 199, 291, 311
CviQI GTAC 1 cut(s) 153
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco24I GRGCYC 2 cut(s) 129, 293
Eco47I GGWCC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 129, 293
FaiI YATR 6 cut(s) 98, 119, 246, 296, 298, 300
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 50, 309
FokI GGATG 4 cut(s) 158, 219, 257, 263
FriOI GRGCYC 2 cut(s) 129, 293
Fsp4HI GCNGC 2 cut(s) 50, 309
GluI GCNGC 2 cut(s) 50, 309
HaeIII GGCC 1 cut(s) 127
HincII GTYRAC 2 cut(s) 6, 165
HindII GTYRAC 2 cut(s) 6, 165
HinfI GANTC 2 cut(s) 7, 280
Hpy166II GTNNAC 2 cut(s) 6, 165
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 40, 86, 222
Hpy8I GTNNAC 2 cut(s) 6, 165
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 14, 49
HpySE526I ACGT 1 cut(s) 155
LmnI GCTCC 2 cut(s) 85, 288
LpnPI CCDG 5 cut(s) 24, 38, 51, 75, 314
Lsp1109I GCAGC 2 cut(s) 61, 320
MaeII ACGT 1 cut(s) 155
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 3 cut(s) 82, 129, 293
MluCI AATT 1 cut(s) 173
MnlI CCTC 6 cut(s) 24, 36, 69, 93, 143, 175
Mva1269I GAATGC 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 57, 127, 290
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 280
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 2 cut(s) 51, 310
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 57, 127, 290
PspOMI GGGCCC 1 cut(s) 125
PspPI GGNCC 3 cut(s) 55, 125, 126
PspPPI RGGWCCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 2 cut(s) 50, 309
Sau96I GGNCC 3 cut(s) 55, 125, 126
SduI GDGCHC 3 cut(s) 82, 129, 293
SetI ASST 5 cut(s) 47, 154, 158, 313, 333
SfcI CTRYAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 173
SsiI CCGC 2 cut(s) 75, 248
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 158
TaqI TCGA 3 cut(s) 5, 223, 336
TasI AATT 1 cut(s) 173
TfiI GAWTC 1 cut(s) 280
TscAI CASTG 2 cut(s) 213, 290
TseI GCWGC 2 cut(s) 49, 308
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 2 cut(s) 213, 290
Van91I CCANNNNNTGG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.