RLG00000006190

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012745
Physical Location & Seq
Forward (+)
5059294 .. 5063331
4038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006190

Sequence Viewer

Length: 552 bp
ATGTTCTTGTCGTTTTATGCGAATGAGCATTCTCCCCTTTGTTGTTACTTCAAATTGCCCAAAGAGCCCTTGGCTATCTACCAGGCGGTGAGGATGTCGACTCCTGCAAGGAAGAGACTGATGAGGGATTTCAAGAGGTTGCAGCAGGACCCTCCTGCTGGCATAAGCGGCGCTCCTCAAGACAATAATATAATGCTTTGGAATGCTGTTATATTTGGGCCCGATGACACCCCGTGGGATGGAGGTACGTTCAAGTTGACACTTCAATTTTCCGAGGATTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTTTCATCCAAACATTTATGCGGATGGAAGCATTTGTTTGGACATCCTACAGAATCAGTGGAGCCCTATATATGATGTAGCAGCTATACTTACTTCCATTCAGTCATTGCTGTGTGATCCAAACCCGAACTCTCCAGCAAATTCAGAAGCTGCACGTATGTTCAGCGAAAACAAACGTGAATACAACAGAAGAGTCCGTGAGATTGTTGAGCAGAGTTGGACTGCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

184

Amino Acids

21.0

Weight (kDa)

6.13

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 39 - 175 9.7e-54 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012745)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14400 AT1G14400 AT2G02760 AT2G02760 AT2G02760 AT2G02760
fragaria_vesca FvH4_4g31740
rosa_chinensis RchiOBHm_Chr4g0440341
rosa_laevigata RLG00000006190
rosa_multiflora Rmu_sc0001685.1_g000043 Rmu_sc0033827.1_g000001
rosa_roxburghii Rroxscaffold_5G00381220
rosa_rugosa Rorug04G0325700
rosa_samantha Rh4AG376700 Rh4BG389700 Rh4CG404500 Rh4DG383400
rosa_wichuraiana Rw4G032250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 98
AciI CCGC 3 cut(s) 86, 168, 341
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 1 cut(s) 460
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 158, 239
AgsI TTSAA 4 cut(s) 52, 133, 253, 266
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 2 cut(s) 404, 470
AluI AGCT 2 cut(s) 404, 470
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 1 cut(s) 218
ApaI GGGCCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 142, 401, 470
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 2 cut(s) 173, 306
AspS9I GGNCC 3 cut(s) 148, 218, 219
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 222
BanII GRGCYC 3 cut(s) 69, 222, 386
BbvI GCAGC 3 cut(s) 154, 413, 457
BccI CCATC 2 cut(s) 233, 338
BciT130I CCWGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 4 cut(s) 143, 169, 402, 471
BlsI GCNGC 4 cut(s) 144, 170, 403, 472
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 148, 218, 219
BmiI GGNNCC 3 cut(s) 150, 220, 383
BmrFI CCNGG 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 476
BsaJI CCNNGG 3 cut(s) 69, 233, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 239
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 69, 233, 273
BseGI GGATG 5 cut(s) 99, 244, 325, 349, 363
BseLI CCNNNNNNNGG 2 cut(s) 158, 239
BseMI GCAATG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 3 cut(s) 154, 413, 457
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 158, 239
BsmAI GTCTC 1 cut(s) 109
BsmI GAATGC 2 cut(s) 28, 208
BsnI GGCC 1 cut(s) 220
Bsp120I GGGCCC 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 69, 222, 386
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 3 cut(s) 86, 168, 341
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 3 cut(s) 150, 220, 383
BspPI GGATC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 425
BssECI CCNNGG 3 cut(s) 69, 233, 273
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 2 cut(s) 107, 505
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 5 cut(s) 99, 244, 325, 349, 363
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 173, 306
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 2 cut(s) 64, 168
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 368
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 154, 413, 457
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 5 cut(s) 99, 244, 325, 349, 363
BtsIMutI CAGTG 2 cut(s) 306, 383
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 470
CfoI GCGC 2 cut(s) 173, 306
Cfr13I GGNCC 3 cut(s) 148, 218, 219
Csp6I GTAC 1 cut(s) 246
CviJI RGCY 7 cut(s) 67, 74, 220, 292, 384, 404, 470
CviKI_1 RGCY 7 cut(s) 67, 74, 220, 292, 384, 404, 470
CviQI GTAC 1 cut(s) 246
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 107, 505
EarI CTCTTC 2 cut(s) 107, 505
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 3 cut(s) 69, 222, 386
Eco47I GGWCC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 3 cut(s) 69, 222, 386
ErhI CCWWGG 1 cut(s) 69
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 4 cut(s) 143, 169, 402, 471
FokI GGATG 5 cut(s) 106, 251, 312, 350, 356
FriOI GRGCYC 3 cut(s) 69, 222, 386
Fsp4HI GCNGC 4 cut(s) 143, 169, 402, 471
GlaI GCGC 2 cut(s) 172, 305
GluI GCNGC 4 cut(s) 143, 169, 402, 471
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 1 cut(s) 220
HhaI GCGC 2 cut(s) 173, 306
Hin6I GCGC 2 cut(s) 171, 304
HinP1I GCGC 2 cut(s) 171, 304
HincII GTYRAC 2 cut(s) 99, 258
HindII GTYRAC 2 cut(s) 99, 258
HinfI GANTC 3 cut(s) 100, 373, 513
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 99, 258
Hpy188I TCNGA 2 cut(s) 274, 466
Hpy188III TCNNGA 3 cut(s) 133, 179, 315
Hpy8I GTNNAC 2 cut(s) 99, 258
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 3 cut(s) 248, 475, 496
HpyCH4V TGCA 3 cut(s) 107, 142, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 168
HpySE526I ACGT 3 cut(s) 248, 475, 496
HspAI GCGC 2 cut(s) 171, 304
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 2 cut(s) 178, 381
LpnPI CCDG 7 cut(s) 68, 95, 117, 131, 144, 168, 468
Lsp1109I GCAGC 3 cut(s) 154, 413, 457
MaeII ACGT 3 cut(s) 248, 475, 496
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 2 cut(s) 124, 522
MhlI GDGCHC 3 cut(s) 69, 222, 386
MluCI AATT 3 cut(s) 53, 266, 460
MlyI GAGTC 2 cut(s) 94, 522
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 7 cut(s) 84, 117, 129, 162, 186, 236, 268
MslI CAYNNNNRTG 1 cut(s) 430
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 2 cut(s) 28, 208
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 64, 168
NdeII GATC 1 cut(s) 436
NlaIV GGNNCC 3 cut(s) 150, 220, 383
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PctI GAATGC 2 cut(s) 28, 208
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 4 cut(s) 144, 170, 403, 472
PleI GAGTC 2 cut(s) 94, 521
PpsI GAGTC 2 cut(s) 94, 521
Ppu21I YACGTR 1 cut(s) 476
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 150, 220, 383
PspOMI GGGCCC 1 cut(s) 218
PspPI GGNCC 3 cut(s) 148, 218, 219
PspPPI RGGWCCY 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 470
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 430
SalI GTCGAC 1 cut(s) 97
SatI GCNGC 4 cut(s) 143, 169, 402, 471
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 3 cut(s) 148, 218, 219
SchI GAGTC 2 cut(s) 94, 522
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 3 cut(s) 69, 222, 386
SetI ASST 7 cut(s) 140, 247, 251, 406, 472, 478, 499
SfcI CTRYAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 3 cut(s) 53, 266, 460
SsiI CCGC 3 cut(s) 86, 168, 341
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 3 cut(s) 251, 478, 499
TaqI TCGA 2 cut(s) 98, 316
TasI AATT 3 cut(s) 53, 266, 460
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 373
TscAI CASTG 2 cut(s) 306, 383
TseI GCWGC 3 cut(s) 142, 401, 470
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 2 cut(s) 306, 383
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.