AT1G14590

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015842
Physical Location & Seq
Reverse (-)
4998767 .. 5000710
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14590.1

Sequence Viewer

Length: 1161 bp
ATGAATCTATCTCACCGTGTCGGTTCGAGATTCCACACGGCGAGCCTCGAGGCTTCGTCTTCAGCTAATAATCCCTTCGCCGAGGGTTCCGGCGAGATGTCTCCGGGACCATCAATCCCGCTCCGCCGAGCTGCTCTATTTCTAGCTGCCATCTCCATCTCCTGCTTCGTCCTTTACAGAGCCGCTGATTCCTTGTCTTTCTCCCCTCCCATTTTCGATCTCTCTTCTTATCTGGATAATGAGGAACCTAAGCTAGAAGATGTTCTGAGTAAAGCTGCAACGAGAGACAGGACAGTTGTTTTGACAACTTTGAATGCAGCATGGGCAGCTCCAGGATCTGTTATTGATCTCTTCTTTGAGAGTTTTAGAATTGGGGAAGAAACTAGTCAAATCTTGGATCATTTGGTGATTGTTGCATTGGATGCTAAGGCTTATTCGCGTTGCTTAGAACTGCATAAGCATTGTTTCAGTCTTGTTACGGAAGGAGTTGATTTTTCCAGAGAAGCTTATTTTATGACTCGGTCTTACTTGAAGATGATGTGGAGAAGGATTGATCTCCTAAGGTCTGTTCTCGAGATGGGATACAATTTTGTTTTCACGGATGCTGATGTGATGTGGTTCAGGAACCCGTTTCCACGGTTTTACATGTATGCAGATTTCCAGATTGCTTGCGATCATTACCTCGGAAGATCAAACGACCTACATAATAGACCAAACGGAGGGTTTAACTTTGTGCGGTCCAACAATCGAACTATACTTTTCTACAAATACTGGTATGCTTCAAGACTCAGATTCCCGGGATATCATGATCAGGATGTGCTTAACTTTCTCAAGGCAGAACCTTTTGTTTTCCGGATTGGGTTAAAGATGAGATTCTTGAACACTGCTTATTTCGGCGGTTTATGTGAGCCTAGCAGAGATCTGAACTTGGTTCGTACAATGCATGCCAATTGCTGCTACGGTATGGAGAGTAAGCTTCATGATCTCAGAATCATGCTTCAAGATTGGAAAGATTTCATGTCTTTACCACTTCATCTAAAACAATCTTCTGGTTTCTCCTGGAAAGTCCCTCAGAATTGCAGTCTTGATTCTCTTCGACGCTATGATGAATCTGTGGAGGATGATGAAGAGAGTGATCCACCAGGAGAATCTCAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

386

Amino Acids

44.41

Weight (kDa)

5.91

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 131 - 329 1.9e-73 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14590
fragaria_vesca FvH4_4g36010
malus_domestica MD16G1009800.v1.1
prunus_persica Prupe.1G340800_v2.0.a1
pyrus_communis pycom16g00960
rosa_chinensis RchiOBHm_Chr4g0445641
rosa_laevigata RLG00000005722
rosa_multiflora Rmu_sc0003637.1_g000023 Rmu_sc0019383.1_g000003
rosa_roxburghii Rroxscaffold_5G00386120
rosa_rugosa Rorug04G0363600
rosa_samantha Rh4AG425200 Rh4CG451500 Rh4DG433500
rosa_wichuraiana Rw4G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 47
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 1 cut(s) 439
AccIII TCCGGA 1 cut(s) 852
AciI CCGC 5 cut(s) 119, 124, 183, 736, 897
AclWI GGATC 3 cut(s) 343, 405, 1130
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 937
AfiI CCNNNNNNNGG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 5 cut(s) 313, 532, 783, 880, 1001
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 3 cut(s) 331, 1058, 1141
AluBI AGCT 8 cut(s) 65, 131, 146, 253, 275, 329, 506, 976
AluI AGCT 8 cut(s) 65, 131, 146, 253, 275, 329, 506, 976
Alw26I GTCTC 2 cut(s) 105, 279
AlwI GGATC 3 cut(s) 343, 405, 1130
AlwNI CAGNNNCTG 1 cut(s) 338
Ama87I CYCGRG 3 cut(s) 47, 572, 796
Aor13HI TCCGGA 1 cut(s) 852
ApeKI GCWGC 6 cut(s) 131, 146, 275, 317, 326, 954
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
Asp700I GAANNNNTTC 2 cut(s) 261, 1013
AspS9I GGNCC 2 cut(s) 107, 738
AsuC2I CCSGG 3 cut(s) 105, 797, 798
AsuHPI GGTGA 2 cut(s) 5, 418
AvaI CYCGRG 3 cut(s) 47, 572, 796
AvaII GGWCC 2 cut(s) 107, 738
AxyI CCTNAGG 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 6 cut(s) 118, 133, 262, 329, 338, 941
BccI CCATC 4 cut(s) 118, 158, 164, 571
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 3 cut(s) 333, 1060, 1143
BciVI GTATCC 1 cut(s) 575
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 3 cut(s) 105, 797, 798
BcoDI GTCTC 2 cut(s) 105, 279
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 4 cut(s) 143, 254, 384, 912
BfuI GTATCC 1 cut(s) 575
BglII AGATCT 1 cut(s) 919
BisI GCNGC 7 cut(s) 132, 147, 183, 276, 318, 327, 955
BlsI GCNGC 7 cut(s) 133, 148, 184, 277, 319, 328, 956
Bme1390I CCNGG 6 cut(s) 105, 333, 797, 798, 1060, 1143
Bme18I GGWCC 2 cut(s) 107, 738
BmeT110I CYCGRG 3 cut(s) 47, 572, 796
BmgT120I GGNCC 2 cut(s) 107, 738
BmiI GGNNCC 4 cut(s) 88, 108, 246, 626
BmrFI CCNGG 6 cut(s) 105, 333, 797, 798, 1060, 1143
BmsI GCATC 2 cut(s) 412, 592
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 2 cut(s) 249, 426
BpuEI CTTGAG 2 cut(s) 815, 1137
BpuMI CCSGG 3 cut(s) 105, 797, 798
BsaJI CCNNGG 4 cut(s) 81, 635, 682, 796
BsaWI WCCGGW 1 cut(s) 852
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 776
Bse21I CCTNAGG 1 cut(s) 560
BseAI TCCGGA 1 cut(s) 852
BseBI CCWGG 3 cut(s) 333, 1060, 1143
BseDI CCNNGG 4 cut(s) 81, 635, 682, 796
BseGI GGATG 4 cut(s) 427, 607, 820, 1126
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMII CTCAG 4 cut(s) 257, 802, 1000, 1085
BseNI ACTGG 1 cut(s) 776
BseXI GCAGC 6 cut(s) 118, 133, 262, 329, 338, 941
Bsh1236I CGCG 1 cut(s) 439
BsiHKCI CYCGRG 3 cut(s) 47, 572, 796
BsiSI CCGG 4 cut(s) 90, 104, 797, 853
BslFI GGGAC 2 cut(s) 120, 1052
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 2 cut(s) 105, 279
BsmFI GGGAC 2 cut(s) 120, 1052
BsmI GAATGC 1 cut(s) 319
BsoBI CYCGRG 3 cut(s) 47, 572, 796
Bsp13I TCCGGA 1 cut(s) 852
BspACI CCGC 5 cut(s) 119, 124, 183, 736, 897
BspCNI CTCAG 4 cut(s) 258, 801, 999, 1084
BspEI TCCGGA 1 cut(s) 852
BspFNI CGCG 1 cut(s) 439
BspHI TCATGA 2 cut(s) 805, 979
BspLI GGNNCC 4 cut(s) 88, 108, 246, 626
BspPI GGATC 3 cut(s) 343, 405, 1130
BsrBI CCGCTC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 776
BssECI CCNNGG 4 cut(s) 81, 635, 682, 796
Bst2UI CCWGG 3 cut(s) 333, 1060, 1143
Bst4CI ACNGT 4 cut(s) 17, 295, 639, 962
Bst6I CTCTTC 4 cut(s) 229, 356, 1098, 1122
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 43, 670, 945
BstDEI CTNAG 8 cut(s) 249, 266, 426, 445, 560, 788, 986, 1071
BstDSI CCRYGG 1 cut(s) 635
BstF5I GGATG 4 cut(s) 427, 607, 820, 1126
BstFNI CGCG 1 cut(s) 439
BstMAI GTCTC 2 cut(s) 105, 279
BstMWI GCNNNNNNNGC 3 cut(s) 323, 326, 422
BstNI CCWGG 3 cut(s) 333, 1060, 1143
BstNSI RCATGY 2 cut(s) 649, 947
BstSCI CCNGG 6 cut(s) 103, 331, 795, 796, 1058, 1141
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 6 cut(s) 118, 133, 262, 329, 338, 941
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 335, 919
BstYI RGATCY 2 cut(s) 335, 919
Bsu36I CCTNAGG 1 cut(s) 560
BsuI GTATCC 1 cut(s) 575
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 4 cut(s) 427, 607, 820, 1126
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 3 cut(s) 43, 670, 945
CaiI CAGNNNCTG 1 cut(s) 338
CciI TCATGA 2 cut(s) 805, 979
Cfr13I GGNCC 2 cut(s) 107, 738
Cfr9I CCCGGG 1 cut(s) 796
CseI GACGC 1 cut(s) 1107
Csp6I GTAC 1 cut(s) 936
CviAII CATG 7 cut(s) 321, 646, 806, 944, 980, 994, 1018
CviQI GTAC 1 cut(s) 936
DdeI CTNAG 8 cut(s) 249, 266, 426, 445, 560, 788, 986, 1071
Eam1104I CTCTTC 4 cut(s) 229, 356, 1098, 1122
EarI CTCTTC 4 cut(s) 229, 356, 1098, 1122
EciI GGCGGA 1 cut(s) 113
Eco32I GATATC 1 cut(s) 803
Eco47I GGWCC 2 cut(s) 107, 738
Eco57I CTGAAG 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 560
Eco88I CYCGRG 3 cut(s) 47, 572, 796
EcoRII CCWGG 3 cut(s) 331, 1058, 1141
EcoRV GATATC 1 cut(s) 803
EcoT22I ATGCAT 1 cut(s) 945
FaeI CATG 7 cut(s) 324, 649, 809, 947, 983, 997, 1021
FaqI GGGAC 2 cut(s) 120, 1052
FatI CATG 7 cut(s) 320, 645, 805, 943, 979, 993, 1017
FauI CCCGC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 7 cut(s) 132, 147, 183, 276, 318, 327, 955
FokI GGATG 4 cut(s) 434, 614, 827, 1133
Fsp4HI GCNGC 7 cut(s) 132, 147, 183, 276, 318, 327, 955
FspBI CTAG 4 cut(s) 143, 254, 384, 912
GluI GCNGC 7 cut(s) 132, 147, 183, 276, 318, 327, 955
GsuI CTGGAG 1 cut(s) 315
HapII CCGG 4 cut(s) 90, 104, 797, 853
HgaI GACGC 1 cut(s) 1107
Hin1II CATG 7 cut(s) 324, 649, 809, 947, 983, 997, 1021
HindIII AAGCTT 2 cut(s) 504, 974
HpaII CCGG 4 cut(s) 90, 104, 797, 853
HphI GGTGA 2 cut(s) 5, 418
Hpy188I TCNGA 6 cut(s) 267, 686, 791, 924, 989, 1074
Hpy99I CGWCG 1 cut(s) 1101
HpyAV CCTTC 3 cut(s) 85, 476, 540
HpyCH4III ACNGT 4 cut(s) 17, 295, 639, 962
HpyCH4V TGCA 7 cut(s) 278, 317, 416, 454, 653, 943, 1080
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 326, 422
HpyF3I CTNAG 8 cut(s) 249, 266, 426, 445, 560, 788, 986, 1071
Hsp92II CATG 7 cut(s) 324, 649, 809, 947, 983, 997, 1021
Kpn2I TCCGGA 1 cut(s) 852
Ksp22I TGATCA 1 cut(s) 808
LmnI GCTCC 2 cut(s) 126, 334
Lsp1109I GCAGC 6 cut(s) 118, 133, 262, 329, 338, 941
LweI GCATC 2 cut(s) 412, 592
MaeI CTAG 4 cut(s) 143, 254, 384, 912
MaeIII GTNAC 1 cut(s) 475
MbiI CCGCTC 1 cut(s) 121
MfeI CAATTG 1 cut(s) 949
MflI RGATCY 2 cut(s) 335, 919
MluCI AATT 4 cut(s) 369, 586, 949, 1075
MlyI GAGTC 2 cut(s) 511, 780
MmeI TCCRAC 1 cut(s) 765
MnlI CCTC 9 cut(s) 43, 56, 76, 216, 235, 692, 713, 1080, 1111
Mph1103I ATGCAT 1 cut(s) 945
MroI TCCGGA 1 cut(s) 852
MroXI GAANNNNTTC 2 cut(s) 261, 1013
MseI TTAA 3 cut(s) 726, 822, 863
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 4 cut(s) 90, 104, 797, 853
MspR9I CCNGG 6 cut(s) 105, 333, 797, 798, 1060, 1143
MunI CAATTG 1 cut(s) 949
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 3 cut(s) 333, 1060, 1143
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 3 cut(s) 323, 326, 422
NciI CCSGG 3 cut(s) 105, 797, 798
NlaIII CATG 7 cut(s) 324, 649, 809, 947, 983, 997, 1021
NlaIV GGNNCC 4 cut(s) 88, 108, 246, 626
NmeAIII GCCGAG 2 cut(s) 106, 152
NsiI ATGCAT 1 cut(s) 945
NspI RCATGY 2 cut(s) 649, 947
PaeI GCATGC 1 cut(s) 947
PaeR7I CTCGAG 2 cut(s) 47, 572
PagI TCATGA 2 cut(s) 805, 979
PciI ACATGT 1 cut(s) 645
PctI GAATGC 1 cut(s) 319
PdmI GAANNNNTTC 2 cut(s) 261, 1013
PfeI GAWTC 9 cut(s) 4, 30, 188, 792, 873, 990, 1088, 1109, 1148
PflFI GACNNNGTC 1 cut(s) 520
PfoI TCCNGGA 3 cut(s) 103, 331, 1058
PkrI GCNGC 7 cut(s) 133, 148, 184, 277, 319, 328, 956
PleI GAGTC 2 cut(s) 511, 780
PpsI GAGTC 2 cut(s) 511, 780
PscI ACATGT 1 cut(s) 645
Psp6I CCWGG 3 cut(s) 331, 1058, 1141
PspGI CCWGG 3 cut(s) 331, 1058, 1141
PspN4I GGNNCC 4 cut(s) 88, 108, 246, 626
PspPI GGNCC 2 cut(s) 107, 738
PspXI VCTCGAGB 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 2 cut(s) 335, 919
PsyI GACNNNGTC 1 cut(s) 520
RsaI GTAC 1 cut(s) 937
RsaNI GTAC 1 cut(s) 936
SaqAI TTAA 3 cut(s) 726, 822, 863
SatI GCNGC 7 cut(s) 132, 147, 183, 276, 318, 327, 955
Sau96I GGNCC 2 cut(s) 107, 738
SchI GAGTC 2 cut(s) 511, 780
ScrFI CCNGG 6 cut(s) 105, 333, 797, 798, 1060, 1143
SfaNI GCATC 2 cut(s) 412, 592
Sfr274I CTCGAG 2 cut(s) 47, 572
SinI GGWCC 2 cut(s) 107, 738
SlaI CTCGAG 2 cut(s) 47, 572
SmaI CCCGGG 1 cut(s) 798
SmlI CTYRAG 4 cut(s) 47, 572, 830, 1152
SmoI CTYRAG 4 cut(s) 47, 572, 830, 1152
SpeI ACTAGT 1 cut(s) 383
SphI GCATGC 1 cut(s) 947
Sse9I AATT 4 cut(s) 369, 586, 949, 1075
SsiI CCGC 5 cut(s) 119, 124, 183, 736, 897
SspMI CTAG 4 cut(s) 143, 254, 384, 912
StyD4I CCNGG 6 cut(s) 103, 331, 795, 796, 1058, 1141
TaaI ACNGT 4 cut(s) 17, 295, 639, 962
TaqI TCGA 6 cut(s) 26, 48, 216, 573, 748, 1096
TaqII GACCGA 1 cut(s) 510
TasI AATT 4 cut(s) 369, 586, 949, 1075
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 9 cut(s) 4, 30, 188, 792, 873, 990, 1088, 1109, 1148
Tru1I TTAA 3 cut(s) 726, 822, 863
Tru9I TTAA 3 cut(s) 726, 822, 863
TscAI CASTG 1 cut(s) 889
TseI GCWGC 6 cut(s) 131, 146, 275, 317, 326, 954
TspDTI ATGAA 6 cut(s) 17, 968, 1006, 1022, 1122, 1140
TspGWI ACGGA 3 cut(s) 494, 614, 732
TspMI CCCGGG 1 cut(s) 796
TspRI CASTG 1 cut(s) 889
Tth111I GACNNNGTC 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 107, 738
XceI RCATGY 2 cut(s) 649, 947
XhoI CTCGAG 2 cut(s) 47, 572
XmaI CCCGGG 1 cut(s) 796
XmnI GAANNNNTTC 2 cut(s) 261, 1013
XspI CTAG 4 cut(s) 143, 254, 384, 912
Zsp2I ATGCAT 1 cut(s) 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.