MD16G1009800.v1.1

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015842
Physical Location & Seq
Reverse (-)
765704 .. 768108
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1009800.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGCGGCCGCACCGGAGGCGTCTACCGGCGATGACGCGCCGCACATCGACCATTAACTCCTCCGCCTCCGACATGCCTGAATCCGTTGTCCTCATCCGCCGGTTTCTCTTATTTGTGGCGGTCTGTCTCTCCTGCCTGCTCCTCTACAACGACTCCAATGCCCTCCGATTTCTCCACCGTTTCTCTTCCTCTCCCTCCGCCTCCTTCTCCTCCTACCTTTCCCCTCTCGTTAGCGAGGAACATAGGCTTGAAAAGGTTTTAAAGAATGCTACCATGGAAGACGGCACTGTGATTTTAACAACTTTGAATGAAGCATGGGCAGCTCCCGGCTCGATCCTCGATCTCTTTCTGGAGAGCTTTAGGATTGGAGTTGGAACTCATAGGCTATTGAACCATTTGGTGATCATTGCCTTGGATCAAAGGGCATTTGAGCGTTGTTTGGAGGTGCATAACCATTGCTTTGCTCTTGTCATTCAAGACTTTGATTTTCGTCAGGAGGCTTATTTTATGACCCCTCACTACTTGAAGATGATGTGGGCAAGGATCGATTTTCTGCGCTCTGTTCTTGAGATGGGCTACAATTTCGTTTTCACGGATGCTGATATTATGTGGTTCAGGGATCCGTTTCCACAGTTTTATGAGGATGCAGATTTTCAGATTGCATGCGATAATTTCTTAGGCAACTCGGACGATTTACAGAACAGACCGAATGGAGGGTTTAACTATGTAAAGTCCAATAGCAGGTCAATAGCGTTCTACAAATTTTGGTATTCCTCGCGGGAAACCTACCCTGGGTTCCATGATCAGGATGTCCTCAATATTATTAAGTTTGATCCAACCACCTTTAGTATCGGACTGAAAATAAAATTTTTGGATACGGCTTACTTTGGTGGATTTTGTGAACCCAGTAAAGATTTGAATCAAGTTTGTACAATGCATGCAAATTGTTGTTATGGTCTAGATAGCAAGCTTCACGACCTTAGAATCATGGTTCGGAATTGGAAGCGATTTGTGTCCTTGCCGCCAGATTTGAAGAGAGATTTGATGTTACCATGGGGCGTTCCGCAGAACTGCAGCCTCGACTCTCTCCGTCACTCTGATGCACTGGAGAGCGATGCTCAACATGGTTCACAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

380

Amino Acids

43.85

Weight (kDa)

6.23

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 129 - 327 1.9e-69 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14590
fragaria_vesca FvH4_4g36010
malus_domestica MD16G1009800.v1.1
prunus_persica Prupe.1G340800_v2.0.a1
pyrus_communis pycom16g00960
rosa_chinensis RchiOBHm_Chr4g0445641
rosa_laevigata RLG00000005722
rosa_multiflora Rmu_sc0003637.1_g000023 Rmu_sc0019383.1_g000003
rosa_roxburghii Rroxscaffold_5G00386120
rosa_rugosa Rorug04G0363600
rosa_samantha Rh4AG425200 Rh4CG451500 Rh4DG433500
rosa_wichuraiana Rw4G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 22
AccII CGCG 2 cut(s) 37, 778
AclWI GGATC 6 cut(s) 328, 423, 551, 614, 627, 827
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 2 cut(s) 761, 866
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 1 cut(s) 931
AfiI CCNNNNNNNGG 4 cut(s) 713, 741, 792, 805
AgsI TTSAA 7 cut(s) 251, 307, 391, 476, 526, 919, 1033
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 3 cut(s) 323, 357, 970
AluI AGCT 3 cut(s) 323, 357, 970
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 6 cut(s) 328, 423, 551, 614, 627, 827
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 320, 1074
ApoI RAATTY 2 cut(s) 761, 866
AspLEI GCGC 2 cut(s) 39, 558
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 412
BamHI GGATCC 1 cut(s) 619
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 332, 1086
BccI CCATC 1 cut(s) 565
BceAI ACGGC 2 cut(s) 298, 894
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 2 cut(s) 402, 802
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 959
BfmI CTRYAG 1 cut(s) 1072
BfuAI ACCTGC 1 cut(s) 732
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 6 cut(s) 5, 8, 40, 321, 1022, 1075
BlsI GCNGC 6 cut(s) 6, 9, 41, 322, 1023, 1076
Bme1390I CCNGG 2 cut(s) 327, 792
BmiI GGNNCC 2 cut(s) 621, 797
BmrFI CCNGG 2 cut(s) 327, 792
BmrI ACTGGG 1 cut(s) 900
BmsI GCATC 4 cut(s) 586, 634, 1090, 1105
BmuI ACTGGG 1 cut(s) 900
BpiI GAAGAC 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 1102, 1134
BpmI CTGGAG 2 cut(s) 371, 1127
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 5 cut(s) 273, 411, 790, 791, 1052
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 4 cut(s) 713, 741, 792, 805
Bse118I RCCGGY 2 cut(s) 25, 99
Bse1I ACTGG 2 cut(s) 906, 1110
Bse3DI GCAATG 2 cut(s) 405, 454
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 1 cut(s) 792
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 5 cut(s) 273, 411, 790, 791, 1052
BseGI GGATG 4 cut(s) 93, 601, 649, 814
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 4 cut(s) 713, 741, 792, 805
BseMI GCAATG 2 cut(s) 405, 454
BseNI ACTGG 2 cut(s) 906, 1110
BseRI GAGGAG 3 cut(s) 49, 131, 199
BseX3I CGGCCG 1 cut(s) 5
BseXI GCAGC 2 cut(s) 332, 1086
Bsh1236I CGCG 2 cut(s) 37, 778
Bsh1285I CGRYCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 7
BshVI ATCGAT 1 cut(s) 546
BsiEI CGRYCG 1 cut(s) 8
BsiSI CCGG 4 cut(s) 13, 26, 100, 327
BslI CCNNNNNNNGG 4 cut(s) 713, 741, 792, 805
BsmAI GTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 7
Bsp1407I TGTACA 1 cut(s) 929
Bsp143I GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
Bsp19I CCATGG 2 cut(s) 273, 1052
BspANI GGCC 1 cut(s) 7
BspDI ATCGAT 1 cut(s) 546
BspFNI CGCG 2 cut(s) 37, 778
BspLI GGNNCC 2 cut(s) 621, 797
BspMAI CTGCAG 1 cut(s) 1076
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 6 cut(s) 328, 423, 551, 614, 627, 827
BsrDI GCAATG 2 cut(s) 405, 454
BsrFI RCCGGY 2 cut(s) 25, 99
BsrGI TGTACA 1 cut(s) 929
BsrI ACTGG 2 cut(s) 906, 1110
BssAI RCCGGY 2 cut(s) 25, 99
BssECI CCNNGG 5 cut(s) 273, 411, 790, 791, 1052
BssMI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 3 cut(s) 273, 411, 1052
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 179, 289, 633
Bst6I CTCTTC 2 cut(s) 190, 1028
BstACI GRCGYC 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 929
BstC8I GCNNGC 4 cut(s) 137, 664, 939, 968
BstDEI CTNAG 2 cut(s) 676, 980
BstDSI CCRYGG 2 cut(s) 273, 1052
BstF5I GGATG 4 cut(s) 93, 601, 649, 814
BstFNI CGCG 2 cut(s) 37, 778
BstHHI GCGC 2 cut(s) 39, 558
BstKTI GATC 8 cut(s) 336, 343, 405, 418, 546, 622, 805, 835
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 16, 320
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 3 cut(s) 76, 666, 941
BstSCI CCNGG 2 cut(s) 325, 790
BstSFI CTRYAG 1 cut(s) 1072
BstUI CGCG 2 cut(s) 37, 778
BstV1I GCAGC 2 cut(s) 332, 1086
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BstZI CGGCCG 1 cut(s) 5
Bsu15I ATCGAT 1 cut(s) 546
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 1 cut(s) 7
BsuTUI ATCGAT 1 cut(s) 546
BtgI CCRYGG 2 cut(s) 273, 1052
BtgZI GCGATG 2 cut(s) 44, 1128
BtsCI GGATG 4 cut(s) 93, 601, 649, 814
BtsIMutI CAGTG 2 cut(s) 285, 1103
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 4 cut(s) 137, 664, 939, 968
CciNI GCGGCCGC 1 cut(s) 5
CfoI GCGC 2 cut(s) 39, 558
Cfr10I RCCGGY 2 cut(s) 25, 99
ClaI ATCGAT 1 cut(s) 546
CseI GACGC 2 cut(s) 8, 43
Csp6I GTAC 1 cut(s) 930
CviAII CATG 9 cut(s) 73, 274, 315, 663, 800, 938, 988, 1053, 1124
CviQI GTAC 1 cut(s) 930
DdeI CTNAG 2 cut(s) 676, 980
DpnI GATC 8 cut(s) 335, 342, 404, 417, 545, 621, 804, 834
DpnII GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
DraI TTTAAA 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 5
EagI CGGCCG 1 cut(s) 5
Eam1104I CTCTTC 2 cut(s) 190, 1028
EarI CTCTTC 2 cut(s) 190, 1028
EciI GGCGGA 3 cut(s) 52, 86, 187
EclXI CGGCCG 1 cut(s) 5
Eco130I CCWWGG 3 cut(s) 273, 411, 1052
Eco52I CGGCCG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 3 cut(s) 273, 411, 1052
EcoT22I ATGCAT 1 cut(s) 939
ErhI CCWWGG 3 cut(s) 273, 411, 1052
FaeI CATG 9 cut(s) 76, 277, 318, 666, 803, 941, 991, 1056, 1127
FatI CATG 9 cut(s) 72, 273, 314, 662, 799, 937, 987, 1052, 1123
FauI CCCGC 1 cut(s) 771
FbaI TGATCA 2 cut(s) 402, 802
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 6 cut(s) 5, 8, 40, 321, 1022, 1075
FokI GGATG 4 cut(s) 80, 608, 656, 821
Fsp4HI GCNGC 6 cut(s) 5, 8, 40, 321, 1022, 1075
FspBI CTAG 1 cut(s) 959
GlaI GCGC 2 cut(s) 38, 557
GluI GCNGC 6 cut(s) 5, 8, 40, 321, 1022, 1075
GsuI CTGGAG 2 cut(s) 371, 1127
HaeIII GGCC 1 cut(s) 7
HapII CCGG 4 cut(s) 13, 26, 100, 327
HgaI GACGC 2 cut(s) 8, 43
HhaI GCGC 2 cut(s) 39, 558
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 9 cut(s) 76, 277, 318, 666, 803, 941, 991, 1056, 1127
Hin6I GCGC 2 cut(s) 37, 556
HinP1I GCGC 2 cut(s) 37, 556
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 5 cut(s) 80, 152, 919, 984, 1082
HpaII CCGG 4 cut(s) 13, 26, 100, 327
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 3 cut(s) 23, 902, 1130
Hpy188I TCNGA 7 cut(s) 70, 167, 657, 688, 854, 996, 1099
Hpy188III TCNNGA 7 cut(s) 350, 476, 494, 566, 806, 959, 974
Hpy8I GTNNAC 3 cut(s) 23, 902, 1130
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 3 cut(s) 179, 289, 633
HpyCH4V TGCA 7 cut(s) 448, 647, 662, 937, 941, 1074, 1103
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 320
HpyF3I CTNAG 2 cut(s) 676, 980
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 9 cut(s) 76, 277, 318, 666, 803, 941, 991, 1056, 1127
HspAI GCGC 2 cut(s) 37, 556
Ksp22I TGATCA 2 cut(s) 402, 802
Kzo9I GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
LmnI GCTCC 2 cut(s) 144, 328
Lsp1109I GCAGC 2 cut(s) 332, 1086
LweI GCATC 4 cut(s) 586, 634, 1090, 1105
MaeI CTAG 1 cut(s) 959
MaeIII GTNAC 2 cut(s) 1047, 1091
MalI GATC 8 cut(s) 335, 342, 404, 417, 545, 621, 804, 834
MboI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
MboII GAAGA 4 cut(s) 177, 290, 538, 1045
MflI RGATCY 1 cut(s) 619
MluCI AATT 6 cut(s) 580, 670, 761, 866, 943, 997
MlyI GAGTC 2 cut(s) 146, 1076
MmeI TCCRAC 3 cut(s) 93, 352, 860
Mph1103I ATGCAT 1 cut(s) 939
MseI TTAA 5 cut(s) 54, 260, 296, 720, 825
MslI CAYNNNNRTG 2 cut(s) 1098, 1135
MspI CCGG 4 cut(s) 13, 26, 100, 327
MspR9I CCNGG 2 cut(s) 327, 792
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 792
MvnI CGCG 2 cut(s) 37, 778
MwoI GCNNNNNNNGC 2 cut(s) 16, 320
NciI CCSGG 1 cut(s) 327
NcoI CCATGG 2 cut(s) 273, 1052
NdeII GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
NlaIII CATG 9 cut(s) 76, 277, 318, 666, 803, 941, 991, 1056, 1127
NlaIV GGNNCC 2 cut(s) 621, 797
NmuCI GTSAC 1 cut(s) 1091
NotI GCGGCCGC 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 3 cut(s) 76, 666, 941
PaeI GCATGC 2 cut(s) 666, 941
PasI CCCWGGG 1 cut(s) 791
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 80, 919, 984
PkrI GCNGC 6 cut(s) 6, 9, 41, 322, 1023, 1076
PleI GAGTC 2 cut(s) 146, 1076
PpsI GAGTC 2 cut(s) 146, 1076
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 2 cut(s) 621, 797
PstI CTGCAG 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 619
RsaI GTAC 1 cut(s) 931
RsaNI GTAC 1 cut(s) 930
RseI CAYNNNNRTG 2 cut(s) 1098, 1135
SaqAI TTAA 5 cut(s) 54, 260, 296, 720, 825
SatI GCNGC 6 cut(s) 5, 8, 40, 321, 1022, 1075
Sau3AI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 802, 832
SchI GAGTC 2 cut(s) 146, 1076
ScrFI CCNGG 2 cut(s) 327, 792
SfaNI GCATC 4 cut(s) 586, 634, 1090, 1105
SfcI CTRYAG 1 cut(s) 1072
SmiMI CAYNNNNRTG 2 cut(s) 1098, 1135
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 2 cut(s) 666, 941
Sse9I AATT 6 cut(s) 580, 670, 761, 866, 943, 997
SspI AATATT 1 cut(s) 820
SspMI CTAG 1 cut(s) 959
StyD4I CCNGG 2 cut(s) 325, 790
StyI CCWWGG 3 cut(s) 273, 411, 1052
TaaI ACNGT 3 cut(s) 179, 289, 633
TaqI TCGA 5 cut(s) 47, 332, 339, 546, 1080
TaqII GACCGA 1 cut(s) 721
TasI AATT 6 cut(s) 580, 670, 761, 866, 943, 997
TatI WGTACW 1 cut(s) 929
TauI GCSGC 4 cut(s) 7, 10, 42, 1024
TfiI GAWTC 3 cut(s) 80, 919, 984
Tru1I TTAA 5 cut(s) 54, 260, 296, 720, 825
Tru9I TTAA 5 cut(s) 54, 260, 296, 720, 825
TscAI CASTG 2 cut(s) 292, 1110
TseFI GTSAC 1 cut(s) 1091
TseI GCWGC 2 cut(s) 320, 1074
Tsp45I GTSAC 1 cut(s) 1091
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 4 cut(s) 73, 608, 612, 1079
TspRI CASTG 2 cut(s) 292, 1110
XapI RAATTY 2 cut(s) 761, 866
XbaI TCTAGA 1 cut(s) 958
XceI RCATGY 3 cut(s) 76, 666, 941
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 1 cut(s) 959
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.