RchiOBHm_Chr4g0445641

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015842
Physical Location & Seq
Forward (+)
66040150 .. 66043154
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41323

Sequence Viewer

Length: 1137 bp
ATGCTTTCACACCGGAGGCGACTACCGGCGACTTTAGGCAGCCGTGATTCCAGCAGAGCCGCCGACATGTTGCCGGAATCCGTCGCACTCTTCCGGCGGTTCCTCTTCTTCCTCACCGTGTTTCTATCGTGCTTGCTCCTCTACAAAAACTCCGATACCCTCCGCCTTCTGCATCACTTCTCTTCTTATCCCTCTGCTTCCTTCACCGCCTTCAATTCCTCGCCGGTCAGTGAGGAACGAGGGATTGAAGAGGTTTTGAAGGATGCTGCTATGGAAGACGGGACGGTGATCTTGACGACGTTAAATGAAGCATGGGCGGCTCCAAATTCAATCATTGATCTCTTCCTTGAGAGCTTTAGGAATGGAATTGGCACTCATAGGCTCTTGAATCATTTGGTTATCGTTGCCTTGGACCAAAAGGCATATCAGCGTTGTTTGGAGGTACATACTCATTGCTTTGCTCTTCTTACTGAGGGAGTAGATTTTCATAAGGAGGCATACTTCATGACCCCCCAGTACTTGAAGATGATGTGGGCAAGGATTGATTTTCTCCGCTCTGTTCTTGAGATGGGCTACAATTTTGTCTTCACGGATGCTGATGTTATGTGGTTCAGGAATCCTTTTCCGCGGTTTTATTCGGATGCAGATTTTCAGATTGCTTGCGATCATTTCTTAGGCAGCTCCGATGATTTGCAGAACAGACCTAATGGAGGGTTCAACTATGTGAAGTCCAATAACCGGTCAATAGAGTTCTACAGATATTGGTATTCTTCTCGTGAAACCTACCCTGGATACCATGATCAGGATGTTCTCAATATGATCAAGTTTGATCCCTCCACTGTTAATATTGGACTGAAAATGAAATTTCTGGACACTGCTTATTTTGGTGGATTTTGTGAACCTAGTAGAGATTTGAATCAAGTTTGCACGATGCATGCAAATTGTTGTTTTGGTCTAGATAGCAAGCTGCATGACCTTAGAATTATGGTTCAGGACTGGAAGGAGTTTCTGTCCTTGCCACCAAGTTTGAAGAGAACTTTGATATTTCCATGGGCGGTTCCGCAGAATTGCAGCCTTGATTCTCTCCGTCGCTATGATATACCGGAGAGTGACCCTCAACATGGTTTGCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

378

Amino Acids

43.81

Weight (kDa)

5.91

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 128 - 326 7.6e-73 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14590
fragaria_vesca FvH4_4g36010
malus_domestica MD16G1009800.v1.1
prunus_persica Prupe.1G340800_v2.0.a1
pyrus_communis pycom16g00960
rosa_chinensis RchiOBHm_Chr4g0445641
rosa_laevigata RLG00000005722
rosa_multiflora Rmu_sc0003637.1_g000023 Rmu_sc0019383.1_g000003
rosa_roxburghii Rroxscaffold_5G00386120
rosa_rugosa Rorug04G0363600
rosa_samantha Rh4AG425200 Rh4CG451500 Rh4DG433500
rosa_wichuraiana Rw4G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 555
AccII CGCG 1 cut(s) 628
AclWI GGATC 1 cut(s) 824
AcsI RAATTY 2 cut(s) 325, 863
AfaI GTAC 2 cut(s) 444, 518
AfiI CCNNNNNNNGG 4 cut(s) 710, 738, 802, 1121
AflIII ACRYGT 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 738
AgsI TTSAA 9 cut(s) 214, 248, 259, 330, 388, 523, 718, 916, 1030
AjnI CCWGG 1 cut(s) 787
AluBI AGCT 3 cut(s) 354, 681, 967
AluI AGCT 3 cut(s) 354, 681, 967
AlwI GGATC 1 cut(s) 824
ApeKI GCWGC 5 cut(s) 39, 266, 678, 967, 1071
ApoI RAATTY 2 cut(s) 325, 863
AsiGI ACCGGT 1 cut(s) 738
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 3 cut(s) 106, 196, 298
AvaII GGWCC 1 cut(s) 412
BauI CACGAG 1 cut(s) 774
BbsI GAAGAC 2 cut(s) 282, 577
BbvI GCAGC 5 cut(s) 51, 253, 690, 954, 1083
BccI CCATC 1 cut(s) 562
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 1 cut(s) 785
BclI TGATCA 2 cut(s) 799, 819
BfaI CTAG 2 cut(s) 903, 956
BfmI CTRYAG 1 cut(s) 754
BfuI GTATCC 1 cut(s) 785
BisI GCNGC 7 cut(s) 40, 60, 267, 318, 679, 968, 1072
BlsI GCNGC 7 cut(s) 41, 61, 268, 319, 680, 969, 1073
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 789
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 3 cut(s) 101, 321, 1059
BmrFI CCNGG 1 cut(s) 789
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 5 cut(s) 181, 253, 583, 631, 921
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 2 cut(s) 282, 577
BplI GAGNNNNNCTC 2 cut(s) 1099, 1131
BpuEI CTTGAG 2 cut(s) 368, 584
BsaBI GATNNNNATC 1 cut(s) 915
BsaJI CCNNGG 4 cut(s) 408, 626, 787, 1049
BsaWI WCCGGW 3 cut(s) 12, 738, 1102
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 995, 1025
Bsc4I CCNNNNNNNGG 4 cut(s) 710, 738, 802, 1121
Bse118I RCCGGY 3 cut(s) 25, 223, 738
Bse1I ACTGG 2 cut(s) 514, 1001
Bse3DI GCAATG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 4 cut(s) 408, 626, 787, 1049
BseGI GGATG 4 cut(s) 268, 598, 646, 811
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 4 cut(s) 710, 738, 802, 1121
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 514, 1001
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 5 cut(s) 51, 253, 690, 954, 1083
Bsh1236I CGCG 1 cut(s) 628
BshTI ACCGGT 1 cut(s) 738
BsiSI CCGG 7 cut(s) 13, 26, 74, 94, 224, 739, 1103
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 4 cut(s) 710, 738, 802, 1121
BsmFI GGGAC 1 cut(s) 295
Bsp143I GATC 6 cut(s) 288, 337, 664, 799, 819, 829
Bsp19I CCATGG 1 cut(s) 1049
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 1 cut(s) 628
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 3 cut(s) 101, 321, 1059
BspPI GGATC 1 cut(s) 824
BspQI GCTCTTC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 3 cut(s) 25, 223, 738
BsrI ACTGG 2 cut(s) 514, 1001
BssAI RCCGGY 3 cut(s) 25, 223, 738
BssECI CCNNGG 4 cut(s) 408, 626, 787, 1049
BssMI GATC 6 cut(s) 288, 337, 664, 799, 819, 829
BssSI CACGAG 1 cut(s) 774
BssT1I CCWWGG 2 cut(s) 408, 1049
Bst2BI CACGAG 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 3 cut(s) 118, 286, 841
Bst6I CTCTTC 7 cut(s) 95, 110, 187, 243, 347, 468, 1025
BstC8I GCNNGC 4 cut(s) 134, 661, 936, 965
BstDEI CTNAG 3 cut(s) 471, 673, 977
BstDSI CCRYGG 2 cut(s) 626, 1049
BstENI CCTNNNNNAGG 1 cut(s) 708
BstF5I GGATG 4 cut(s) 268, 598, 646, 811
BstFNI CGCG 1 cut(s) 628
BstKTI GATC 6 cut(s) 291, 340, 667, 802, 822, 832
BstMBI GATC 6 cut(s) 288, 337, 664, 799, 819, 829
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 789
BstNSI RCATGY 2 cut(s) 70, 938
BstSCI CCNGG 1 cut(s) 787
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 5 cut(s) 51, 253, 690, 954, 1083
BstV2I GAAGAC 2 cut(s) 282, 577
BsuI GTATCC 1 cut(s) 785
BtgI CCRYGG 2 cut(s) 626, 1049
BtsCI GGATG 4 cut(s) 268, 598, 646, 811
BtsI GCAGTG 1 cut(s) 873
BtsIMutI CAGTG 3 cut(s) 235, 837, 873
Cac8I GCNNGC 4 cut(s) 134, 661, 936, 965
CciI TCATGA 1 cut(s) 504
Cfr10I RCCGGY 3 cut(s) 25, 223, 738
Cfr13I GGNCC 1 cut(s) 412
Cfr42I CCGCGG 1 cut(s) 629
Csp6I GTAC 2 cut(s) 443, 517
CspAI ACCGGT 1 cut(s) 738
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviAII CATG 8 cut(s) 67, 312, 505, 797, 935, 971, 1050, 1121
CviJI RGCY 9 cut(s) 42, 59, 320, 354, 382, 573, 681, 967, 1074
CviKI_1 RGCY 9 cut(s) 42, 59, 320, 354, 382, 573, 681, 967, 1074
CviQI GTAC 2 cut(s) 443, 517
DdeI CTNAG 3 cut(s) 471, 673, 977
DpnI GATC 6 cut(s) 290, 339, 666, 801, 821, 831
DpnII GATC 6 cut(s) 288, 337, 664, 799, 819, 829
Eam1104I CTCTTC 7 cut(s) 95, 110, 187, 243, 347, 468, 1025
EarI CTCTTC 7 cut(s) 95, 110, 187, 243, 347, 468, 1025
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 408, 1049
Eco47I GGWCC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 787
EcoT14I CCWWGG 2 cut(s) 408, 1049
EcoT22I ATGCAT 1 cut(s) 936
ErhI CCWWGG 2 cut(s) 408, 1049
FaeI CATG 8 cut(s) 70, 315, 508, 800, 938, 974, 1053, 1124
FaqI GGGAC 1 cut(s) 295
FatI CATG 8 cut(s) 66, 311, 504, 796, 934, 970, 1049, 1120
FbaI TGATCA 2 cut(s) 799, 819
Fnu4HI GCNGC 7 cut(s) 40, 60, 267, 318, 679, 968, 1072
FokI GGATG 4 cut(s) 275, 605, 653, 818
Fsp4HI GCNGC 7 cut(s) 40, 60, 267, 318, 679, 968, 1072
FspBI CTAG 2 cut(s) 903, 956
GluI GCNGC 7 cut(s) 40, 60, 267, 318, 679, 968, 1072
HapII CCGG 7 cut(s) 13, 26, 74, 94, 224, 739, 1103
Hin1II CATG 8 cut(s) 70, 315, 508, 800, 938, 974, 1053, 1124
HinfI GANTC 6 cut(s) 47, 77, 388, 616, 916, 1079
HpaII CCGG 7 cut(s) 13, 26, 74, 94, 224, 739, 1103
HphI GGTGA 3 cut(s) 106, 196, 298
Hpy166II GTNNAC 1 cut(s) 899
Hpy188I TCNGA 4 cut(s) 154, 640, 654, 685
Hpy8I GTNNAC 1 cut(s) 899
Hpy99I CGWCG 3 cut(s) 86, 301, 1092
HpyAV CCTTC 5 cut(s) 176, 211, 220, 253, 994
HpyCH4III ACNGT 3 cut(s) 118, 286, 841
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 9 cut(s) 172, 644, 694, 927, 934, 938, 970, 1071, 1129
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 471, 673, 977
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 8 cut(s) 70, 315, 508, 800, 938, 974, 1053, 1124
Ksp22I TGATCA 2 cut(s) 799, 819
KspI CCGCGG 1 cut(s) 629
Kzo9I GATC 6 cut(s) 288, 337, 664, 799, 819, 829
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 3 cut(s) 141, 325, 686
Lsp1109I GCAGC 5 cut(s) 51, 253, 690, 954, 1083
LweI GCATC 5 cut(s) 181, 253, 583, 631, 921
MaeI CTAG 2 cut(s) 903, 956
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 1109
MalI GATC 6 cut(s) 290, 339, 666, 801, 821, 831
MbiI CCGCTC 1 cut(s) 555
MboI GATC 6 cut(s) 288, 337, 664, 799, 819, 829
MluCI AATT 8 cut(s) 214, 325, 366, 577, 863, 940, 981, 1066
Mph1103I ATGCAT 1 cut(s) 936
MseI TTAA 2 cut(s) 302, 843
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 7 cut(s) 13, 26, 74, 94, 224, 739, 1103
MspR9I CCNGG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 789
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 1 cut(s) 317
NcoI CCATGG 1 cut(s) 1049
NdeII GATC 6 cut(s) 288, 337, 664, 799, 819, 829
NlaIII CATG 8 cut(s) 70, 315, 508, 800, 938, 974, 1053, 1124
NlaIV GGNNCC 3 cut(s) 101, 321, 1059
NmuCI GTSAC 1 cut(s) 1109
NsiI ATGCAT 1 cut(s) 936
NspI RCATGY 2 cut(s) 70, 938
PaeI GCATGC 1 cut(s) 938
PagI TCATGA 1 cut(s) 504
PciI ACATGT 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 468
PfeI GAWTC 6 cut(s) 47, 77, 388, 616, 916, 1079
PinAI ACCGGT 1 cut(s) 738
PkrI GCNGC 7 cut(s) 41, 61, 268, 319, 680, 969, 1073
PscI ACATGT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 3 cut(s) 101, 321, 1059
PspPI GGNCC 1 cut(s) 412
RsaI GTAC 2 cut(s) 444, 518
RsaNI GTAC 2 cut(s) 443, 517
SacII CCGCGG 1 cut(s) 629
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 302, 843
SatI GCNGC 7 cut(s) 40, 60, 267, 318, 679, 968, 1072
Sau3AI GATC 6 cut(s) 288, 337, 664, 799, 819, 829
Sau96I GGNCC 1 cut(s) 412
ScaI AGTACT 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 789
SfaNI GCATC 5 cut(s) 181, 253, 583, 631, 921
SfcI CTRYAG 1 cut(s) 754
Sfr303I CCGCGG 1 cut(s) 629
SgrBI CCGCGG 1 cut(s) 629
SinI GGWCC 1 cut(s) 412
SmlI CTYRAG 2 cut(s) 347, 563
SmoI CTYRAG 2 cut(s) 347, 563
SphI GCATGC 1 cut(s) 938
Sse9I AATT 8 cut(s) 214, 325, 366, 577, 863, 940, 981, 1066
SspI AATATT 1 cut(s) 847
SspMI CTAG 2 cut(s) 903, 956
StyD4I CCNGG 1 cut(s) 787
StyI CCWWGG 2 cut(s) 408, 1049
TaaI ACNGT 3 cut(s) 118, 286, 841
TaiI ACGT 1 cut(s) 302
TasI AATT 8 cut(s) 214, 325, 366, 577, 863, 940, 981, 1066
TatI WGTACW 1 cut(s) 516
TauI GCSGC 2 cut(s) 62, 320
TfiI GAWTC 6 cut(s) 47, 77, 388, 616, 916, 1079
Tru1I TTAA 2 cut(s) 302, 843
Tru9I TTAA 2 cut(s) 302, 843
TscAI CASTG 3 cut(s) 235, 844, 880
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 5 cut(s) 39, 266, 678, 967, 1071
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 4 cut(s) 321, 476, 493, 875
TspGWI ACGGA 3 cut(s) 70, 605, 1076
TspRI CASTG 3 cut(s) 235, 844, 880
VpaK11BI GGWCC 1 cut(s) 412
XagI CCTNNNNNAGG 1 cut(s) 708
XapI RAATTY 2 cut(s) 325, 863
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 2 cut(s) 70, 938
XspI CTAG 2 cut(s) 903, 956
ZrmI AGTACT 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.