FvH4_4g36010

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015842
Physical Location & Seq
Forward (+)
33112581 .. 33115209
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36010.t1

Sequence Viewer

Length: 1140 bp
ATGCGTCCACACCAGAGGCGACTACCGGCGACTCTAGTCAGCCGTCGTGATTTCTGCAGAGTCGCCGACATGTTGCCGGAAGCCGTCGCACTCGTCCGCCGCTTCCTCTTCTTCCTCGCCGTGTTCCTTTTTTGCTTGCTCCTCTACAGAGACTCCGACGCCCTCCGCCTCCTCCACCACTTCTCTTCTTATCCCGCCTCTTCCTTCACCGCCTTCTATTCCCCGCCGGTCAGTGAGGAACGTGGGATTGAGGAGGTTTTGAAGGATGCTGCAATGGAAGACGGGACGGTGATCCTGACGACGTTAAATGAAGCATGGGCGGCTCCGAATTCGATCATTGATCTTTTCGTTGAGAGCTTTAGGAATGGAGTTGGCACTCGTAGGCTCTTGAATCATTTAGTGATCATTGCCTTGGATCAAAAGGCATATCGGCGTTGTTTGCAGATACATACTCATTGCTTTGGTCTCCATACTGAGGGAGTAGATTTTCGTGAGGAGGCCTACTTCATGACCCCCAACTACTTGAAGATGATGTGGGCGAGGATTGATTTTCTTCTCTCTGTTCTTGAGATGGGATTCAATTTTGTTTTCACGGATGCTGATGTTATGTGGTTTAGAGATCCTTTTCCACGGTTTTATTCCGATGCAGATTTTCAGATTGCTTGTGATCATTTCTTAGGCAGCTCTGATGATTTGCAGAACAAACCTAATGGAGGGTTCAACTATGTGAAGTCCAATAACAGGTCAATAGAATTCTACAAACATTGGTATTCTTCGCGTGAAACCTACCCTGGATACCATGATCAGGATGTTCTCAATATGATCAAGTTTGATCCATCCACTCTCAGTATTGGATTGAGAATGAAATTCCTGGACACTGCTTACTTTGGTGGATTTTGTGAACCTAGTAGAGATTTGAATCAAGTTTGCACGATGCATGCAAATTGTTGTTTTGGTCTAGATAGCAAGCTTCATGACCTTAGAATTATGGTTCAAGACTGGAAAGAATTTCTGTCCTTGCCACCAAGTTTGAAGAGAGATTATATATTCCCATGGGCGGTTCCACAGAATTGCAGCCTTGATTCTCTCCGTCACTATGATGCACCCCAGAGTGACGATCAACATAATGAGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

380

Amino Acids

44.19

Weight (kDa)

5.61

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 129 - 327 4e-70 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14590
fragaria_vesca FvH4_4g36010
malus_domestica MD16G1009800.v1.1
prunus_persica Prupe.1G340800_v2.0.a1
pyrus_communis pycom16g00960
rosa_chinensis RchiOBHm_Chr4g0445641
rosa_laevigata RLG00000005722
rosa_multiflora Rmu_sc0003637.1_g000023 Rmu_sc0019383.1_g000003
rosa_roxburghii Rroxscaffold_5G00386120
rosa_rugosa Rorug04G0363600
rosa_samantha Rh4AG425200 Rh4CG451500 Rh4DG433500
rosa_wichuraiana Rw4G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 778
AciI CCGC 8 cut(s) 97, 100, 166, 195, 210, 224, 320, 1058
AclWI GGATC 4 cut(s) 286, 423, 614, 827
AcsI RAATTY 4 cut(s) 328, 752, 866, 1007
AcyI GRCGYC 1 cut(s) 159
AfiI CCNNNNNNNGG 5 cut(s) 475, 713, 741, 805, 1057
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 8 cut(s) 262, 391, 526, 580, 721, 919, 995, 1033
AjnI CCWGG 2 cut(s) 790, 870
AluBI AGCT 3 cut(s) 357, 684, 970
AluI AGCT 3 cut(s) 357, 684, 970
Alw26I GTCTC 2 cut(s) 144, 470
AlwI GGATC 4 cut(s) 286, 423, 614, 827
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 3 cut(s) 269, 681, 1074
ApoI RAATTY 4 cut(s) 328, 752, 866, 1007
AsuHPI GGTGA 2 cut(s) 199, 301
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 256, 693, 1086
BccI CCATC 2 cut(s) 565, 844
BceAI ACGGC 3 cut(s) 27, 68, 104
BciT130I CCWGG 2 cut(s) 792, 872
BciVI GTATCC 1 cut(s) 788
BclI TGATCA 4 cut(s) 402, 667, 802, 822
BcoDI GTCTC 2 cut(s) 144, 470
BfaI CTAG 3 cut(s) 35, 906, 959
BfmI CTRYAG 2 cut(s) 55, 145
BfuI GTATCC 1 cut(s) 788
BisI GCNGC 5 cut(s) 100, 270, 321, 682, 1075
BlsI GCNGC 5 cut(s) 101, 271, 322, 683, 1076
Bme1390I CCNGG 2 cut(s) 792, 872
BmiI GGNNCC 2 cut(s) 324, 1062
BmrFI CCNGG 2 cut(s) 792, 872
BmsI GCATC 5 cut(s) 256, 586, 634, 924, 1090
BoxI GACNNNNGTC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 411, 629, 790, 1052
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 5 cut(s) 475, 713, 741, 805, 1057
Bse118I RCCGGY 2 cut(s) 25, 226
Bse1I ACTGG 1 cut(s) 1004
Bse3DI GCAATG 3 cut(s) 279, 405, 454
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 2 cut(s) 792, 872
BseDI CCNNGG 4 cut(s) 411, 629, 790, 1052
BseGI GGATG 4 cut(s) 271, 601, 814, 836
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 5 cut(s) 475, 713, 741, 805, 1057
BseMI GCAATG 3 cut(s) 279, 405, 454
BseMII CTCAG 2 cut(s) 465, 859
BseNI ACTGG 1 cut(s) 1004
BseRI GAGGAG 4 cut(s) 131, 161, 266, 509
BseXI GCAGC 3 cut(s) 256, 693, 1086
Bsh1236I CGCG 1 cut(s) 778
BshFI GGCC 1 cut(s) 500
BsiSI CCGG 3 cut(s) 26, 77, 227
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 5 cut(s) 475, 713, 741, 805, 1057
BsmAI GTCTC 2 cut(s) 144, 470
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 500
Bso31I GGTCTC 1 cut(s) 470
Bsp19I CCATGG 1 cut(s) 1052
BspACI CCGC 8 cut(s) 97, 100, 166, 195, 210, 224, 320, 1058
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 2 cut(s) 466, 858
BspFNI CGCG 1 cut(s) 778
BspHI TCATGA 2 cut(s) 507, 973
BspLI GGNNCC 2 cut(s) 324, 1062
BspMAI CTGCAG 1 cut(s) 59
BspPI GGATC 4 cut(s) 286, 423, 614, 827
BspTNI GGTCTC 1 cut(s) 470
BsrDI GCAATG 3 cut(s) 279, 405, 454
BsrFI RCCGGY 2 cut(s) 25, 226
BsrI ACTGG 1 cut(s) 1004
BssAI RCCGGY 2 cut(s) 25, 226
BssECI CCNNGG 4 cut(s) 411, 629, 790, 1052
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 2 cut(s) 411, 1052
Bst2UI CCWGG 2 cut(s) 792, 872
Bst4CI ACNGT 2 cut(s) 289, 633
Bst6I CTCTTC 4 cut(s) 113, 190, 205, 1028
BstACI GRCGYC 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 137, 939, 968
BstDEI CTNAG 4 cut(s) 474, 676, 845, 980
BstDSI CCRYGG 2 cut(s) 629, 1052
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 4 cut(s) 271, 601, 814, 836
BstFNI CGCG 1 cut(s) 778
BstMAI GTCTC 2 cut(s) 144, 470
BstMWI GCNNNNNNNGC 2 cut(s) 320, 439
BstNI CCWGG 2 cut(s) 792, 872
BstNSI RCATGY 2 cut(s) 73, 941
BstPAI GACNNNNGTC 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 790, 870
BstSFI CTRYAG 2 cut(s) 55, 145
BstUI CGCG 1 cut(s) 778
BstV1I GCAGC 3 cut(s) 256, 693, 1086
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 1 cut(s) 500
BtgI CCRYGG 2 cut(s) 629, 1052
BtsCI GGATG 4 cut(s) 271, 601, 814, 836
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 238, 876
Cac8I GCNNGC 3 cut(s) 137, 939, 968
CciI TCATGA 2 cut(s) 507, 973
Cfr10I RCCGGY 2 cut(s) 25, 226
CseI GACGC 1 cut(s) 167
CspCI CAANNNNNGTGG 2 cut(s) 1011, 1046
CviAII CATG 7 cut(s) 70, 315, 508, 800, 938, 974, 1053
CviJI RGCY 9 cut(s) 42, 83, 323, 357, 385, 500, 684, 970, 1077
CviKI_1 RGCY 9 cut(s) 42, 83, 323, 357, 385, 500, 684, 970, 1077
DdeI CTNAG 4 cut(s) 474, 676, 845, 980
Eam1104I CTCTTC 4 cut(s) 113, 190, 205, 1028
EarI CTCTTC 4 cut(s) 113, 190, 205, 1028
EciI GGCGGA 2 cut(s) 86, 155
Eco130I CCWWGG 2 cut(s) 411, 1052
Eco147I AGGCCT 1 cut(s) 500
Eco31I GGTCTC 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoRI GAATTC 2 cut(s) 328, 752
EcoRII CCWGG 2 cut(s) 790, 870
EcoT14I CCWWGG 2 cut(s) 411, 1052
EcoT22I ATGCAT 1 cut(s) 939
ErhI CCWWGG 2 cut(s) 411, 1052
FaeI CATG 7 cut(s) 73, 318, 511, 803, 941, 977, 1056
FaqI GGGAC 1 cut(s) 298
FatI CATG 7 cut(s) 69, 314, 507, 799, 937, 973, 1052
FauI CCCGC 2 cut(s) 202, 231
FbaI TGATCA 4 cut(s) 402, 667, 802, 822
Fnu4HI GCNGC 5 cut(s) 100, 270, 321, 682, 1075
FokI GGATG 4 cut(s) 278, 608, 821, 823
Fsp4HI GCNGC 5 cut(s) 100, 270, 321, 682, 1075
FspBI CTAG 3 cut(s) 35, 906, 959
GluI GCNGC 5 cut(s) 100, 270, 321, 682, 1075
HaeIII GGCC 1 cut(s) 500
HapII CCGG 3 cut(s) 26, 77, 227
HgaI GACGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 7 cut(s) 73, 318, 511, 803, 941, 977, 1056
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 7 cut(s) 31, 60, 152, 391, 576, 919, 1082
HpaII CCGG 3 cut(s) 26, 77, 227
HphI GGTGA 2 cut(s) 199, 301
Hpy166II GTNNAC 2 cut(s) 8, 902
Hpy188I TCNGA 5 cut(s) 157, 327, 643, 657, 688
Hpy8I GTNNAC 2 cut(s) 8, 902
Hpy99I CGWCG 4 cut(s) 48, 89, 161, 304
HpyAV CCTTC 3 cut(s) 214, 223, 256
HpyCH4III ACNGT 2 cut(s) 289, 633
HpyCH4IV ACGT 2 cut(s) 241, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 439
HpyF3I CTNAG 4 cut(s) 474, 676, 845, 980
HpySE526I ACGT 2 cut(s) 241, 302
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 7 cut(s) 73, 318, 511, 803, 941, 977, 1056
Ksp22I TGATCA 4 cut(s) 402, 667, 802, 822
LmnI GCTCC 2 cut(s) 144, 328
Lsp1109I GCAGC 3 cut(s) 256, 693, 1086
LweI GCATC 5 cut(s) 256, 586, 634, 924, 1090
MaeI CTAG 3 cut(s) 35, 906, 959
MaeII ACGT 2 cut(s) 241, 302
MaeIII GTNAC 2 cut(s) 1091, 1112
MboII GAAGA 9 cut(s) 100, 103, 177, 192, 290, 538, 545, 765, 1045
MflI RGATCY 1 cut(s) 619
MluCI AATT 8 cut(s) 328, 580, 752, 866, 943, 984, 1007, 1069
MlyI GAGTC 3 cut(s) 25, 69, 146
MmeI TCCRAC 1 cut(s) 180
Mph1103I ATGCAT 1 cut(s) 939
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 1098
MspI CCGG 3 cut(s) 26, 77, 227
MspR9I CCNGG 2 cut(s) 792, 872
MvaI CCWGG 2 cut(s) 792, 872
MvnI CGCG 1 cut(s) 778
MwoI GCNNNNNNNGC 2 cut(s) 320, 439
NcoI CCATGG 1 cut(s) 1052
NlaIII CATG 7 cut(s) 73, 318, 511, 803, 941, 977, 1056
NlaIV GGNNCC 2 cut(s) 324, 1062
NmuCI GTSAC 2 cut(s) 1091, 1112
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 2 cut(s) 73, 941
PaeI GCATGC 1 cut(s) 941
PagI TCATGA 2 cut(s) 507, 973
PceI AGGCCT 1 cut(s) 500
PciI ACATGT 1 cut(s) 69
PfeI GAWTC 4 cut(s) 391, 576, 919, 1082
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 5 cut(s) 101, 271, 322, 683, 1076
PleI GAGTC 3 cut(s) 25, 68, 146
PpsI GAGTC 3 cut(s) 25, 68, 146
PscI ACATGT 1 cut(s) 69
PshAI GACNNNNGTC 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 790, 870
PspGI CCWGG 2 cut(s) 790, 870
PspN4I GGNNCC 2 cut(s) 324, 1062
PstI CTGCAG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 1098
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 5 cut(s) 100, 270, 321, 682, 1075
SchI GAGTC 3 cut(s) 25, 69, 146
ScrFI CCNGG 2 cut(s) 792, 872
SfaNI GCATC 5 cut(s) 256, 586, 634, 924, 1090
SfcI CTRYAG 2 cut(s) 55, 145
SmiMI CAYNNNNRTG 1 cut(s) 1098
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 1 cut(s) 941
Sse9I AATT 8 cut(s) 328, 580, 752, 866, 943, 984, 1007, 1069
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 8 cut(s) 97, 100, 166, 195, 210, 224, 320, 1058
SspMI CTAG 3 cut(s) 35, 906, 959
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 790, 870
StyI CCWWGG 2 cut(s) 411, 1052
TaaI ACNGT 2 cut(s) 289, 633
TaiI ACGT 2 cut(s) 244, 305
TaqI TCGA 1 cut(s) 332
TasI AATT 8 cut(s) 328, 580, 752, 866, 943, 984, 1007, 1069
TauI GCSGC 2 cut(s) 102, 323
TfiI GAWTC 4 cut(s) 391, 576, 919, 1082
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 2 cut(s) 238, 883
TseFI GTSAC 2 cut(s) 1091, 1112
TseI GCWGC 3 cut(s) 269, 681, 1074
Tsp45I GTSAC 2 cut(s) 1091, 1112
TspDTI ATGAA 4 cut(s) 324, 496, 878, 962
TspGWI ACGGA 2 cut(s) 608, 1079
TspRI CASTG 2 cut(s) 238, 883
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 4 cut(s) 328, 752, 866, 1007
XbaI TCTAGA 1 cut(s) 958
XceI RCATGY 2 cut(s) 73, 941
XspI CTAG 3 cut(s) 35, 906, 959
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.