pycom16g00960

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015842
Physical Location & Seq
Reverse (-)
578210 .. 579776
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00960.2

Sequence Viewer

Length: 825 bp
ATGCGTCCGCACCGGAGGCGTCTACCGGCGATGACGCGCCGCACATCGACCATTGACTCCTCCGCCTCCGACATGCCTGAATCGGTCGTCCTTATCCGTCGGTTTCTCTTCTTTGTCGCGGTCTGTCTCTCCTGCCTGCTCCTCTACAACGACTCCAATGCCCTCCGCTTTCTACACCGGTTCTCTTCCTCTCCCTCCGCCTCATTCTCCGCCTACCTTTCCCCTCTCGTTAGCGAGGAACATAGGCTTGAAAAGGTTTTAAAGAATGCTACCATGGAAGACGGCACTGTGATTTTAACAACTTTGAATGAAGCATGGGCAGCTCCCGGCTCGATCCTCGATCTCTTTCTGGAGAGCTTTAGGATTGGAGTTGGAACTCATAGGCTATTGAGCCATTTGGTGATCATTGCCTTGGATCCAAAGGCATTTGAGCGTTGTTTGGAGGTGCATAACCATTGCTTTGCTCTTGTCATTCAAGACTCTGATTTTCGTCAGGAGGCTTATTTTATGACCCCTCACTACTTGAAGATGATGTGGGCAAGGATCGATTTTCTGCGCTCTGTTCTTGAGATGGGCTACAATTTCGTTTTCACGGATGCGGATATTATGTGGTTCAGGGATCCATTTCCACAGTTTTATGAGGATGCAGATTTTCAGATTGCATGCGATAATTTCTTAGGCAACTCGGATGATCTACAGAACAAACCGAATGGAGGGTTTAACTATGTAAAGTCCAATAGCAGGTCAATAGCGTTCTACAAATTTTGGTATTCCTCGCGGGAAACCTACCCTGGGTTCCATGATCGATGTCCTCAATATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

275

Amino Acids

31.88

Weight (kDa)

6.3

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14590
fragaria_vesca FvH4_4g36010
malus_domestica MD16G1009800.v1.1
prunus_persica Prupe.1G340800_v2.0.a1
pyrus_communis pycom16g00960
rosa_chinensis RchiOBHm_Chr4g0445641
rosa_laevigata RLG00000005722
rosa_multiflora Rmu_sc0003637.1_g000023 Rmu_sc0019383.1_g000003
rosa_roxburghii Rroxscaffold_5G00386120
rosa_rugosa Rorug04G0363600
rosa_samantha Rh4AG425200 Rh4CG451500 Rh4DG433500
rosa_wichuraiana Rw4G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 22
AccII CGCG 3 cut(s) 37, 119, 778
AciI CCGC 9 cut(s) 8, 40, 63, 119, 166, 198, 210, 599, 778
AclWI GGATC 6 cut(s) 328, 410, 423, 551, 614, 627
AcsI RAATTY 1 cut(s) 761
AcyI GRCGYC 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 713, 741, 792
AgeI ACCGGT 1 cut(s) 177
AgsI TTSAA 4 cut(s) 251, 307, 476, 526
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 2 cut(s) 323, 357
AluI AGCT 2 cut(s) 323, 357
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 6 cut(s) 328, 410, 423, 551, 614, 627
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 761
AsiGI ACCGGT 1 cut(s) 177
AspLEI GCGC 2 cut(s) 39, 558
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 412
BamHI GGATCC 2 cut(s) 415, 619
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 565
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 792
BclI TGATCA 1 cut(s) 402
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 732
BisI GCNGC 2 cut(s) 40, 321
BlsI GCNGC 2 cut(s) 41, 322
Bme1390I CCNGG 2 cut(s) 327, 792
BmiI GGNNCC 3 cut(s) 417, 621, 797
BmrFI CCNGG 2 cut(s) 327, 792
BmsI GCATC 2 cut(s) 586, 634
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 327
Bsa29I ATCGAT 2 cut(s) 546, 805
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 4 cut(s) 273, 411, 790, 791
BsaWI WCCGGW 2 cut(s) 12, 177
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 713, 741, 792
Bse118I RCCGGY 2 cut(s) 25, 177
Bse3DI GCAATG 2 cut(s) 405, 454
BseBI CCWGG 1 cut(s) 792
BseCI ATCGAT 2 cut(s) 546, 805
BseDI CCNNGG 4 cut(s) 273, 411, 790, 791
BseGI GGATG 3 cut(s) 601, 649, 694
BseLI CCNNNNNNNGG 3 cut(s) 713, 741, 792
BseMI GCAATG 2 cut(s) 405, 454
BseRI GAGGAG 2 cut(s) 49, 131
BseXI GCAGC 1 cut(s) 332
Bsh1236I CGCG 3 cut(s) 37, 119, 778
Bsh1285I CGRYCG 1 cut(s) 87
BshTI ACCGGT 1 cut(s) 177
BshVI ATCGAT 2 cut(s) 546, 805
BsiEI CGRYCG 1 cut(s) 87
BsiSI CCGG 4 cut(s) 13, 26, 178, 327
BslI CCNNNNNNNGG 3 cut(s) 713, 741, 792
BsmAI GTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 271
Bsp143I GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 9 cut(s) 8, 40, 63, 119, 166, 198, 210, 599, 778
BspDI ATCGAT 2 cut(s) 546, 805
BspFNI CGCG 3 cut(s) 37, 119, 778
BspLI GGNNCC 3 cut(s) 417, 621, 797
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 6 cut(s) 328, 410, 423, 551, 614, 627
BsrDI GCAATG 2 cut(s) 405, 454
BsrFI RCCGGY 2 cut(s) 25, 177
BssAI RCCGGY 2 cut(s) 25, 177
BssECI CCNNGG 4 cut(s) 273, 411, 790, 791
BssMI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 2 cut(s) 273, 411
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 289, 633
Bst6I CTCTTC 2 cut(s) 113, 190
BstACI GRCGYC 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 137, 664
BstDEI CTNAG 1 cut(s) 676
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 601, 649, 694
BstFNI CGCG 3 cut(s) 37, 119, 778
BstHHI GCGC 2 cut(s) 39, 558
BstKTI GATC 8 cut(s) 336, 343, 405, 418, 546, 622, 694, 805
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 16, 320
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 2 cut(s) 76, 666
BstSCI CCNGG 2 cut(s) 325, 790
BstSFI CTRYAG 1 cut(s) 695
BstUI CGCG 3 cut(s) 37, 119, 778
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 2 cut(s) 415, 619
BstYI RGATCY 2 cut(s) 415, 619
Bsu15I ATCGAT 2 cut(s) 546, 805
BsuTUI ATCGAT 2 cut(s) 546, 805
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 601, 649, 694
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 2 cut(s) 137, 664
CfoI GCGC 2 cut(s) 39, 558
Cfr10I RCCGGY 2 cut(s) 25, 177
ClaI ATCGAT 2 cut(s) 546, 805
CseI GACGC 2 cut(s) 8, 43
CspAI ACCGGT 1 cut(s) 177
CviAII CATG 5 cut(s) 73, 274, 315, 663, 800
CviJI RGCY 8 cut(s) 247, 323, 330, 357, 385, 393, 500, 576
CviKI_1 RGCY 8 cut(s) 247, 323, 330, 357, 385, 393, 500, 576
DdeI CTNAG 1 cut(s) 676
DpnI GATC 8 cut(s) 335, 342, 404, 417, 545, 621, 693, 804
DpnII GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
DraI TTTAAA 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 113, 190
EarI CTCTTC 2 cut(s) 113, 190
EciI GGCGGA 3 cut(s) 52, 187, 199
Eco130I CCWWGG 2 cut(s) 273, 411
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 2 cut(s) 273, 411
ErhI CCWWGG 2 cut(s) 273, 411
FaeI CATG 5 cut(s) 76, 277, 318, 666, 803
FatI CATG 5 cut(s) 72, 273, 314, 662, 799
FauI CCCGC 1 cut(s) 771
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 40, 321
FokI GGATG 3 cut(s) 608, 656, 701
Fsp4HI GCNGC 2 cut(s) 40, 321
GlaI GCGC 2 cut(s) 38, 557
GluI GCNGC 2 cut(s) 40, 321
GsuI CTGGAG 1 cut(s) 371
HapII CCGG 4 cut(s) 13, 26, 178, 327
HgaI GACGC 2 cut(s) 8, 43
HhaI GCGC 2 cut(s) 39, 558
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 5 cut(s) 76, 277, 318, 666, 803
Hin6I GCGC 2 cut(s) 37, 556
HinP1I GCGC 2 cut(s) 37, 556
HinfI GANTC 4 cut(s) 56, 80, 152, 479
HpaII CCGG 4 cut(s) 13, 26, 178, 327
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 70, 484, 657, 688
Hpy188III TCNNGA 4 cut(s) 350, 476, 494, 566
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 102
HpyCH4III ACNGT 2 cut(s) 289, 633
HpyCH4V TGCA 3 cut(s) 448, 647, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 320
HpyF3I CTNAG 1 cut(s) 676
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 5 cut(s) 76, 277, 318, 666, 803
HspAI GCGC 2 cut(s) 37, 556
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
LmnI GCTCC 2 cut(s) 144, 328
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 2 cut(s) 586, 634
MalI GATC 8 cut(s) 335, 342, 404, 417, 545, 621, 693, 804
MboI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
MboII GAAGA 4 cut(s) 100, 177, 290, 538
MflI RGATCY 2 cut(s) 415, 619
MluCI AATT 3 cut(s) 580, 670, 761
MlyI GAGTC 3 cut(s) 50, 146, 473
MmeI TCCRAC 2 cut(s) 93, 352
MseI TTAA 4 cut(s) 260, 296, 720, 823
MspI CCGG 4 cut(s) 13, 26, 178, 327
MspR9I CCNGG 2 cut(s) 327, 792
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 792
MvnI CGCG 3 cut(s) 37, 119, 778
MwoI GCNNNNNNNGC 2 cut(s) 16, 320
NciI CCSGG 1 cut(s) 327
NcoI CCATGG 1 cut(s) 273
NdeII GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
NlaIII CATG 5 cut(s) 76, 277, 318, 666, 803
NlaIV GGNNCC 3 cut(s) 417, 621, 797
NspI RCATGY 2 cut(s) 76, 666
PaeI GCATGC 1 cut(s) 666
PasI CCCWGGG 1 cut(s) 791
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 177
PkrI GCNGC 2 cut(s) 41, 322
PleI GAGTC 3 cut(s) 50, 146, 473
PpsI GAGTC 3 cut(s) 50, 146, 473
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 3 cut(s) 417, 621, 797
PsuI RGATCY 2 cut(s) 415, 619
SaqAI TTAA 4 cut(s) 260, 296, 720, 823
SatI GCNGC 2 cut(s) 40, 321
Sau3AI GATC 8 cut(s) 333, 340, 402, 415, 543, 619, 691, 802
SchI GAGTC 3 cut(s) 50, 146, 473
ScrFI CCNGG 2 cut(s) 327, 792
SetI ASST 7 cut(s) 219, 258, 325, 359, 447, 746, 788
SfaNI GCATC 2 cut(s) 586, 634
SfcI CTRYAG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SphI GCATGC 1 cut(s) 666
Sse9I AATT 3 cut(s) 580, 670, 761
SsiI CCGC 9 cut(s) 8, 40, 63, 119, 166, 198, 210, 599, 778
SspI AATATT 1 cut(s) 818
StyD4I CCNGG 2 cut(s) 325, 790
StyI CCWWGG 2 cut(s) 273, 411
TaaI ACNGT 2 cut(s) 289, 633
TaqI TCGA 5 cut(s) 47, 332, 339, 546, 805
TaqII GACCGA 1 cut(s) 73
TasI AATT 3 cut(s) 580, 670, 761
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 4 cut(s) 260, 296, 720, 823
Tru9I TTAA 4 cut(s) 260, 296, 720, 823
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 2 cut(s) 86, 608
TspRI CASTG 1 cut(s) 292
XapI RAATTY 1 cut(s) 761
XceI RCATGY 2 cut(s) 76, 666
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.