Prupe.1G340800_v2.0.a1

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015842
Physical Location & Seq
Forward (+)
32029663 .. 32033468
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G340800.1

Sequence Viewer

Length: 1140 bp
ATGCATCCGCACCGGAGGCGTCTCCCGCCGACGACGCTCCGTACACTCACCATTGACTCCGCCGCCGCCATGGTTCCAGAATCCGTGGTACTCATCCGCCGGTTCCTCTTGTTTGTGGCGGTTTGCCTCTCGTGCTTGCTCCTCTACAACGACTCCAATGCCCTGCGCTTTCTCCCTCGCTTCTCTTCGTCTCCCTCTGTTCTCTTCTCCGCCAACAATTCCCCTCTCGTTAGCGGGCAACATAGGCTTCAAAAGGTTTTGAAGGATGCTGCCATGGAAGACGGAACTGTGATTTTAACAACTTTGAATGAAGCATGGGCAGCTCCCAATTCAATCATCGATCTCTTCCTCGAGAGCTTTAAGATTGGAGTTGGCACCCAGAGGCTCCTGAACCATTTGGTGATCATTGCCTTGGATCAAAAGGCATTTCACCGTTGTTTGGAGCTGCATACCCATTGTTTTGCTCTTATCACTCAAGGGGTTGATTTTCGTCGAGAGGCTTATTTTATGACCCCTCACTACTTGAAGATGATGTGGGCAAGGATTGATTTTCTGCGCTCTGTTCTTGAGATGGGCTACAATTTTGTTTTCACGGATGCTGATGTTATGTGGTTTAGGGATCCATTTCCACAGTTTTATATGGATGCTGATTTCCAGATCGCATGTGACCATTTCCTAGGCAGCTCAGATGATTTAGAGAACAAACCCAACGGAGGGTTTAACTATGTAAAGTCCAATAACAGGTCAATAGAGTTCTACAAATTTTGGTATTCGTCACGGGAAACCTACCCTGGATTTCATGATCAGGATGTCCTCAATATAATCAAGTTTCATCCTTCCACCTTTACTATTGGACTGAGAATGAAATTTTTGGATACTGCTTACTTTGGTGGATTTTGTGAACCTAGTAAAGATTTGAATCAAGTTTGTACAATGCATGCAAATTGTTGCTATGGTCTAGATAGCAAGCTTCATGACCTTCGAATCATGGTTCAGAATTGGAAGCAGTTTATGTCCTTGCGACCAAATTTGAAGAGATATTTGATCTTACCATGGGGGGTTCCGCAGAATTGCAGCCTTGATTCTCTCCGTCGCTATGATGCACCAGAGAGCAATAATCCACATGATTTGCAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

380

Amino Acids

43.87

Weight (kDa)

7.21

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14590
fragaria_vesca FvH4_4g36010
malus_domestica MD16G1009800.v1.1
prunus_persica Prupe.1G340800_v2.0.a1
pyrus_communis pycom16g00960
rosa_chinensis RchiOBHm_Chr4g0445641
rosa_laevigata RLG00000005722
rosa_multiflora Rmu_sc0003637.1_g000023 Rmu_sc0019383.1_g000003
rosa_roxburghii Rroxscaffold_5G00386120
rosa_rugosa Rorug04G0363600
rosa_samantha Rh4AG425200 Rh4CG451500 Rh4DG433500
rosa_wichuraiana Rw4G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AclWI GGATC 3 cut(s) 423, 614, 627
AcsI RAATTY 3 cut(s) 761, 866, 1027
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 3 cut(s) 43, 90, 931
AfiI CCNNNNNNNGG 4 cut(s) 439, 713, 714, 741
AgsI TTSAA 7 cut(s) 251, 262, 307, 333, 526, 919, 1033
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 5 cut(s) 323, 357, 445, 684, 970
AluI AGCT 5 cut(s) 323, 357, 445, 684, 970
Alw26I GTCTC 2 cut(s) 26, 195
AlwI GGATC 3 cut(s) 423, 614, 627
Ama87I CYCGRG 1 cut(s) 350
ApeKI GCWGC 5 cut(s) 269, 320, 445, 681, 1074
ApoI RAATTY 3 cut(s) 761, 866, 1027
AspA2I CCTAGG 1 cut(s) 676
AspLEI GCGC 2 cut(s) 168, 558
AsuHPI GGTGA 3 cut(s) 40, 412, 422
AsuII TTCGAA 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 350
AvrII CCTAGG 1 cut(s) 676
BamHI GGATCC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 374
BauI CACGAG 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 5 cut(s) 256, 332, 432, 693, 1086
BccI CCATC 1 cut(s) 565
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 2 cut(s) 402, 802
BcoDI GTCTC 2 cut(s) 26, 195
BfaI CTAG 3 cut(s) 677, 906, 959
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 7 cut(s) 63, 66, 270, 321, 446, 682, 1075
BlnI CCTAGG 1 cut(s) 676
BlsI GCNGC 7 cut(s) 64, 67, 271, 322, 447, 683, 1076
Bme1390I CCNGG 1 cut(s) 792
BmeT110I CYCGRG 1 cut(s) 350
BmiI GGNNCC 6 cut(s) 75, 104, 376, 386, 621, 1062
BmrFI CCNGG 1 cut(s) 792
BmsI GCATC 5 cut(s) 13, 256, 586, 634, 1090
BpiI GAAGAC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 982
BpuEI CTTGAG 2 cut(s) 459, 587
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 7 cut(s) 69, 84, 273, 411, 676, 790, 1052
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 4 cut(s) 439, 713, 714, 741
Bse118I RCCGGY 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 1 cut(s) 792
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 7 cut(s) 69, 84, 273, 411, 676, 790, 1052
BseGI GGATG 7 cut(s) 4, 93, 271, 601, 649, 814, 832
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 4 cut(s) 439, 713, 714, 741
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 699, 848
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 5 cut(s) 256, 332, 432, 693, 1086
BshNI GGYRCC 1 cut(s) 374
BshVI ATCGAT 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 2 cut(s) 13, 100
BslI CCNNNNNNNGG 4 cut(s) 439, 713, 714, 741
BsmAI GTCTC 2 cut(s) 26, 195
BsmBI CGTCTC 2 cut(s) 26, 195
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 982
Bsp1407I TGTACA 1 cut(s) 929
Bsp143I GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
Bsp19I CCATGG 3 cut(s) 69, 273, 1052
BspCNI CTCAG 2 cut(s) 698, 849
BspDI ATCGAT 1 cut(s) 339
BspHI TCATGA 2 cut(s) 799, 973
BspLI GGNNCC 6 cut(s) 75, 104, 376, 386, 621, 1062
BspPI GGATC 3 cut(s) 423, 614, 627
BspT104I TTCGAA 1 cut(s) 982
BspT107I GGYRCC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 929
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 7 cut(s) 69, 84, 273, 411, 676, 790, 1052
BssMI GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
BssNI GRCGYC 1 cut(s) 19
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 5 cut(s) 69, 273, 411, 676, 1052
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 289, 434, 633
Bst6I CTCTTC 4 cut(s) 190, 209, 350, 1028
BstACI GRCGYC 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 929
BstBI TTCGAA 1 cut(s) 982
BstC8I GCNNGC 4 cut(s) 137, 236, 939, 968
BstDEI CTNAG 2 cut(s) 685, 857
BstDSI CCRYGG 4 cut(s) 69, 84, 273, 1052
BstF5I GGATG 7 cut(s) 4, 93, 271, 601, 649, 814, 832
BstHHI GCGC 2 cut(s) 168, 558
BstKTI GATC 7 cut(s) 343, 405, 418, 622, 660, 805, 1047
BstMAI GTCTC 2 cut(s) 26, 195
BstMBI GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
BstMWI GCNNNNNNNGC 6 cut(s) 16, 25, 34, 132, 244, 320
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 2 cut(s) 666, 941
BstSCI CCNGG 1 cut(s) 790
BstV1I GCAGC 5 cut(s) 256, 332, 432, 693, 1086
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
Bsu15I ATCGAT 1 cut(s) 339
BsuI GTATCC 1 cut(s) 868
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 4 cut(s) 69, 84, 273, 1052
BtsCI GGATG 7 cut(s) 4, 93, 271, 601, 649, 814, 832
Cac8I GCNNGC 4 cut(s) 137, 236, 939, 968
CciI TCATGA 2 cut(s) 799, 973
CfoI GCGC 2 cut(s) 168, 558
Cfr10I RCCGGY 1 cut(s) 99
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 2 cut(s) 8, 43
Csp6I GTAC 3 cut(s) 42, 89, 930
CspCI CAANNNNNGTGG 1 cut(s) 1110
CviQI GTAC 3 cut(s) 42, 89, 930
DdeI CTNAG 2 cut(s) 685, 857
DpnI GATC 7 cut(s) 342, 404, 417, 621, 659, 804, 1046
DpnII GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
Eam1104I CTCTTC 4 cut(s) 190, 209, 350, 1028
EarI CTCTTC 4 cut(s) 190, 209, 350, 1028
EciI GGCGGA 3 cut(s) 49, 86, 199
Eco130I CCWWGG 5 cut(s) 69, 273, 411, 676, 1052
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 5 cut(s) 69, 273, 411, 676, 1052
EcoT22I ATGCAT 2 cut(s) 6, 939
ErhI CCWWGG 5 cut(s) 69, 273, 411, 676, 1052
Esp3I CGTCTC 2 cut(s) 26, 195
FauI CCCGC 2 cut(s) 33, 227
FbaI TGATCA 2 cut(s) 402, 802
Fnu4HI GCNGC 7 cut(s) 63, 66, 270, 321, 446, 682, 1075
FokI GGATG 6 cut(s) 80, 278, 608, 656, 819, 821
Fsp4HI GCNGC 7 cut(s) 63, 66, 270, 321, 446, 682, 1075
FspBI CTAG 3 cut(s) 677, 906, 959
GlaI GCGC 2 cut(s) 167, 557
GluI GCNGC 7 cut(s) 63, 66, 270, 321, 446, 682, 1075
HapII CCGG 2 cut(s) 13, 100
HgaI GACGC 2 cut(s) 8, 43
HhaI GCGC 2 cut(s) 168, 558
Hin1I GRCGYC 1 cut(s) 19
Hin6I GCGC 2 cut(s) 166, 556
HinP1I GCGC 2 cut(s) 166, 556
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 6 cut(s) 56, 80, 152, 919, 984, 1082
HpaII CCGG 2 cut(s) 13, 100
HphI GGTGA 3 cut(s) 40, 412, 422
Hpy166II GTNNAC 2 cut(s) 44, 902
Hpy188I TCNGA 2 cut(s) 688, 996
Hpy8I GTNNAC 2 cut(s) 44, 902
Hpy99I CGWCG 4 cut(s) 34, 37, 495, 1095
HpyAV CCTTC 3 cut(s) 256, 846, 989
HpyCH4III ACNGT 3 cut(s) 289, 434, 633
HpyCH4V TGCA 7 cut(s) 4, 448, 937, 941, 1074, 1103, 1132
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 25, 34, 132, 244, 320
HpyF3I CTNAG 2 cut(s) 685, 857
Hsp92I GRCGYC 1 cut(s) 19
HspAI GCGC 2 cut(s) 166, 556
Ksp22I TGATCA 2 cut(s) 402, 802
Kzo9I GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
LmnI GCTCC 5 cut(s) 42, 144, 328, 390, 442
Lsp1109I GCAGC 5 cut(s) 256, 332, 432, 693, 1086
LweI GCATC 5 cut(s) 13, 256, 586, 634, 1090
MaeI CTAG 3 cut(s) 677, 906, 959
MaeIII GTNAC 2 cut(s) 665, 774
MalI GATC 7 cut(s) 342, 404, 417, 621, 659, 804, 1046
MboI GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
MboII GAAGA 6 cut(s) 177, 196, 290, 337, 538, 1045
MflI RGATCY 1 cut(s) 619
MluCI AATT 9 cut(s) 217, 328, 580, 761, 866, 943, 997, 1027, 1069
MlyI GAGTC 2 cut(s) 50, 146
Mph1103I ATGCAT 2 cut(s) 6, 939
MseI TTAA 3 cut(s) 296, 360, 720
MspI CCGG 2 cut(s) 13, 100
MspR9I CCNGG 1 cut(s) 792
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 6 cut(s) 16, 25, 34, 132, 244, 320
NcoI CCATGG 3 cut(s) 69, 273, 1052
NdeII GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
NlaIV GGNNCC 6 cut(s) 75, 104, 376, 386, 621, 1062
NmuCI GTSAC 2 cut(s) 665, 774
NsiI ATGCAT 2 cut(s) 6, 939
NspI RCATGY 2 cut(s) 666, 941
NspV TTCGAA 1 cut(s) 982
PaeI GCATGC 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 350
PagI TCATGA 2 cut(s) 799, 973
PfeI GAWTC 4 cut(s) 80, 919, 984, 1082
PkrI GCNGC 7 cut(s) 64, 67, 271, 322, 447, 683, 1076
PleI GAGTC 2 cut(s) 50, 146
PpsI GAGTC 2 cut(s) 50, 146
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 6 cut(s) 75, 104, 376, 386, 621, 1062
PsuI RGATCY 1 cut(s) 619
RsaI GTAC 3 cut(s) 43, 90, 931
RsaNI GTAC 3 cut(s) 42, 89, 930
SaqAI TTAA 3 cut(s) 296, 360, 720
SatI GCNGC 7 cut(s) 63, 66, 270, 321, 446, 682, 1075
Sau3AI GATC 7 cut(s) 340, 402, 415, 619, 657, 802, 1044
SchI GAGTC 2 cut(s) 50, 146
ScrFI CCNGG 1 cut(s) 792
SfaNI GCATC 5 cut(s) 13, 256, 586, 634, 1090
Sfr274I CTCGAG 1 cut(s) 350
SfuI TTCGAA 1 cut(s) 982
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 3 cut(s) 350, 474, 566
SmoI CTYRAG 3 cut(s) 350, 474, 566
SphI GCATGC 1 cut(s) 941
Sse9I AATT 9 cut(s) 217, 328, 580, 761, 866, 943, 997, 1027, 1069
SspMI CTAG 3 cut(s) 677, 906, 959
StyD4I CCNGG 1 cut(s) 790
StyI CCWWGG 5 cut(s) 69, 273, 411, 676, 1052
TaaI ACNGT 3 cut(s) 289, 434, 633
TaqI TCGA 4 cut(s) 339, 351, 493, 982
TasI AATT 9 cut(s) 217, 328, 580, 761, 866, 943, 997, 1027, 1069
TatI WGTACW 1 cut(s) 929
TauI GCSGC 2 cut(s) 65, 68
TfiI GAWTC 4 cut(s) 80, 919, 984, 1082
Tru1I TTAA 3 cut(s) 296, 360, 720
Tru9I TTAA 3 cut(s) 296, 360, 720
TseFI GTSAC 2 cut(s) 665, 774
TseI GCWGC 5 cut(s) 269, 320, 445, 681, 1074
Tsp45I GTSAC 2 cut(s) 665, 774
TspDTI ATGAA 5 cut(s) 324, 788, 821, 878, 962
TspGWI ACGGA 6 cut(s) 29, 73, 297, 608, 726, 1079
XapI RAATTY 3 cut(s) 761, 866, 1027
XbaI TCTAGA 1 cut(s) 958
XceI RCATGY 2 cut(s) 666, 941
XhoI CTCGAG 1 cut(s) 350
XmaJI CCTAGG 1 cut(s) 676
XspI CTAG 3 cut(s) 677, 906, 959
Zsp2I ATGCAT 2 cut(s) 6, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.