AT1G14860

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013391
Physical Location & Seq
Forward (+)
5124670 .. 5126280
1611 bp
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UTR
Exon/CDS
Intron
AT1G14860.1

Sequence Viewer

Length: 531 bp
ATGGTGTGTTTGGTCTCCCGTACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGTCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGACGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCACGCTCTGATGTTCCCAAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCGTCAAGAGAATCTCTAGAAGAAGCTGGAGTTGTTGGAAACGTTGAGAGACAACTTGGAAAATGGGATTTCTTAAGCAAAAGCAAAGGAACATTCTATGAAGGATTCATGTTCCCAATGCTTGTGAAAGAAGAGCTTGAGCTTTGGCCTGAACAACATCTTCGTCAAAGAATTTGGATGAAAGTTGATGAAGCAAGAGACGCTTGTAGAGATTGGTGGATGAAGGAAGCGTTAGATGTTTTGGTCCAAAGGCTTTCTTTACTATCATTGAAGCCTATGGAAGAAGACGAGAACCTTCCACTGATCTCTATCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

176

Amino Acids

20.42

Weight (kDa)

5.24

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 40 - 148 2.4e-11 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14860 AT2G01670
fragaria_vesca FvH4_4g33680
malus_domestica MD13G1029200.v1.1 MD16G1019500.v1.1
prunus_persica Prupe.1G332500_v2.0.a1
pyrus_communis pycom13g01780 pycom16g01750
rosa_chinensis RchiOBHm_Chr4g0443161
rosa_laevigata RLG00000005951
rosa_multiflora Rmu_sc0007968.1_g000007
rosa_roxburghii Rroxscaffold_5G00383760
rosa_rugosa Rorug04G0344700
rosa_samantha Rh4AG399100 Rh4BG410700 Rh4CG426200 Rh4DG405800
rosa_wichuraiana Rw4G034410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 179
AclI AACGTT 1 cut(s) 255
AcsI RAATTY 2 cut(s) 122, 384
AcyI GRCGYC 1 cut(s) 58
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 179
AflII CTTAAG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 484
AluBI AGCT 5 cut(s) 190, 212, 239, 349, 355
AluI AGCT 5 cut(s) 190, 212, 239, 349, 355
Alw26I GTCTC 3 cut(s) 19, 256, 405
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 122, 384
AspS9I GGNCC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 19, 256, 405
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 286
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 504
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 74, 371
BsaBI GATNNNNATC 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 521
BseGI GGATG 2 cut(s) 396, 438
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 361
BsiWI CGTACG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 3 cut(s) 19, 256, 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 1 cut(s) 361
Bso31I GGTCTC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 516
BspANI GGCC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 339
BspTI CTTAAG 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 19
BssMI GATC 1 cut(s) 516
BssNI GRCGYC 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 396, 438
BstKTI GATC 1 cut(s) 519
BstMAI GTCTC 3 cut(s) 19, 256, 405
BstMBI GATC 1 cut(s) 516
BstMWI GCNNNNNNNGC 2 cut(s) 114, 413
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 504
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 396, 438
BtsIMutI CAGTG 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 3 cut(s) 47, 204, 422
Csp6I GTAC 1 cut(s) 21
CviAII CATG 1 cut(s) 322
CviJI RGCY 8 cut(s) 190, 212, 239, 349, 355, 361, 466, 487
CviKI_1 RGCY 8 cut(s) 190, 212, 239, 349, 355, 361, 466, 487
CviQI GTAC 1 cut(s) 21
DpnI GATC 1 cut(s) 518
DpnII GATC 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 1 cut(s) 325
FaiI YATR 4 cut(s) 82, 312, 323, 491
FalI AAGNNNNNCTT 6 cut(s) 333, 365, 400, 432, 454, 486
FaqI GGGAC 1 cut(s) 66
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 2 cut(s) 403, 445
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 361
HgaI GACGC 3 cut(s) 47, 204, 422
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 325
HinfI GANTC 4 cut(s) 87, 197, 224, 318
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 91, 219, 230
Hpy99I CGWCG 2 cut(s) 71, 122
HpyAV CCTTC 3 cut(s) 308, 430, 518
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 413
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 1 cut(s) 516
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 2 cut(s) 225, 375
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 518
MboI GATC 1 cut(s) 516
MboII GAAGA 6 cut(s) 218, 245, 356, 365, 506, 509
MluCI AATT 3 cut(s) 111, 122, 384
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 1 cut(s) 121
MseI TTAA 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 114, 413
NdeII GATC 1 cut(s) 516
NlaIII CATG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 339
PfeI GAWTC 3 cut(s) 197, 224, 318
Pfl23II CGTACG 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp1406I AACGTT 1 cut(s) 255
PspLI CGTACG 1 cut(s) 20
PspPI GGNCC 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 57
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 516
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 1 cut(s) 81
SetI ASST 8 cut(s) 132, 192, 214, 241, 258, 351, 357, 510
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 457
SmlI CTYRAG 3 cut(s) 89, 286, 350
SmoI CTYRAG 3 cut(s) 89, 286, 350
Sse9I AATT 3 cut(s) 111, 122, 384
SspMI CTAG 1 cut(s) 230
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 98
TasI AATT 3 cut(s) 111, 122, 384
TfiI GAWTC 3 cut(s) 197, 224, 318
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 7 cut(s) 132, 210, 310, 327, 407, 417, 449
TspRI CASTG 1 cut(s) 519
Tth111I GACNNNGTC 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 179
Vha464I CTTAAG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 2 cut(s) 122, 384
XbaI TCTAGA 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.