AT2G01670

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013391
Physical Location & Seq
Reverse (-)
296365 .. 298215
1851 bp
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UTR
Exon/CDS
Intron
AT2G01670.1

Sequence Viewer

Length: 549 bp
ATGGGTGTTGAGAAAATGGTGTGTTTAGCTTCTCGTACGGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCGTCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTATCTAATGATGGTAAAATAAGTGATGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGCCACGCCTTAATGTTCCCCAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCATCAAGAGAATGTCTTGAAGAAGCTGGAGTTCTTGGCAACGTTGAGCACCAACTTGGAAAATGGGATTTTTTAAGCAAAAGCAGAGGAACATACTATGAAGGACTAATGTTCCCTATGCTTGTTACAGAACAACTTGAGCTTTGGCCTGAACAACATGTTAGGCAAAGAATCTGGATGAATGTAACCGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGTTGAGAGACTTTCATCACCAATGAATCAACCAAAGGAAGAGAAGACTATGTCAATCTCTATTGAAACAATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

182

Amino Acids

21.05

Weight (kDa)

5.54

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 46 - 154 2.8e-11 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14860 AT2G01670
fragaria_vesca FvH4_4g33680
malus_domestica MD13G1029200.v1.1 MD16G1019500.v1.1
prunus_persica Prupe.1G332500_v2.0.a1
pyrus_communis pycom13g01780 pycom16g01750
rosa_chinensis RchiOBHm_Chr4g0443161
rosa_laevigata RLG00000005951
rosa_multiflora Rmu_sc0007968.1_g000007
rosa_roxburghii Rroxscaffold_5G00383760
rosa_rugosa Rorug04G0344700
rosa_samantha Rh4AG399100 Rh4BG410700 Rh4CG426200 Rh4DG405800
rosa_wichuraiana Rw4G034410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 270
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 3 cut(s) 106, 248, 536
AluBI AGCT 7 cut(s) 29, 109, 205, 227, 254, 370, 431
AluI AGCT 7 cut(s) 29, 109, 205, 227, 254, 370, 431
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 472
AoxI GGCC 2 cut(s) 169, 374
ApeKI GCWGC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 472
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmsI GCATC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 521
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 3 cut(s) 92, 411, 453
BseLI CCNNNNNNNGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 2 cut(s) 171, 376
BsiHKAI GWGCWC 1 cut(s) 279
BsiWI CGTACG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 472
BsnI GGCC 2 cut(s) 171, 376
Bsp1286I GDGCHC 1 cut(s) 279
BspANI GGCC 2 cut(s) 171, 376
BssECI CCNNGG 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 163, 504
BstF5I GGATG 3 cut(s) 92, 411, 453
BstMAI GTCTC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 521
BsuRI GGCC 2 cut(s) 171, 376
BtsCI GGATG 3 cut(s) 92, 411, 453
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 386
CviJI RGCY 9 cut(s) 29, 109, 171, 205, 227, 254, 370, 376, 431
CviKI_1 RGCY 9 cut(s) 29, 109, 171, 205, 227, 254, 370, 376, 431
CviQI GTAC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 163, 504
EarI CTCTTC 2 cut(s) 163, 504
Eco130I CCWWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 389
FaiI YATR 5 cut(s) 322, 327, 347, 387, 521
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 3 cut(s) 99, 418, 460
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 171, 376
Hin1II CATG 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 4 cut(s) 102, 212, 399, 496
HphI GGTGA 1 cut(s) 480
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 3 cut(s) 234, 245, 403
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 389
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 3 cut(s) 240, 388, 390
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 239
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 352, 412
MboII GAAGA 5 cut(s) 150, 233, 260, 521, 526
MhlI GDGCHC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 1 cut(s) 308
MseI TTAA 2 cut(s) 179, 302
MwoI GCNNNNNNNGC 1 cut(s) 428
NlaIII CATG 1 cut(s) 389
NspI RCATGY 1 cut(s) 389
PciI ACATGT 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PfeI GAWTC 4 cut(s) 102, 212, 399, 496
Pfl23II CGTACG 1 cut(s) 35
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 1 cut(s) 229
PscI ACATGT 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 270
PspLI CGTACG 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 520
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 179, 302
SatI GCNGC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 279
SetI ASST 9 cut(s) 31, 70, 111, 207, 229, 256, 273, 372, 433
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 273
TfiI GAWTC 4 cut(s) 102, 212, 399, 496
Tru1I TTAA 2 cut(s) 179, 302
Tru9I TTAA 2 cut(s) 179, 302
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 7 cut(s) 150, 225, 342, 422, 464, 474, 509
Tth111I GACNNNGTC 1 cut(s) 520
XceI RCATGY 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.