Rroxscaffold_5G00383760

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013391
Physical Location & Seq
Forward (+)
63345619 .. 63347501
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383760.1

Sequence Viewer

Length: 387 bp
ATGAATTGGGAGTTCCTTGTGATTACTTCACAGAAAGGCAATGCATTCATGTTCCCTAAGGGTGGTTGGGAACTTGATGAATCTGTAGAAGAAGCTGCTTCACGAGAGTCGCTAGAAGAAGCAGGTGTTCTTGGAAATGTTGAGTGTCAGTTGGGACAATGGAGTTTCATGAGCAAAAGCCATGACACATATTATGAAGGCTACATGTTCCCATTGTTTGTCAAGGAGCAACTGGATCTCTGGCCAGAGAAGAACGTACGACAACGCATTTGGATGACTGCTGCCAAAGCTAGAGAAGCTTGTCAACATTGGTGGATGAAGGAAGCCTTGGACATTTTGGTCGAGCGGCTTATCTCAGAACAGAAACAAAAGGATGAAGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

128

Amino Acids

15.1

Weight (kDa)

4.73

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 13 - 109 1e-08 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14860 AT2G01670
fragaria_vesca FvH4_4g33680
malus_domestica MD13G1029200.v1.1 MD16G1019500.v1.1
prunus_persica Prupe.1G332500_v2.0.a1
pyrus_communis pycom13g01780 pycom16g01750
rosa_chinensis RchiOBHm_Chr4g0443161
rosa_laevigata RLG00000005951
rosa_multiflora Rmu_sc0007968.1_g000007
rosa_roxburghii Rroxscaffold_5G00383760
rosa_rugosa Rorug04G0344700
rosa_samantha Rh4AG399100 Rh4BG410700 Rh4CG426200 Rh4DG405800
rosa_wichuraiana Rw4G034410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 113
AasI GACNNNNNNGTC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 346
AciI CCGC 1 cut(s) 346
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 242
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 95, 290, 299
AluI AGCT 3 cut(s) 95, 290, 299
AlwI GGATC 1 cut(s) 243
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 95, 281
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AxyI CCTNAGG 1 cut(s) 57
BalI TGGCCA 1 cut(s) 244
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 2 cut(s) 82, 268
BfaI CTAG 3 cut(s) 113, 291, 385
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 113
BisI GCNGC 3 cut(s) 96, 282, 347
BlsI GCNGC 3 cut(s) 97, 283, 348
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 3 cut(s) 279, 321, 379
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 82, 268
BshFI GGCC 1 cut(s) 244
BsiWI CGTACG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 368
BspHI TCATGA 1 cut(s) 168
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 235
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 57, 355
BstF5I GGATG 3 cut(s) 279, 321, 379
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 2 cut(s) 287, 296
BstNSI RCATGY 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 82, 268
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 279, 321, 379
BveI ACCTGC 1 cut(s) 113
CciI TCATGA 1 cut(s) 168
Csp6I GTAC 1 cut(s) 257
CspCI CAANNNNNGTGG 2 cut(s) 293, 328
CviAII CATG 4 cut(s) 49, 169, 182, 205
CviJI RGCY 8 cut(s) 95, 180, 201, 244, 290, 299, 326, 349
CviKI_1 RGCY 8 cut(s) 95, 180, 201, 244, 290, 299, 326, 349
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 2 cut(s) 57, 355
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 4 cut(s) 52, 172, 185, 208
FaiI YATR 6 cut(s) 50, 170, 183, 190, 195, 206
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 168
FatI CATG 4 cut(s) 48, 168, 181, 204
Fnu4HI GCNGC 3 cut(s) 96, 282, 347
FokI GGATG 2 cut(s) 286, 328
Fsp4HI GCNGC 3 cut(s) 96, 282, 347
FspBI CTAG 3 cut(s) 113, 291, 385
GluI GCNGC 3 cut(s) 96, 282, 347
HaeIII GGCC 1 cut(s) 244
Hin1II CATG 4 cut(s) 52, 172, 185, 208
HincII GTYRAC 1 cut(s) 305
HindII GTYRAC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 2 cut(s) 80, 107
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 102, 169
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 191, 313
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 296
HpyF3I CTNAG 2 cut(s) 57, 355
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 4 cut(s) 52, 172, 185, 208
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 108, 218, 226, 258
Lsp1109I GCAGC 2 cut(s) 82, 268
MaeI CTAG 3 cut(s) 113, 291, 385
MaeII ACGT 1 cut(s) 255
MalI GATC 1 cut(s) 237
MbiI CCGCTC 1 cut(s) 346
MboI GATC 1 cut(s) 235
MboII GAAGA 3 cut(s) 101, 128, 262
MflI RGATCY 1 cut(s) 235
MlsI TGGCCA 1 cut(s) 244
MluCI AATT 1 cut(s) 4
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 1 cut(s) 116
Mox20I TGGCCA 1 cut(s) 244
Mph1103I ATGCAT 1 cut(s) 46
MscI TGGCCA 1 cut(s) 244
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 287, 296
NdeII GATC 1 cut(s) 235
NlaIII CATG 4 cut(s) 52, 172, 185, 208
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 1 cut(s) 208
PagI TCATGA 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 113
PciI ACATGT 1 cut(s) 204
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 80
Pfl23II CGTACG 1 cut(s) 256
PkrI GCNGC 3 cut(s) 97, 283, 348
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PscI ACATGT 1 cut(s) 204
PspLI CGTACG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 3 cut(s) 96, 282, 347
Sau3AI GATC 1 cut(s) 235
SchI GAGTC 1 cut(s) 116
SetI ASST 5 cut(s) 97, 127, 258, 292, 301
SfcI CTRYAG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 4
SsiI CCGC 1 cut(s) 346
SspMI CTAG 3 cut(s) 113, 291, 385
StyI CCWWGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 342
TasI AATT 1 cut(s) 4
TauI GCSGC 1 cut(s) 349
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 2 cut(s) 95, 281
TspDTI ATGAA 6 cut(s) 17, 37, 93, 157, 210, 332
XceI RCATGY 1 cut(s) 208
XspI CTAG 3 cut(s) 113, 291, 385
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.