Prupe.1G332500_v2.0.a1

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013391
Physical Location & Seq
Reverse (-)
31490568 .. 31492533
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G332500.1

Sequence Viewer

Length: 522 bp
ATGGCTTGTTTGGTTGCTCGGACGGGAAGGGAATTGCAGAGGTACAACATGGGCCGCCGACAGGTCGTAGGATGCATTCCTTATAGATACAAAAATGGCCGTGATGGTGCGATCAGCGATGAATTGGAAGTGCTTGTGATCACTTCACAGAAAGGCAATGCATTTATGTTCCCTAAGGGTGGTTGGGAACTTGATGAATCCGTAGAAGAAGCTGCTTCACGGGAATCACTAGAAGAAGCGGGTGTTGTGGGCAATGTTGAGTGTGAATTGGGAAAATGGAGTTTCATGAGCAAAAGCCAGGAGACATACTATGAAGGGTACATGTTCCCTTTGTTTGTGAAGGAGCAACTGGATCTATGGCCCGAGAAGAACGTTCGGCGAAGAATCTGGATGAGTGCTGCGAAAGCTAGAGAAGCTTGTCAGCATTGGTGGATGAAGGAAGCCTTGGACATTTTGGTTGAACGGCTTACCTCAGCACAGAAACAAGAGGAAGAAAATGCACTGGCTTGCTCTTTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

174

Amino Acids

19.9

Weight (kDa)

5.27

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14860 AT2G01670
fragaria_vesca FvH4_4g33680
malus_domestica MD13G1029200.v1.1 MD16G1019500.v1.1
prunus_persica Prupe.1G332500_v2.0.a1
pyrus_communis pycom13g01780 pycom16g01750
rosa_chinensis RchiOBHm_Chr4g0443161
rosa_laevigata RLG00000005951
rosa_multiflora Rmu_sc0007968.1_g000007
rosa_roxburghii Rroxscaffold_5G00383760
rosa_rugosa Rorug04G0344700
rosa_samantha Rh4AG399100 Rh4BG410700 Rh4CG426200 Rh4DG405800
rosa_wichuraiana Rw4G034410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 55, 239
AclI AACGTT 1 cut(s) 372
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 2 cut(s) 44, 320
AfiI CCNNNNNNNGG 2 cut(s) 61, 179
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 461
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 3 cut(s) 212, 407, 416
AluI AGCT 3 cut(s) 212, 407, 416
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 3 cut(s) 52, 97, 359
ApeKI GCWGC 2 cut(s) 212, 398
AspS9I GGNCC 2 cut(s) 52, 360
AvaI CYCGRG 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 199, 385
BccI CCATC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 84, 479
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 2 cut(s) 230, 408
BisI GCNGC 3 cut(s) 55, 213, 399
BlsI GCNGC 3 cut(s) 56, 214, 400
Bme1390I CCNGG 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 52, 360
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 472
BsaJI CCNNGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 179
Bse1I ACTGG 2 cut(s) 354, 507
Bse21I CCTNAGG 1 cut(s) 174
Bse3DI GCAATG 2 cut(s) 163, 259
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 3 cut(s) 77, 396, 438
BseLI CCNNNNNNNGG 2 cut(s) 61, 179
BseMI GCAATG 2 cut(s) 163, 259
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 354, 507
BseXI GCAGC 2 cut(s) 199, 385
BshFI GGCC 3 cut(s) 54, 99, 361
BsiHKCI CYCGRG 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 61, 179
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 3 cut(s) 54, 99, 361
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 3 cut(s) 111, 138, 352
BspACI CCGC 2 cut(s) 55, 239
BspANI GGCC 3 cut(s) 54, 99, 361
BspCNI CTCAG 1 cut(s) 485
BspHI TCATGA 1 cut(s) 285
BspPI GGATC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 163, 259
BsrI ACTGG 2 cut(s) 354, 507
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 3 cut(s) 111, 138, 352
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 174, 472
BstF5I GGATG 3 cut(s) 77, 396, 438
BstKTI GATC 3 cut(s) 114, 141, 355
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 111, 138, 352
BstMWI GCNNNNNNNGC 2 cut(s) 404, 413
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 199, 385
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 3 cut(s) 54, 99, 361
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 3 cut(s) 77, 396, 438
BtsIMutI CAGTG 1 cut(s) 500
Cac8I GCNNGC 1 cut(s) 508
CciI TCATGA 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 52, 360
Csp6I GTAC 2 cut(s) 43, 319
CviAII CATG 3 cut(s) 49, 286, 322
CviQI GTAC 2 cut(s) 43, 319
DdeI CTNAG 2 cut(s) 174, 472
DpnI GATC 3 cut(s) 113, 140, 354
DpnII GATC 3 cut(s) 111, 138, 352
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 444
Eco81I CCTNAGG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 2 cut(s) 77, 163
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 52, 289, 325
FaiI YATR 8 cut(s) 50, 84, 167, 287, 307, 312, 323, 358
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FatI CATG 3 cut(s) 48, 285, 321
FauI CCCGC 1 cut(s) 232
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 55, 213, 399
FokI GGATG 3 cut(s) 84, 403, 445
Fsp4HI GCNGC 3 cut(s) 55, 213, 399
FspBI CTAG 2 cut(s) 230, 408
GluI GCNGC 3 cut(s) 55, 213, 399
HaeIII GGCC 3 cut(s) 54, 99, 361
Hin1II CATG 3 cut(s) 52, 289, 325
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 3 cut(s) 197, 224, 384
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 286, 388
HpyAV CCTTC 4 cut(s) 21, 308, 334, 430
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 37, 75, 161, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 413
HpyF3I CTNAG 2 cut(s) 174, 472
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 3 cut(s) 52, 289, 325
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 111, 138, 352
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 6 cut(s) 47, 284, 311, 335, 373, 488
Lsp1109I GCAGC 2 cut(s) 199, 385
LweI GCATC 1 cut(s) 62
MaeI CTAG 2 cut(s) 230, 408
MaeII ACGT 1 cut(s) 372
MalI GATC 3 cut(s) 113, 140, 354
MboI GATC 3 cut(s) 111, 138, 352
MboII GAAGA 5 cut(s) 218, 245, 379, 393, 503
MflI RGATCY 1 cut(s) 352
MluCI AATT 3 cut(s) 32, 122, 266
MnlI CCTC 3 cut(s) 33, 481, 481
Mph1103I ATGCAT 2 cut(s) 77, 163
MseI TTAA 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 404, 413
NdeII GATC 3 cut(s) 111, 138, 352
NlaIII CATG 3 cut(s) 52, 289, 325
NsiI ATGCAT 2 cut(s) 77, 163
NspI RCATGY 1 cut(s) 325
PagI TCATGA 1 cut(s) 285
PciI ACATGT 1 cut(s) 321
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 197, 224, 384
PkrI GCNGC 3 cut(s) 56, 214, 400
PscI ACATGT 1 cut(s) 321
Psp1406I AACGTT 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspPI GGNCC 2 cut(s) 52, 360
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 44, 320
RsaNI GTAC 2 cut(s) 43, 319
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 3 cut(s) 55, 213, 399
Sau3AI GATC 3 cut(s) 111, 138, 352
Sau96I GGNCC 2 cut(s) 52, 360
ScrFI CCNGG 1 cut(s) 299
SetI ASST 7 cut(s) 44, 66, 214, 375, 409, 418, 473
SfaNI GCATC 1 cut(s) 62
Sse9I AATT 3 cut(s) 32, 122, 266
SsiI CCGC 2 cut(s) 55, 239
SspMI CTAG 2 cut(s) 230, 408
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 444
TaiI ACGT 1 cut(s) 375
TasI AATT 3 cut(s) 32, 122, 266
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 3 cut(s) 197, 224, 384
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 1 cut(s) 507
TseI GCWGC 2 cut(s) 212, 398
TspDTI ATGAA 5 cut(s) 135, 210, 274, 327, 449
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 507
XceI RCATGY 1 cut(s) 325
XspI CTAG 2 cut(s) 230, 408
Zsp2I ATGCAT 2 cut(s) 77, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.