AT1G14980

Belongs to the GroES chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009151
Physical Location & Seq
Reverse (-)
5165489 .. 5166939
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14980.1

Sequence Viewer

Length: 297 bp
ATGATGAAGCGTCTGATCCCAACGTTCAACCGCATCTTGGTGCAGAGAGTCATCCAGCCCGCTAAAACCGAAAGCGGCATTCTCCTACCTGAGAAATCCTCCAAGCTGAACTCAGGCAAGGTGATAGCTGTTGGACCTGGATCAAGGGATAAGGACGGGAAATTGATTCCGGTCTCTGTGAAGGAAGGCGACACTGTTCTTCTTCCAGAGTACGGTGGTACACAGGTCAAGCTCGGCGAGAACGAGTACCATCTCTTCCGGGACGAGGATGTTTTGGGAACTTTGCACGAGGATTGA

Protein Analysis

98

Amino Acids

10.81

Weight (kDa)

6.74

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn10 PF00166 5 - 94 5.1e-26 Chaperonin 10 Kd subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 31, 60, 75
AclI AACGTT 1 cut(s) 23
AclWI GGATC 2 cut(s) 10, 148
AfaI GTAC 3 cut(s) 212, 220, 248
AfiI CCNNNNNNNGG 3 cut(s) 37, 212, 265
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 106, 128, 232
AluI AGCT 3 cut(s) 106, 128, 232
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 10, 148
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 134
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BauI CACGAG 1 cut(s) 287
BccI CCATC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 138, 260
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 2 cut(s) 138, 260
BmsI GCATC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuMI CCSGG 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 212, 265
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 51, 274
BseLI CCNNNNNNNGG 3 cut(s) 37, 212, 265
BseMII CTCAG 2 cut(s) 81, 126
BsgI GTGCAG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 170, 259
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 3 cut(s) 37, 212, 265
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 15, 140
BspACI CCGC 3 cut(s) 31, 60, 75
BspCNI CTCAG 2 cut(s) 82, 125
BspPI GGATC 2 cut(s) 10, 148
BspTNI GGTCTC 1 cut(s) 178
BssMI GATC 2 cut(s) 15, 140
BssSI CACGAG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 196, 215
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 90, 112
BstF5I GGATG 2 cut(s) 51, 274
BstKTI GATC 2 cut(s) 18, 143
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 15, 140
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 136, 258
BtsCI GGATG 2 cut(s) 51, 274
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 211, 219, 247
CviJI RGCY 4 cut(s) 58, 106, 128, 232
CviKI_1 RGCY 4 cut(s) 58, 106, 128, 232
CviQI GTAC 3 cut(s) 211, 219, 247
DdeI CTNAG 2 cut(s) 90, 112
DpnI GATC 2 cut(s) 17, 142
DpnII GATC 2 cut(s) 15, 140
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 136
FaqI GGGAC 1 cut(s) 275
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 2 cut(s) 38, 281
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
HapII CCGG 2 cut(s) 170, 259
HinfI GANTC 2 cut(s) 48, 166
HpaII CCGG 2 cut(s) 170, 259
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 175, 179
HpyCH4III ACNGT 2 cut(s) 196, 215
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 43, 286
HpyF3I CTNAG 2 cut(s) 90, 112
HpySE526I ACGT 1 cut(s) 23
Kzo9I GATC 2 cut(s) 15, 140
LpnPI CCDG 9 cut(s) 68, 99, 102, 123, 150, 183, 209, 219, 272
LweI GCATC 1 cut(s) 42
MaeII ACGT 1 cut(s) 23
MalI GATC 2 cut(s) 17, 142
MboI GATC 2 cut(s) 15, 140
MboII GAAGA 3 cut(s) 191, 194, 247
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 3 cut(s) 109, 259, 283
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 2 cut(s) 170, 259
MspR9I CCNGG 2 cut(s) 138, 260
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 1 cut(s) 138
NciI CCSGG 1 cut(s) 260
NdeII GATC 2 cut(s) 15, 140
NmeAIII GCCGAG 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 134
RsaI GTAC 3 cut(s) 212, 220, 248
RsaNI GTAC 3 cut(s) 211, 219, 247
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 15, 140
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 138, 260
SetI ASST 8 cut(s) 26, 91, 108, 123, 130, 139, 228, 234
SfaNI GCATC 1 cut(s) 42
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 161
SsiI CCGC 3 cut(s) 31, 60, 75
StyD4I CCNGG 2 cut(s) 136, 258
TaaI ACNGT 2 cut(s) 196, 215
TaiI ACGT 1 cut(s) 26
TasI AATT 1 cut(s) 161
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 166
TscAI CASTG 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.