Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009151

Physical Location & Seq

Genomic Coordinates Reverse (-)

17970290 .. 17972562

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCGAAGCGTCTGGTTCCACTCTTGAATCGCGTTCTCGTTGAGAGAATCGTCCCTCCGTCGAAAACCACCACCGGAATCTTACTTCCGGAGAAATCCGCCAAGCTGAACTCTGGAAAAGTTGTTGCTGTGGGTCCTGGCACTCGCGATAAGGAGGGACAGTTCATCCCCGCCACTGTGAAGGAAGGAGACACTGTTCTGCTGCCAGAGTATGGAGGAACTGAAGTGAAGCTTGGTGACAAAGAGTACCAGCTATATCGGGATGAGGATATACTGGGAACACTGCACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010033 GO:0031974 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

98

Amino Acids

10.59

Weight (kDa)

6.59

Isoelectric Point (pI)

24.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	5 - 94	1.2e-26	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14980 AT1G14980 AT1G23100
fragaria_vesca	FvH4_4g32620
malus_domestica	MD09G1260100.v1.1 MD13G1024100.v1.1 MD16G1026800.v1.1
prunus_persica	Prupe.1G326400_v2.0.a1 Prupe.1G326400_v2.0.a1 Prupe.3G151700_v2.0.a1 Prupe.7G030600_v2.0.a1
pyrus_communis	pycom09g17470 pycom16g02260
rosa_chinensis	RchiOBHm_Chr4g0441491
rosa_multiflora	Rmu_sc0000353.1_g000043
rosa_roxburghii	Rroxscaffold_5G00382350
rosa_rugosa	Rorug04G0334200
rosa_samantha	Rh4AG385600 Rh4BG399700 Rh4CG414700 Rh4DG392400
rosa_wichuraiana	Rw4G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	2 cut(s)	33, 147
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	2 cut(s)	99, 171
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AloI	GAACNNNNNNTCC	4 cut(s)	146, 178, 180, 212
AluBI	AGCT	3 cut(s)	106, 232, 253
AluI	AGCT	3 cut(s)	106, 232, 253
Alw26I	GTCTC	1 cut(s)	183
Aor13HI	TCCGGA	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	18, 135
BmrFI	CCNGG	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	284
BsaWI	WCCGGW	2 cut(s)	74, 88
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	165, 268
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	269
Bsh1236I	CGCG	2 cut(s)	33, 147
BsiSI	CCGG	2 cut(s)	75, 89
BslFI	GGGAC	2 cut(s)	38, 171
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	38, 171
Bsp13I	TCCGGA	1 cut(s)	88
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	2 cut(s)	99, 171
BspEI	TCCGGA	1 cut(s)	88
BspFNI	CGCG	2 cut(s)	33, 147
BspLI	GGNNCC	2 cut(s)	18, 135
BsrI	ACTGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	3 cut(s)	162, 178, 196
BstF5I	GGATG	2 cut(s)	165, 268
BstFNI	CGCG	2 cut(s)	33, 147
BstMAI	GTCTC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstUI	CGCG	2 cut(s)	33, 147
BstV1I	GCAGC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	165, 268
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	3 cut(s)	174, 192, 281
BtuMI	TCGCGA	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	247
CviJI	RGCY	3 cut(s)	106, 232, 253
CviKI_1	RGCY	3 cut(s)	106, 232, 253
CviQI	GTAC	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	136
FaiI	YATR	3 cut(s)	213, 256, 272
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	38, 171
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	152, 275
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
HapII	CCGG	2 cut(s)	75, 89
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	3 cut(s)	28, 48, 78
HpaII	CCGG	2 cut(s)	75, 89
HphI	GGTGA	1 cut(s)	248
Hpy188III	TCNNGA	5 cut(s)	25, 89, 114, 146, 260
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	175, 179
HpyCH4III	ACNGT	3 cut(s)	162, 178, 196
HpyCH4V	TGCA	1 cut(s)	286
Kpn2I	TCCGGA	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	88, 99, 102, 123, 150, 219, 260, 263
Lsp1109I	GCAGC	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	66, 148, 209, 259
MroI	TCCGGA	1 cut(s)	88
MspI	CCGG	2 cut(s)	75, 89
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	2 cut(s)	33, 147
NlaIV	GGNNCC	2 cut(s)	18, 135
NmuCI	GTSAC	1 cut(s)	236
NruI	TCGCGA	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	28, 48, 78
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	18, 135
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	203
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	3 cut(s)	108, 234, 255
SinI	GGWCC	1 cut(s)	134
SsiI	CCGC	2 cut(s)	99, 171
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	3 cut(s)	162, 178, 196
TaqI	TCGA	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	28, 48, 78
TscAI	CASTG	3 cut(s)	181, 199, 288
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	3 cut(s)	181, 199, 288
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.