Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009151

Physical Location & Seq

Genomic Coordinates Forward (+)

31220989 .. 31222238

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCCAAGCGTCTGATCCCAACTCTCAACCGTGTCCTGATCGAGAAAATCGTCCCACCCTCCAAAACTACCGCCGGCATTCTCTTGCCGGAGTCATCCGCCAAGCTTAACTCAGGGAAGGTGGTTGCTGTTGGGCCAGGAACGATAGATAAGGCTGGAAATTCGATCCCAGTGGCTGTGAAGGAAGGTGACACTGTTCTTTTGCCCGATTATGGAGGCACCCAAGTGAAGCTTGGTGACAAAGAGTTCCATTTGTTCCGGGATGAGGACATTTTGGGCACTCTCCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010033 GO:0031974 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

98

Amino Acids

10.29

Weight (kDa)

6.73

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	5 - 94	6.4e-25	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14980 AT1G14980 AT1G23100
fragaria_vesca	FvH4_4g32620
malus_domestica	MD09G1260100.v1.1 MD13G1024100.v1.1 MD16G1026800.v1.1
prunus_persica	Prupe.1G326400_v2.0.a1 Prupe.1G326400_v2.0.a1 Prupe.3G151700_v2.0.a1 Prupe.7G030600_v2.0.a1
pyrus_communis	pycom09g17470 pycom16g02260
rosa_chinensis	RchiOBHm_Chr4g0441491
rosa_multiflora	Rmu_sc0000353.1_g000043
rosa_roxburghii	Rroxscaffold_5G00382350
rosa_rugosa	Rorug04G0334200
rosa_samantha	Rh4AG385600 Rh4BG399700 Rh4CG414700 Rh4DG392400
rosa_wichuraiana	Rw4G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	2 cut(s)	72, 99
AclWI	GGATC	2 cut(s)	10, 160
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	160
AfiI	CCNNNNNNNGG	2 cut(s)	212, 265
AjnI	CCWGG	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	2 cut(s)	106, 232
AluI	AGCT	2 cut(s)	106, 232
AlwI	GGATC	2 cut(s)	10, 160
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	3, 134
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	200, 248
BaeGI	GKGCMC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	138, 260
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	138, 260
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 265
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	95, 268
BseLI	CCNNNNNNNGG	2 cut(s)	212, 265
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	281
BshFI	GGCC	2 cut(s)	5, 136
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	75, 89, 259
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	212, 265
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	5, 136
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	15, 39, 165
BspACI	CCGC	2 cut(s)	72, 99
BspANI	GGCC	2 cut(s)	5, 136
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	10, 160
BspT107I	GGYRCC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	3 cut(s)	15, 39, 165
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	32, 196
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	95, 268
BstKTI	GATC	3 cut(s)	18, 42, 168
BstMBI	GATC	3 cut(s)	15, 39, 165
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	136, 258
BstSLI	GKGCMC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	5, 136
BtsCI	GGATG	2 cut(s)	95, 268
BtsIMutI	CAGTG	2 cut(s)	177, 192
Cac8I	GCNNGC	1 cut(s)	76
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	134
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	6 cut(s)	5, 106, 136, 155, 176, 232
CviKI_1	RGCY	6 cut(s)	5, 106, 136, 155, 176, 232
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	3 cut(s)	17, 41, 167
DpnII	GATC	3 cut(s)	15, 39, 165
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	290
FaiI	YATR	2 cut(s)	213, 288
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	286
FokI	GGATG	2 cut(s)	82, 275
HaeIII	GGCC	2 cut(s)	5, 136
HapII	CCGG	3 cut(s)	75, 89, 259
Hin1II	CATG	1 cut(s)	290
HindIII	AAGCTT	2 cut(s)	104, 230
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	3 cut(s)	75, 89, 259
HphI	GGTGA	2 cut(s)	200, 248
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	37, 43
HpyAV	CCTTC	3 cut(s)	112, 175, 179
HpyCH4III	ACNGT	2 cut(s)	32, 196
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	15, 39, 165
LpnPI	CCDG	9 cut(s)	50, 88, 99, 102, 123, 141, 150, 183, 272
MaeIII	GTNAC	2 cut(s)	188, 236
MalI	GATC	3 cut(s)	17, 41, 167
MboI	GATC	3 cut(s)	15, 39, 165
MhlI	GDGCHC	1 cut(s)	281
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	70, 209, 259
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	75, 89, 259
MspR9I	CCNGG	2 cut(s)	138, 260
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	138
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	15, 39, 165
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	188, 236
OliI	CACNNNNGTG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	258
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	15, 39, 165
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	138, 260
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	4 cut(s)	108, 123, 190, 234
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	72, 99
StyD4I	CCNGG	2 cut(s)	136, 258
TaaI	ACNGT	2 cut(s)	32, 196
TaqI	TCGA	2 cut(s)	42, 164
TasI	AATT	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	177, 199
TseFI	GTSAC	2 cut(s)	188, 236
Tsp45I	GTSAC	2 cut(s)	188, 236
TspRI	CASTG	2 cut(s)	177, 199
XapI	RAATTY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.