Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009151

Physical Location & Seq

Genomic Coordinates Reverse (-)

1717699 .. 1718791

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1024100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCGAGGCGTTTGATCCCAACTCTCAACCGCGTCCTGATCGAGAAAATCATCCCGCCCTCCAAAACCACCGCTGGCATTCTCCTCCCCGAGTCATCCACCAAGCTAAACTCAGGGAAGGTGGTAGCTGTGGGACCAGGAGCCAAGGACAAGGCCGGGAATTTGATTCCGGTGGCCGTGAAAGAAGGCGATACGGTTCTCTTGCCCGAGTATGGAGGCACCGAAGTGAAGCTTGGTGACAAAGAGTTCCATTTATACAGGGACGAGGACATCTTGGGCACTCTCCACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010033 GO:0031974 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

98

Amino Acids

10.4

Weight (kDa)

6.73

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	5 - 94	4.7e-25	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14980 AT1G14980 AT1G23100
fragaria_vesca	FvH4_4g32620
malus_domestica	MD09G1260100.v1.1 MD13G1024100.v1.1 MD16G1026800.v1.1
prunus_persica	Prupe.1G326400_v2.0.a1 Prupe.1G326400_v2.0.a1 Prupe.3G151700_v2.0.a1 Prupe.7G030600_v2.0.a1
pyrus_communis	pycom09g17470 pycom16g02260
rosa_chinensis	RchiOBHm_Chr4g0441491
rosa_multiflora	Rmu_sc0000353.1_g000043
rosa_roxburghii	Rroxscaffold_5G00382350
rosa_rugosa	Rorug04G0334200
rosa_samantha	Rh4AG385600 Rh4BG399700 Rh4CG414700 Rh4DG392400
rosa_wichuraiana	Rw4G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	33
AciI	CCGC	3 cut(s)	31, 56, 72
AclWI	GGATC	1 cut(s)	10
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	106, 128, 232
AluI	AGCT	3 cut(s)	106, 128, 232
AlwI	GGATC	1 cut(s)	10
Ama87I	CYCGRG	2 cut(s)	89, 206
AoxI	GGCC	2 cut(s)	153, 174
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	2 cut(s)	89, 206
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	138, 157
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	2 cut(s)	89, 206
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	135, 142, 220
BmrFI	CCNGG	2 cut(s)	138, 157
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	51, 95
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	155, 176
BshNI	GGYRCC	1 cut(s)	218
BsiHKCI	CYCGRG	2 cut(s)	89, 206
BsiSI	CCGG	2 cut(s)	156, 170
BslFI	GGGAC	2 cut(s)	147, 275
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	147, 275
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	155, 176
BsoBI	CYCGRG	2 cut(s)	89, 206
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	15, 39
BspACI	CCGC	3 cut(s)	31, 56, 72
BspANI	GGCC	2 cut(s)	155, 176
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	135, 142, 220
BspPI	GGATC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	15, 39
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	51, 95
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	18, 42
BstMBI	GATC	2 cut(s)	15, 39
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	136, 155
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	155, 176
BtsCI	GGATG	2 cut(s)	51, 95
Cac8I	GCNNGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	22
CviJI	RGCY	6 cut(s)	106, 128, 143, 155, 176, 232
CviKI_1	RGCY	6 cut(s)	106, 128, 143, 155, 176, 232
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	2 cut(s)	17, 41
DpnII	GATC	2 cut(s)	15, 39
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	89, 206
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaiI	YATR	2 cut(s)	213, 256
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	147, 275
FauI	CCCGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	38, 82
HaeIII	GGCC	2 cut(s)	155, 176
HapII	CCGG	2 cut(s)	156, 170
HgaI	GACGC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	92, 166
HpaII	CCGG	2 cut(s)	156, 170
HphI	GGTGA	1 cut(s)	248
Hpy188III	TCNNGA	2 cut(s)	37, 43
HpyAV	CCTTC	2 cut(s)	112, 179
HpyCH4III	ACNGT	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	15, 39
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	8 cut(s)	50, 60, 99, 123, 150, 169, 183, 244
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	17, 41
MboI	GATC	2 cut(s)	15, 39
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	4 cut(s)	70, 95, 209, 259
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	156, 170
MspR9I	CCNGG	2 cut(s)	138, 157
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	15, 39
NlaIV	GGNNCC	3 cut(s)	135, 142, 220
NmuCI	GTSAC	1 cut(s)	236
OliI	CACNNNNGTG	1 cut(s)	224
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	3 cut(s)	135, 142, 220
PspPI	GGNCC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	15, 39
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	138, 157
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	4 cut(s)	108, 123, 130, 234
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	3 cut(s)	31, 56, 72
StyD4I	CCNGG	2 cut(s)	136, 155
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.