Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009151

Physical Location & Seq

Genomic Coordinates Forward (+)

50854062 .. 50857901

Gene Structure 3840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0334200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTATTTGTCCGAAAAGCCTCACCCGGTTGATTTTCACAAAGGGGACGAAGGCGGCGAGGACATGATGATTGAGGTGGTTCCGAATGAGGATGTTTCCCAAACCCATCACCGGAATCAGCATCACCAATTGCTGCTATTGGGGGACAGTAGCGGCAGTGGGGAGGACCACGAAGCTAAGCCCCAGAAAAAGAGAGCCGAAACTTGGGTGCAGGATGAGACTCGGAGTTTGATAGCTCTGCGCCGAGAAATGGACAGCATGTTCAACACTTCCAAGTCTAACAAGCACTTGTGGGAGCAGATTTCGGCGAAAATGAGGGAGAAAGGGTTCGACCGCAATCCCAATATGTGCACTGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCCAAGCATAATCATGACAGGGGGAGTGGCTCGGCTAAGATGTCATATTATAAAGAGATTGAGGAGATTTTGAAAGAAAGAAACAAGAATGGTCAGTACAAAAGCCCTACTCCGCCCAAGGTTGATTCTTTTATGCAGTTCTCAGATAAAGGGATGGAAGATACAAACATTTCCTTTGCACATGTGGAAGCTAATGGCAGGCCAACACTCAATCTCGAGACAGGTTTGGACCATGATGGTCATCCTCTTGCCATTACTGCTGCTGATGCAGTTGCAGCAAATGGAGTTGCACCTTGGAATTGGAGAGAGACCCCTGAAAATGGTGGTGAGAATCAATCATATGGCGGGAGAGTCATAGTAGTAACCTGGGGTGATTATACTCGGAGGATTGGAATTGATGGCTCGGCAGATGCCATTAAGGAGGCCATCAAATCTGCTTTTAGGTTGAGAACAAAACGCGCCTTCTGGTTGGAGGATGAAGACCAAATTGTCCGAAGTCTTGACAGGGACATGCCTCTGGGAAATTACACCCTTCATCTTGACGAAGGGTTGGCTGTAAAAGTGTGCCTGTATGATGAGCCAGAAAACATACCCGTACATACAGAGGAGAAGATTTTTTACACCGAAGATGATTATCATGAATTCCTAACCCGCCGTGGGTGGACATGTTTGCGGGAGTTTGATGGGTACAGAAATATCGAAAATATGGATGATCTTCGACCTGGTGCAATATATCGTGGTGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010033 GO:0031974 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

379

Amino Acids

43.57

Weight (kDa)

5.63

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	68 - 153	6.4e-22	Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1	PF26214	247 - 307	9.1e-09	GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1	PF26214	312 - 377	8.2e-34	GT-1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14980 AT1G14980 AT1G23100
fragaria_vesca	FvH4_4g32620
malus_domestica	MD09G1260100.v1.1 MD13G1024100.v1.1 MD16G1026800.v1.1
prunus_persica	Prupe.1G326400_v2.0.a1 Prupe.1G326400_v2.0.a1 Prupe.3G151700_v2.0.a1 Prupe.7G030600_v2.0.a1
pyrus_communis	pycom09g17470 pycom16g02260
rosa_chinensis	RchiOBHm_Chr4g0441491
rosa_multiflora	Rmu_sc0000353.1_g000043
rosa_roxburghii	Rroxscaffold_5G00382350
rosa_rugosa	Rorug04G0334200
rosa_samantha	Rh4AG385600 Rh4BG399700 Rh4CG414700 Rh4DG392400
rosa_wichuraiana	Rw4G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AasI	GACNNNNNNGTC	1 cut(s)	878
AccII	CGCG	1 cut(s)	849
AciI	CCGC	7 cut(s)	54, 153, 334, 503, 735, 1042, 1063
AcsI	RAATTY	1 cut(s)	1031
AfaI	GTAC	3 cut(s)	488, 987, 1079
AfiI	CCNNNNNNNGG	5 cut(s)	111, 204, 250, 710, 1047
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	2 cut(s)	571, 1055
AgsI	TTSAA	3 cut(s)	265, 385, 463
AjnI	CCWGG	2 cut(s)	755, 1111
AloI	GAACNNNNNNTCC	4 cut(s)	245, 277, 311, 343
AluBI	AGCT	3 cut(s)	176, 236, 581
AluI	AGCT	3 cut(s)	176, 236, 581
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	212, 602, 692
Alw44I	GTGCAC	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	3 cut(s)	390, 590, 813
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	133, 650, 665
ApoI	RAATTY	1 cut(s)	1031
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	243, 851
AspS9I	GGNCC	2 cut(s)	166, 619
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	5 cut(s)	14, 101, 116, 728, 773
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	2 cut(s)	166, 619
BaeGI	GKGCMC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	992, 1024
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	120, 637, 677
BccI	CCATC	6 cut(s)	114, 538, 620, 782, 824, 1067
BceAI	ACGGC	1 cut(s)	1029
BciT130I	CCWGG	2 cut(s)	757, 1113
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	212, 602, 692
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	55, 134, 154, 651, 666
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	5 cut(s)	56, 135, 155, 652, 667
Bme1390I	CCNGG	3 cut(s)	26, 757, 1113
Bme18I	GGWCC	2 cut(s)	166, 619
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	166, 619
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	3 cut(s)	26, 757, 1113
BmsI	GCATC	3 cut(s)	130, 646, 790
BpiI	GAAGAC	1 cut(s)	876
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	2 cut(s)	630, 1023
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	4 cut(s)	507, 683, 756, 1045
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 204, 250, 710, 1047
Bse8I	GATNNNNATC	2 cut(s)	630, 1023
BseBI	CCWGG	2 cut(s)	757, 1113
BseDI	CCNNGG	4 cut(s)	507, 683, 756, 1045
BseGI	GGATG	6 cut(s)	97, 220, 549, 631, 871, 1105
BseJI	GATNNNNATC	2 cut(s)	630, 1023
BseLI	CCNNNNNNNGG	5 cut(s)	111, 204, 250, 710, 1047
BseMII	CTCAG	1 cut(s)	546
BseRI	GAGGAG	2 cut(s)	467, 1010
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	120, 637, 677
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	849
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	3 cut(s)	392, 592, 815
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	26, 112
BslFI	GGGAC	3 cut(s)	59, 158, 911
BslI	CCNNNNNNNGG	5 cut(s)	111, 204, 250, 710, 1047
BsmAI	GTCTC	3 cut(s)	212, 602, 692
BsmFI	GGGAC	3 cut(s)	59, 158, 911
BsnI	GGCC	3 cut(s)	392, 592, 815
Bso31I	GGTCTC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	1102
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	7 cut(s)	54, 153, 334, 503, 735, 1042, 1063
BspANI	GGCC	3 cut(s)	392, 592, 815
BspCNI	CTCAG	1 cut(s)	545
BspFNI	CGCG	1 cut(s)	849
BspHI	TCATGA	2 cut(s)	403, 1027
BspLI	GGNNCC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	692
BssECI	CCNNGG	4 cut(s)	507, 683, 756, 1045
BssMI	GATC	1 cut(s)	1102
BssT1I	CCWWGG	2 cut(s)	507, 683
Bst2UI	CCWGG	2 cut(s)	757, 1113
Bst4CI	ACNGT	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	177, 426, 532
BstDSI	CCRYGG	1 cut(s)	1045
BstF5I	GGATG	6 cut(s)	97, 220, 549, 631, 871, 1105
BstFNI	CGCG	1 cut(s)	849
BstHHI	GCGC	2 cut(s)	243, 851
BstKTI	GATC	1 cut(s)	1105
BstMAI	GTCTC	3 cut(s)	212, 602, 692
BstMBI	GATC	1 cut(s)	1102
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	3 cut(s)	647, 656, 665
BstNI	CCWGG	2 cut(s)	757, 1113
BstNSI	RCATGY	4 cut(s)	262, 575, 904, 1059
BstSCI	CCNGG	3 cut(s)	24, 755, 1111
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	3 cut(s)	120, 637, 677
BstV2I	GAAGAC	1 cut(s)	876
BsuRI	GGCC	3 cut(s)	392, 592, 815
BtgI	CCRYGG	1 cut(s)	1045
BtsCI	GGATG	6 cut(s)	97, 220, 549, 631, 871, 1105
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	163, 351
Cac8I	GCNNGC	1 cut(s)	590
CciI	TCATGA	2 cut(s)	403, 1027
CfoI	GCGC	2 cut(s)	243, 851
Cfr13I	GGNCC	2 cut(s)	166, 619
CsiI	ACCWGGT	1 cut(s)	1111
Csp6I	GTAC	3 cut(s)	487, 986, 1078
CviAII	CATG	8 cut(s)	64, 259, 404, 572, 623, 901, 1028, 1056
CviQI	GTAC	3 cut(s)	487, 986, 1078
DdeI	CTNAG	3 cut(s)	177, 426, 532
DpnI	GATC	1 cut(s)	1104
DpnII	GATC	1 cut(s)	1102
DrdI	GACNNNNNNGTC	1 cut(s)	878
DseDI	GACNNNNNNGTC	1 cut(s)	878
EciI	GGCGGA	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	507, 683
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	2 cut(s)	166, 619
Eco88I	CYCGRG	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	1031
EcoRII	CCWGG	2 cut(s)	755, 1111
EcoT14I	CCWWGG	2 cut(s)	507, 683
ErhI	CCWWGG	2 cut(s)	507, 683
FaeI	CATG	8 cut(s)	67, 262, 407, 575, 626, 904, 1031, 1059
FaqI	GGGAC	3 cut(s)	59, 158, 911
FatI	CATG	8 cut(s)	63, 258, 403, 571, 622, 900, 1027, 1055
FauI	CCCGC	3 cut(s)	728, 1049, 1056
FauNDI	CATATG	1 cut(s)	730
Fnu4HI	GCNGC	5 cut(s)	55, 134, 154, 651, 666
FokI	GGATG	6 cut(s)	104, 227, 556, 618, 878, 1112
Fsp4HI	GCNGC	5 cut(s)	55, 134, 154, 651, 666
GlaI	GCGC	2 cut(s)	242, 850
GluI	GCNGC	5 cut(s)	55, 134, 154, 651, 666
HaeIII	GGCC	3 cut(s)	392, 592, 815
HapII	CCGG	2 cut(s)	26, 112
HhaI	GCGC	2 cut(s)	243, 851
Hin1II	CATG	8 cut(s)	67, 262, 407, 575, 626, 904, 1031, 1059
Hin6I	GCGC	2 cut(s)	241, 849
HinP1I	GCGC	2 cut(s)	241, 849
HinfI	GANTC	5 cut(s)	115, 220, 515, 721, 741
HpaII	CCGG	2 cut(s)	26, 112
HphI	GGTGA	5 cut(s)	14, 101, 116, 728, 773
Hpy166II	GTNNAC	2 cut(s)	351, 1053
Hpy188I	TCNGA	6 cut(s)	13, 84, 225, 535, 774, 884
Hpy188III	TCNNGA	7 cut(s)	385, 404, 605, 607, 890, 929, 1028
Hpy8I	GTNNAC	2 cut(s)	351, 1053
HpyAV	CCTTC	5 cut(s)	44, 382, 862, 929, 932
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	8 cut(s)	211, 351, 526, 569, 659, 665, 680, 1118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	647, 656, 665
HpyF3I	CTNAG	3 cut(s)	177, 426, 532
Hsp92II	CATG	8 cut(s)	67, 262, 407, 575, 626, 904, 1031, 1059
HspAI	GCGC	2 cut(s)	241, 849
Kzo9I	GATC	1 cut(s)	1102
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	3 cut(s)	120, 637, 677
LweI	GCATC	3 cut(s)	130, 646, 790
MabI	ACCWGGT	1 cut(s)	1111
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	1 cut(s)	1104
MboI	GATC	1 cut(s)	1102
MboII	GAAGA	5 cut(s)	560, 881, 1012, 1028, 1097
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	6 cut(s)	128, 688, 783, 876, 913, 1031
MlyI	GAGTC	2 cut(s)	214, 750
MmeI	TCCRAC	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	375, 807
MslI	CAYNNNNRTG	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	2 cut(s)	26, 112
MspR9I	CCNGG	3 cut(s)	26, 757, 1113
MunI	CAATTG	1 cut(s)	128
MvaI	CCWGG	2 cut(s)	757, 1113
MvnI	CGCG	1 cut(s)	849
MwoI	GCNNNNNNNGC	3 cut(s)	647, 656, 665
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	1 cut(s)	1102
NlaIII	CATG	8 cut(s)	67, 262, 407, 575, 626, 904, 1031, 1059
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	3 cut(s)	269, 401, 773
NspI	RCATGY	4 cut(s)	262, 575, 904, 1059
PaeR7I	CTCGAG	1 cut(s)	605
PagI	TCATGA	2 cut(s)	403, 1027
PciI	ACATGT	2 cut(s)	571, 1055
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	115, 515, 721
PkrI	GCNGC	5 cut(s)	56, 135, 155, 652, 667
PleI	GAGTC	2 cut(s)	214, 749
PpsI	GAGTC	2 cut(s)	214, 749
PscI	ACATGT	2 cut(s)	571, 1055
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	755, 1111
PspGI	CCWGG	2 cut(s)	755, 1111
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	166, 619
RsaI	GTAC	3 cut(s)	488, 987, 1079
RsaNI	GTAC	3 cut(s)	487, 986, 1078
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	375, 807
SatI	GCNGC	5 cut(s)	55, 134, 154, 651, 666
Sau3AI	GATC	1 cut(s)	1102
Sau96I	GGNCC	2 cut(s)	166, 619
SchI	GAGTC	2 cut(s)	214, 750
ScrFI	CCNGG	3 cut(s)	26, 757, 1113
SduI	GDGCHC	1 cut(s)	353
SexAI	ACCWGGT	1 cut(s)	1111
SfaNI	GCATC	3 cut(s)	130, 646, 790
Sfr274I	CTCGAG	1 cut(s)	605
SinI	GGWCC	2 cut(s)	166, 619
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	374, 605
SmoI	CTYRAG	2 cut(s)	374, 605
Sse9I	AATT	6 cut(s)	128, 688, 783, 876, 913, 1031
SsiI	CCGC	7 cut(s)	54, 153, 334, 503, 735, 1042, 1063
StyD4I	CCNGG	3 cut(s)	24, 755, 1111
StyI	CCWWGG	2 cut(s)	507, 683
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	4 cut(s)	330, 606, 1089, 1108
TasI	AATT	6 cut(s)	128, 688, 783, 876, 913, 1031
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	2 cut(s)	57, 156
TfiI	GAWTC	3 cut(s)	115, 515, 721
Tru1I	TTAA	2 cut(s)	375, 807
Tru9I	TTAA	2 cut(s)	375, 807
TscAI	CASTG	2 cut(s)	163, 358
TseI	GCWGC	3 cut(s)	133, 650, 665
TspDTI	ATGAA	3 cut(s)	882, 914, 1044
TspRI	CASTG	2 cut(s)	163, 358
Vha464I	CTTAAG	1 cut(s)	374
VneI	GTGCAC	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	166, 619
XapI	RAATTY	1 cut(s)	1031
XceI	RCATGY	4 cut(s)	262, 575, 904, 1059
XhoI	CTCGAG	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.