Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009151

Physical Location & Seq

Genomic Coordinates Forward (+)

55035885 .. 55036375

Gene Structure 491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG399700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCAAAGCGCCTCCTGCCAACCCTCAACCGTGTTCTTATAGAGAAAATAGTCCCACCCTCCAAAACCACCGCCGGCATTCTCTTACCGGAGTCATCCGCCAAGCTGAACTCGGGGAAGGTGGTTGCTGTTGGACCAGGAACTAAGGATAAGGCCGGAAATGCGATCCCAGTGGCTGTGAAAGAAGGTGACACTGTTCTGTTGCCCGAATATGGTGGCACCCAAGTTAAGCTTGGTGACAAGGAGTTCCATTTGTACCGGGATGAGGACATTTTGGGCACTCTCCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010033 GO:0031974 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

97

Amino Acids

10.32

Weight (kDa)

7.99

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	7 - 94	9e-25	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14980 AT1G14980 AT1G23100
fragaria_vesca	FvH4_4g32620
malus_domestica	MD09G1260100.v1.1 MD13G1024100.v1.1 MD16G1026800.v1.1
prunus_persica	Prupe.1G326400_v2.0.a1 Prupe.1G326400_v2.0.a1 Prupe.3G151700_v2.0.a1 Prupe.7G030600_v2.0.a1
pyrus_communis	pycom09g17470 pycom16g02260
rosa_chinensis	RchiOBHm_Chr4g0441491
rosa_multiflora	Rmu_sc0000353.1_g000043
rosa_roxburghii	Rroxscaffold_5G00382350
rosa_rugosa	Rorug04G0334200
rosa_samantha	Rh4AG385600 Rh4BG399700 Rh4CG414700 Rh4DG392400
rosa_wichuraiana	Rw4G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	2 cut(s)	72, 99
AclWI	GGATC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	212, 265
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	106, 232
AluI	AGCT	2 cut(s)	106, 232
AlwI	GGATC	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	200, 248
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	138, 260
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	138, 260
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 265
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	95, 268
BseLI	CCNNNNNNNGG	2 cut(s)	212, 265
BseNI	ACTGG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	281
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	4 cut(s)	75, 89, 156, 259
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	212, 265
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	72, 99
BspANI	GGCC	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	32, 196
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	95, 268
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 161
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	136, 258
BstSLI	GKGCMC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	95, 268
BtsIMutI	CAGTG	2 cut(s)	177, 192
Cac8I	GCNNGC	1 cut(s)	76
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	4 cut(s)	106, 155, 176, 232
CviKI_1	RGCY	4 cut(s)	106, 155, 176, 232
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	290
FaiI	YATR	3 cut(s)	41, 213, 288
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	286
FokI	GGATG	2 cut(s)	82, 275
GlaI	GCGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	4 cut(s)	75, 89, 156, 259
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	4 cut(s)	75, 89, 156, 259
HphI	GGTGA	2 cut(s)	200, 248
HpyAV	CCTTC	2 cut(s)	112, 179
HpyCH4III	ACNGT	2 cut(s)	32, 196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 161
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	10
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	165
LpnPI	CCDG	8 cut(s)	29, 88, 102, 123, 150, 169, 183, 272
MaeIII	GTNAC	2 cut(s)	188, 236
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	23, 35, 70, 259
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	228
MspI	CCGG	4 cut(s)	75, 89, 156, 259
MspR9I	CCNGG	2 cut(s)	138, 260
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	16, 161
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	165
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	188, 236
PctI	GAATGC	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	138, 260
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	4 cut(s)	108, 123, 190, 234
SinI	GGWCC	1 cut(s)	134
SsiI	CCGC	2 cut(s)	72, 99
StyD4I	CCNGG	2 cut(s)	136, 258
TaaI	ACNGT	2 cut(s)	32, 196
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	177, 199
TseFI	GTSAC	2 cut(s)	188, 236
Tsp45I	GTSAC	2 cut(s)	188, 236
TspRI	CASTG	2 cut(s)	177, 199
VpaK11BI	GGWCC	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.