AT1G23100

Belongs to the GroES chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009151
Physical Location & Seq
Forward (+)
8195776 .. 8196475
700 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23100.1

Sequence Viewer

Length: 294 bp
ATGGCGAAGCGTTTGATCCCGACTCTCAACCGTGTATTGGTGGAGAAGATTCTCCCACCGTCAAAGACCGTCTCCGGCATTCTCCTACCGGAGAAATCATCTCAGTTGAATTCCGGGAGAGTTATAGCAGTTGGTCCTGGAGCTAGAGACAGAGCAGGGAATCTAATTCCGGTTTCGGTTAAGGAAGGAGACAATGTTCTTTTGCCTGAATTTGGCGGTACTCAAGTTAAGCTTGGAGAGAAAGAGTTCCTATTGTATAGGGATGAAGATATCATGGCTACACTTCACGAGTGA

Protein Analysis

97

Amino Acids

10.55

Weight (kDa)

8.06

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn10 PF00166 5 - 94 9.4e-25 Chaperonin 10 Kd subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 10
AcsI RAATTY 2 cut(s) 109, 209
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 37, 212
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 136
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 2 cut(s) 143, 232
AluI AGCT 2 cut(s) 143, 232
Alw26I GTCTC 3 cut(s) 76, 141, 183
AlwI GGATC 1 cut(s) 10
ApoI RAATTY 2 cut(s) 109, 209
Asp700I GAANNNNTTC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 115
AvaII GGWCC 1 cut(s) 134
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BauI CACGAG 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 76, 141, 183
BfaI CTAG 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 115, 138
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 2 cut(s) 115, 138
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 115
BsaWI WCCGGW 2 cut(s) 88, 169
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 212
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 37, 212
BseMII CTCAG 1 cut(s) 116
BsiSI CCGG 4 cut(s) 75, 89, 114, 170
BslI CCNNNNNNNGG 2 cut(s) 37, 212
BsmAI GTCTC 3 cut(s) 76, 141, 183
BsmBI CGTCTC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 10
BssMI GATC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 32, 60, 70
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 3 cut(s) 76, 141, 183
BstMBI GATC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 113, 136
BtsCI GGATG 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 274
CviJI RGCY 3 cut(s) 143, 232, 278
CviKI_1 RGCY 3 cut(s) 143, 232, 278
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 277
FaiI YATR 3 cut(s) 125, 258, 275
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 1 cut(s) 273
FokI GGATG 1 cut(s) 275
FspBI CTAG 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 159
HapII CCGG 4 cut(s) 75, 89, 114, 170
Hin1II CATG 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 3 cut(s) 22, 49, 160
HpaII CCGG 4 cut(s) 75, 89, 114, 170
Hpy188III TCNNGA 2 cut(s) 19, 287
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 32, 60, 70
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 8 cut(s) 88, 102, 123, 127, 141, 150, 183, 219
MaeI CTAG 1 cut(s) 144
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 58, 278
MluCI AATT 3 cut(s) 109, 165, 209
MlyI GAGTC 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 180, 228
MspI CCGG 4 cut(s) 75, 89, 114, 170
MspR9I CCNGG 2 cut(s) 115, 138
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 1 cut(s) 138
NciI CCSGG 1 cut(s) 115
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 277
PctI GAATGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 49, 160
PfoI TCCNGGA 2 cut(s) 113, 136
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 134
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 180, 228
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 115, 138
SetI ASST 2 cut(s) 145, 234
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 3 cut(s) 109, 165, 209
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 113, 136
TaaI ACNGT 3 cut(s) 32, 60, 70
TasI AATT 3 cut(s) 109, 165, 209
TfiI GAWTC 2 cut(s) 49, 160
Tru1I TTAA 2 cut(s) 180, 228
Tru9I TTAA 2 cut(s) 180, 228
TspDTI ATGAA 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 2 cut(s) 109, 209
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.