Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Forward (+)

5198940 .. 5202315

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAACCCAATGGGTACAGGAAAGAAAGAAGAAAGGAACAACATTTGGGGAGAATGAATGGTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATTTGGGCTAGTGGAGCTCTTGATCCTGACAGCACTACATCTGATGATCTTGTCACTTCTGTCAAAAGGGGAGTGTGGGCTATGATCGCTGTCTTTCTTGCTTACTCTTTGCTCCAGGCCCCTTCAACGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAGAGACGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAGAACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTATGACACAGTATTTGATGAGTTTTTCTTGGCTCACATCTTTGGTTGGTGGGGGAAAGCAATTCTGATCCGGAACCAGCCGCTTCTTTGGGTGCTTTCAATTGGTTTTGAGTTATTGGAGGTTACTTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGTATTGTTCTTGATATCTTGATATGCAACTGGTTTGGTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAAGTGAAAAGGACACTGGGGCAGTTCACACCAGCTCACTGGGACAAAGACGAGTGGCATCCGCTGCAGGGACCTTGGCGTTTTATTCAAGTACTCACTCTTTGCATCATATTCTTGACAGTGGAGCTGAACACATTCTTTCTCAAGTTTAGCCTGTGGATCCCCCCTCGAAACCCAGTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGGGAGTACAATTCATATCTTCAAGACAGAAAACCTGTGAAAAAGGTGGGAGCATTCTGTTGGCTGTCACTGGGGATATGCATAGTAGAACTTCTCATCTGCATCAAGTTTGGAAGTGGATTGTACCCAACAGAAATGCCATTGTGGGTAGTGACACTATGGGGAAGTGTGGGACTTGGACTTGTGGCCTTCTTGCTGTCTTGGACATGGAAGATCCAGAAGATCCTCGCGCAAAAGAGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

425

Amino Acids

49.52

Weight (kDa)

9.08

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	101 - 382	6.2e-113	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	1 cut(s)	1262
AccIII	TCCGGA	1 cut(s)	579
AciI	CCGC	3 cut(s)	590, 784, 866
AclWI	GGATC	7 cut(s)	86, 176, 571, 958, 971, 1240, 1249
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	655
AfaI	GTAC	4 cut(s)	17, 897, 1040, 1157
AfiI	CCNNNNNNNGG	3 cut(s)	286, 425, 872
AgsI	TTSAA	5 cut(s)	285, 609, 661, 893, 1055
AjiI	CACGTC	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	3 cut(s)	176, 839, 931
AluI	AGCT	3 cut(s)	176, 839, 931
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	3 cut(s)	74, 373, 1264
AlwI	GGATC	7 cut(s)	86, 176, 571, 958, 971, 1240, 1249
Aor13HI	TCCGGA	1 cut(s)	579
AoxI	GGCC	4 cut(s)	276, 299, 336, 1218
ApeKI	GCWGC	1 cut(s)	868
ApoI	RAATTY	1 cut(s)	655
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	3 cut(s)	149, 321, 1264
AspS9I	GGNCC	3 cut(s)	277, 300, 875
AsuHPI	GGTGA	2 cut(s)	83, 476
AvaII	GGWCC	1 cut(s)	875
BamHI	GGATCC	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	855
BccI	CCATC	2 cut(s)	312, 746
BceAI	ACGGC	3 cut(s)	323, 410, 450
BciT130I	CCWGG	1 cut(s)	275
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	74, 373, 1264
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	869, 991
BfoI	RGCGCY	2 cut(s)	150, 322
BisI	GCNGC	3 cut(s)	590, 784, 869
BlsI	GCNGC	3 cut(s)	591, 785, 870
BmcAI	AGTACT	1 cut(s)	897
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	875
BmgBI	CACGTC	1 cut(s)	383
BmgT120I	GGNCC	3 cut(s)	277, 300, 875
BmiI	GGNNCC	6 cut(s)	6, 279, 302, 584, 876, 965
BmrFI	CCNGG	1 cut(s)	275
BmrI	ACTGGG	4 cut(s)	830, 853, 974, 1112
BmsI	GCATC	4 cut(s)	379, 871, 918, 1143
BmuI	ACTGGG	4 cut(s)	830, 853, 974, 1112
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	95, 424, 878
BsaWI	WCCGGW	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 425, 872
Bse1I	ACTGG	5 cut(s)	713, 825, 848, 980, 1107
Bse8I	GATNNNNATC	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	95, 424, 878
BseGI	GGATG	2 cut(s)	304, 862
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	286, 425, 872
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	5 cut(s)	713, 825, 848, 980, 1107
BseXI	GCAGC	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	1262
BshFI	GGCC	4 cut(s)	278, 301, 338, 1220
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	580
BslFI	GGGAC	4 cut(s)	689, 860, 888, 1218
BslI	CCNNNNNNNGG	3 cut(s)	286, 425, 872
BsmAI	GTCTC	3 cut(s)	74, 373, 1264
BsmBI	CGTCTC	2 cut(s)	373, 1264
BsmFI	GGGAC	4 cut(s)	689, 860, 888, 1218
BsmI	GAATGC	1 cut(s)	1085
BsnI	GGCC	4 cut(s)	278, 301, 338, 1220
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp13I	TCCGGA	1 cut(s)	579
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	3 cut(s)	590, 784, 866
BspANI	GGCC	4 cut(s)	278, 301, 338, 1220
BspCNI	CTCAG	1 cut(s)	433
BspEI	TCCGGA	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	1262
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	6 cut(s)	6, 279, 302, 584, 876, 965
BspMAI	CTGCAG	1 cut(s)	873
BspPI	GGATC	7 cut(s)	86, 176, 571, 958, 971, 1240, 1249
BsrI	ACTGG	5 cut(s)	713, 825, 848, 980, 1107
BssECI	CCNNGG	3 cut(s)	95, 424, 878
BssNAI	GTATAC	1 cut(s)	735
BssT1I	CCWWGG	3 cut(s)	95, 424, 878
Bst1107I	GTATAC	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	6 cut(s)	289, 455, 520, 680, 739, 925
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	868
BstC8I	GCNNGC	1 cut(s)	788
BstDEI	CTNAG	3 cut(s)	322, 349, 441
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	304, 862
BstFNI	CGCG	1 cut(s)	1262
BstH2I	RGCGCY	2 cut(s)	150, 322
BstHHI	GCGC	3 cut(s)	149, 321, 1264
BstMAI	GTCTC	3 cut(s)	74, 373, 1264
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 245, 783, 868
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	869, 991
BstUI	CGCG	1 cut(s)	1262
BstV1I	GCAGC	1 cut(s)	855
BstX2I	RGATCY	3 cut(s)	963, 1245, 1254
BstXI	CCANNNNNNTGG	1 cut(s)	843
BstYI	RGATCY	3 cut(s)	963, 1245, 1254
BstZ17I	GTATAC	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	278, 301, 338, 1220
BtgI	CCRYGG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	304, 862
BtsIMutI	CAGTG	5 cut(s)	818, 841, 930, 987, 1100
Cac8I	GCNNGC	1 cut(s)	788
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	3 cut(s)	149, 321, 1264
Cfr13I	GGNCC	3 cut(s)	277, 300, 875
Csp6I	GTAC	4 cut(s)	16, 896, 1039, 1156
CviAII	CATG	5 cut(s)	96, 105, 329, 403, 1239
CviQI	GTAC	4 cut(s)	16, 896, 1039, 1156
DdeI	CTNAG	3 cut(s)	322, 349, 441
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	3 cut(s)	95, 424, 878
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	875
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoO109I	RGGNCCY	3 cut(s)	277, 300, 875
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	3 cut(s)	95, 424, 878
EcoT22I	ATGCAT	1 cut(s)	1115
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	3 cut(s)	95, 424, 878
Esp3I	CGTCTC	2 cut(s)	373, 1264
FaeI	CATG	5 cut(s)	99, 108, 332, 406, 1242
FaqI	GGGAC	4 cut(s)	689, 860, 888, 1218
FatI	CATG	5 cut(s)	95, 104, 328, 402, 1238
FauNDI	CATATG	2 cut(s)	645, 763
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	3 cut(s)	590, 784, 869
FokI	GGATG	2 cut(s)	291, 849
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	3 cut(s)	590, 784, 869
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	3 cut(s)	148, 320, 1263
GluI	GCNGC	3 cut(s)	590, 784, 869
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	2 cut(s)	150, 322
HaeIII	GGCC	4 cut(s)	278, 301, 338, 1220
HapII	CCGG	1 cut(s)	580
HhaI	GCGC	3 cut(s)	149, 321, 1264
Hin1II	CATG	5 cut(s)	99, 108, 332, 406, 1242
Hin6I	GCGC	3 cut(s)	147, 319, 1262
HinP1I	GCGC	3 cut(s)	147, 319, 1262
HinfI	GANTC	2 cut(s)	505, 985
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	2 cut(s)	83, 476
Hpy166II	GTNNAC	2 cut(s)	735, 831
Hpy188I	TCNGA	3 cut(s)	202, 378, 576
Hpy8I	GTNNAC	2 cut(s)	735, 831
HpyAV	CCTTC	2 cut(s)	291, 1231
HpyCH4III	ACNGT	6 cut(s)	289, 455, 520, 680, 739, 925
HpyCH4IV	ACGT	2 cut(s)	382, 1273
HpyCH4V	TGCA	9 cut(s)	104, 311, 356, 392, 705, 871, 909, 1113, 1134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 245, 783, 868
HpyF3I	CTNAG	3 cut(s)	322, 349, 441
HpySE526I	ACGT	2 cut(s)	382, 1273
Hsp92II	CATG	5 cut(s)	99, 108, 332, 406, 1242
HspAI	GCGC	3 cut(s)	147, 319, 1262
Kpn2I	TCCGGA	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	481
LmnI	GCTCC	4 cut(s)	173, 276, 928, 1082
Lsp1109I	GCAGC	1 cut(s)	855
LweI	GCATC	4 cut(s)	379, 871, 918, 1143
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	382, 1273
MaeIII	GTNAC	5 cut(s)	211, 631, 648, 1098, 1183
MboII	GAAGA	5 cut(s)	42, 125, 1043, 1255, 1264
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	3 cut(s)	963, 1245, 1254
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	4 cut(s)	570, 609, 655, 1042
MnlI	CCTC	4 cut(s)	129, 622, 981, 1268
Mph1103I	ATGCAT	1 cut(s)	1115
MroI	TCCGGA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	938
MseI	TTAA	2 cut(s)	501, 1276
MslI	CAYNNNNRTG	1 cut(s)	766
MspA1I	CMGCKG	1 cut(s)	868
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	1085
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	1262
MwoI	GCNNNNNNNGC	4 cut(s)	173, 245, 783, 868
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	2 cut(s)	645, 763
NlaIII	CATG	5 cut(s)	99, 108, 332, 406, 1242
NlaIV	GGNNCC	6 cut(s)	6, 279, 302, 584, 876, 965
NmuCI	GTSAC	3 cut(s)	211, 1098, 1183
NsiI	ATGCAT	1 cut(s)	1115
PagI	TCATGA	1 cut(s)	402
PctI	GAATGC	1 cut(s)	1085
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	2 cut(s)	505, 985
PkrI	GCNGC	3 cut(s)	591, 785, 870
PpuMI	RGGWCCY	1 cut(s)	875
Psp124BI	GAGCTC	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	875
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	6 cut(s)	6, 279, 302, 584, 876, 965
PspPI	GGNCC	3 cut(s)	277, 300, 875
PspPPI	RGGWCCY	1 cut(s)	875
PstI	CTGCAG	1 cut(s)	873
PsuI	RGATCY	3 cut(s)	963, 1245, 1254
RsaI	GTAC	4 cut(s)	17, 897, 1040, 1157
RsaNI	GTAC	4 cut(s)	16, 896, 1039, 1156
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	501, 1276
SatI	GCNGC	3 cut(s)	590, 784, 869
Sau96I	GGNCC	3 cut(s)	277, 300, 875
ScaI	AGTACT	1 cut(s)	897
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	4 cut(s)	379, 871, 918, 1143
SfcI	CTRYAG	2 cut(s)	869, 991
SinI	GGWCC	1 cut(s)	875
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	4 cut(s)	570, 609, 655, 1042
SsiI	CCGC	3 cut(s)	590, 784, 866
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	3 cut(s)	95, 424, 878
TaaI	ACNGT	6 cut(s)	289, 455, 520, 680, 739, 925
TaiI	ACGT	2 cut(s)	385, 1276
TaqI	TCGA	2 cut(s)	742, 973
TasI	AATT	4 cut(s)	570, 609, 655, 1042
TatI	WGTACW	2 cut(s)	895, 1038
TauI	GCSGC	2 cut(s)	592, 786
TfiI	GAWTC	2 cut(s)	505, 985
Tru1I	TTAA	2 cut(s)	501, 1276
Tru9I	TTAA	2 cut(s)	501, 1276
TscAI	CASTG	5 cut(s)	825, 848, 930, 987, 1107
TseFI	GTSAC	3 cut(s)	211, 1098, 1183
TseI	GCWGC	1 cut(s)	868
Tsp45I	GTSAC	3 cut(s)	211, 1098, 1183
TspDTI	ATGAA	5 cut(s)	71, 317, 391, 419, 1035
TspRI	CASTG	5 cut(s)	825, 848, 930, 987, 1107
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	2 cut(s)	102, 422
XmiI	GTMKAC	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	897
Zsp2I	ATGCAT	1 cut(s)	1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.