Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Reverse (-)

2491021 .. 2497554

Gene Structure 6534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1035000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAGCCTAATGGTCATAGGAGAGTAAGGAGAAAGGATGTCCTAGAAAATGGTGACATGAGTCAGTCAAATTCAGGTGATGAGCTGGATCCATGGACTGCATGGGCTTACAAACCTCGGACCATTTCAATGTTGCTTATTGGCGCATGCTTCCTTATTTGGGTAAGTGGATCCCTAGACCCAGAAAGCAGTGCATCTGGAGATGTTGTTACATCTGTAAAAAGGGGTATATGGGCGATGATTGCAGTTTTTCTTGCTTATTGCTTGCTGCAAGCCCCATCTACGGTGCTTATCAGACCACATCCAGCAATTTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTGTTTCTCTCACATTTTTGCTTTTCCAGAAGCGTGATGATGCTCGGCAGTTTATGAAGTTTCTCCATCCAGATCTTGGTGTTGAACTTCCAGAAAAATCTTATGGTGCCGATTGTCGCATATATTTGCCTGAAAATCCTACTAGCAGGTTTAAGAATGTTTATGAAACTCTTTTTGATGAATTTGTTGTGGCTCATATAGTTGGATGGTGGGGAAAGGCTATATTGATCCGTAATCAGCCCCTTCTGTGGGTGCTTTCAATCGGATTTGAGTTGATGGAGTTTACCTTCCGCCATATGTTACCAAACTTCAATGAATGCTGGTGGGATAGTATCATTCTTGACATTTTGATCTGCAACTGGTTTGGTATCTGGGCAGGAATGCATACGGTCAGGTACTTTGATGGAAAAACATACAAGTGGGTTGGTCTGAGCCGTCAGCCAAATATTATTGGAAAAGTCAAACGAACACTGGGGCAGTTTACACCGGCTCAGTGGGACAAGGACGAGTGGCATCCCTTGCTAGATCCATGGCGTTTCATTCAAGTCCTCACTCTTTGCATTATATTCATGACTGTAGAGCTTAATACATTCTTTCTTAAGTTCTGTCTATGGATTCCTCCCCGGAACCCCTTGATCGTTTATAGGTTAATCCTGTGGTGGCTAATTGCAATTCCGACAATTCGCGAGTACAATTCATACCTTCAAGATCGTAAACCAGTGAAGAAAGTAGGGGCATTTTGTTGGCTTTCTGTCGCTATTTGCATTATTGAACTTCTCATTTGCATCAAGTTTGGACATGGATTATATCCTAAACCAATGCCATTATGGCTGGTAACGTTTTGGGCATCCGCCGGAGCGGCCCTCGTGATTTTTTTGATAATCTGGTCATGGCAACTGCATCAAAGTTTACGGCGAAAGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

425

Amino Acids

49.57

Weight (kDa)

9.16

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	100 - 381	1.1e-113	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	1205
AccII	CGCG	1 cut(s)	1032
AciI	CCGC	3 cut(s)	637, 1197, 1205
AclI	AACGTT	1 cut(s)	1184
AclWI	GGATC	6 cut(s)	83, 96, 165, 178, 568, 866
AcsI	RAATTY	2 cut(s)	70, 527
AfaI	GTAC	2 cut(s)	743, 1037
AfiI	CCNNNNNNNGG	5 cut(s)	160, 283, 422, 594, 595
AflII	CTTAAG	1 cut(s)	944
AgsI	TTSAA	7 cut(s)	129, 431, 606, 658, 890, 1052, 1118
AluBI	AGCT	2 cut(s)	85, 928
AluI	AGCT	2 cut(s)	85, 928
AlwI	GGATC	6 cut(s)	83, 96, 165, 178, 568, 866
AoxI	GGCC	1 cut(s)	1206
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	70, 527
AspLEI	GCGC	2 cut(s)	146, 318
AspS9I	GGNCC	2 cut(s)	120, 1207
AsuC2I	CCSGG	1 cut(s)	970
AsuHPI	GGTGA	2 cut(s)	65, 89
AvaII	GGWCC	1 cut(s)	120
BamHI	GGATCC	2 cut(s)	88, 170
BanI	GGYRCC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	1211
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	5 cut(s)	286, 420, 546, 616, 743
BceAI	ACGGC	1 cut(s)	765
BcnI	CCSGG	1 cut(s)	970
BfaI	CTAG	4 cut(s)	44, 176, 489, 869
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	319
BfrI	CTTAAG	1 cut(s)	944
BfuAI	ACCTGC	1 cut(s)	483
BglI	GCCNNNNNGGC	2 cut(s)	1174, 1205
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	269, 1206
BlsI	GCNGC	2 cut(s)	270, 1207
Bme1390I	CCNGG	1 cut(s)	970
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	120, 1207
BmiI	GGNNCC	5 cut(s)	6, 90, 172, 454, 974
BmrFI	CCNGG	1 cut(s)	970
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	6 cut(s)	203, 376, 868, 1140, 1202, 1255
BmuI	ACTGGG	1 cut(s)	827
BoxI	GACNNNNGTC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	1194, 1226
BpmI	CTGGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	970
BsaJI	CCNNGG	4 cut(s)	92, 116, 875, 968
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 283, 422, 594, 595
Bse118I	RCCGGY	1 cut(s)	832
Bse1I	ACTGG	3 cut(s)	710, 822, 1064
BseDI	CCNNGG	4 cut(s)	92, 116, 875, 968
BseGI	GGATG	6 cut(s)	43, 301, 412, 557, 859, 1193
BseLI	CCNNNNNNNGG	5 cut(s)	160, 283, 422, 594, 595
BseMII	CTCAG	2 cut(s)	767, 851
BseNI	ACTGG	3 cut(s)	710, 822, 1064
BseXI	GCAGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	1032
BshFI	GGCC	1 cut(s)	1208
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	3 cut(s)	833, 970, 1200
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	5 cut(s)	160, 283, 422, 594, 595
BsmFI	GGGAC	1 cut(s)	857
BsmI	GAATGC	2 cut(s)	668, 732
BsnI	GGCC	1 cut(s)	1208
Bsp143I	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
Bsp19I	CCATGG	2 cut(s)	92, 875
Bsp68I	TCGCGA	1 cut(s)	1032
BspACI	CCGC	3 cut(s)	637, 1197, 1205
BspANI	GGCC	1 cut(s)	1208
BspCNI	CTCAG	2 cut(s)	768, 850
BspFNI	CGCG	1 cut(s)	1032
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	5 cut(s)	6, 90, 172, 454, 974
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	6 cut(s)	83, 96, 165, 178, 568, 866
BspT107I	GGYRCC	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	944
BsrBI	CCGCTC	1 cut(s)	1205
BsrFI	RCCGGY	1 cut(s)	832
BsrI	ACTGG	3 cut(s)	710, 822, 1064
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	4 cut(s)	92, 116, 875, 968
BssMI	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
BssSI	CACGAG	1 cut(s)	1211
BssT1I	CCWWGG	2 cut(s)	92, 875
Bst2BI	CACGAG	1 cut(s)	1211
Bst4CI	ACNGT	3 cut(s)	286, 736, 922
BstAFI	CTTAAG	1 cut(s)	944
BstAPI	GCANNNNNTGC	1 cut(s)	865
BstC8I	GCNNGC	3 cut(s)	148, 266, 273
BstDEI	CTNAG	2 cut(s)	776, 837
BstDSI	CCRYGG	2 cut(s)	92, 875
BstF5I	GGATG	6 cut(s)	43, 301, 412, 557, 859, 1193
BstFNI	CGCG	1 cut(s)	1032
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	2 cut(s)	146, 318
BstKTI	GATC	8 cut(s)	91, 173, 421, 576, 699, 874, 984, 1057
BstMBI	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 865, 1174, 1205, 1267
BstNSI	RCATGY	1 cut(s)	150
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	968
BstSFI	CTRYAG	1 cut(s)	921
BstUI	CGCG	1 cut(s)	1032
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	4 cut(s)	88, 170, 418, 871
BstXI	CCANNNNNNTGG	1 cut(s)	312
BstYI	RGATCY	4 cut(s)	88, 170, 418, 871
BsuRI	GGCC	1 cut(s)	1208
BtgI	CCRYGG	2 cut(s)	92, 875
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	6 cut(s)	43, 301, 412, 557, 859, 1193
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	4 cut(s)	196, 815, 845, 1071
BtuMI	TCGCGA	1 cut(s)	1032
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	3 cut(s)	148, 266, 273
CciI	TCATGA	1 cut(s)	915
CfoI	GCGC	2 cut(s)	146, 318
Cfr10I	RCCGGY	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	120, 1207
Csp6I	GTAC	2 cut(s)	742, 1036
CviAII	CATG	9 cut(s)	58, 93, 102, 147, 326, 876, 916, 1145, 1236
CviQI	GTAC	2 cut(s)	742, 1036
DdeI	CTNAG	2 cut(s)	776, 837
DpnI	GATC	8 cut(s)	90, 172, 420, 575, 698, 873, 983, 1056
DpnII	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
EciI	GGCGGA	2 cut(s)	626, 1186
Eco130I	CCWWGG	2 cut(s)	92, 875
Eco47I	GGWCC	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	92, 875
EcoT22I	ATGCAT	1 cut(s)	732
ErhI	CCWWGG	2 cut(s)	92, 875
FaeI	CATG	9 cut(s)	61, 96, 105, 150, 329, 879, 919, 1148, 1239
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	9 cut(s)	57, 92, 101, 146, 325, 875, 915, 1144, 1235
FauNDI	CATATG	1 cut(s)	642
Fnu4HI	GCNGC	2 cut(s)	269, 1206
FokI	GGATG	6 cut(s)	50, 288, 399, 564, 846, 1180
Fsp4HI	GCNGC	2 cut(s)	269, 1206
FspBI	CTAG	4 cut(s)	44, 176, 489, 869
GlaI	GCGC	2 cut(s)	145, 317
GluI	GCNGC	2 cut(s)	269, 1206
GsuI	CTGGAG	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	1208
HapII	CCGG	3 cut(s)	833, 970, 1200
HhaI	GCGC	2 cut(s)	146, 318
Hin1II	CATG	9 cut(s)	61, 96, 105, 150, 329, 879, 919, 1148, 1239
Hin6I	GCGC	2 cut(s)	144, 316
HinP1I	GCGC	2 cut(s)	144, 316
HinfI	GANTC	2 cut(s)	61, 961
HpaII	CCGG	3 cut(s)	833, 970, 1200
HphI	GGTGA	2 cut(s)	65, 89
Hpy166II	GTNNAC	5 cut(s)	343, 630, 828, 1061, 1256
Hpy188I	TCNGA	5 cut(s)	120, 296, 611, 777, 1023
Hpy188III	TCNNGA	9 cut(s)	198, 373, 416, 437, 686, 916, 1031, 1052, 1213
Hpy8I	GTNNAC	5 cut(s)	343, 630, 828, 1061, 1256
HpyAV	CCTTC	3 cut(s)	599, 643, 1058
HpyCH4III	ACNGT	3 cut(s)	286, 736, 922
HpyCH4IV	ACGT	1 cut(s)	1184
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 865, 1174, 1205, 1267
HpyF3I	CTNAG	2 cut(s)	776, 837
HpySE526I	ACGT	1 cut(s)	1184
Hsp92II	CATG	9 cut(s)	61, 96, 105, 150, 329, 879, 919, 1148, 1239
HspAI	GCGC	2 cut(s)	144, 316
Kzo9I	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
LmnI	GCTCC	2 cut(s)	4, 1202
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	6 cut(s)	203, 376, 868, 1140, 1202, 1255
MaeI	CTAG	4 cut(s)	44, 176, 489, 869
MaeII	ACGT	1 cut(s)	1184
MaeIII	GTNAC	4 cut(s)	53, 208, 645, 1180
MalI	GATC	8 cut(s)	90, 172, 420, 575, 698, 873, 983, 1056
MbiI	CCGCTC	1 cut(s)	1205
MboI	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
MboII	GAAGA	1 cut(s)	1081
MflI	RGATCY	4 cut(s)	88, 170, 418, 871
MluCI	AATT	7 cut(s)	70, 309, 527, 1011, 1017, 1026, 1039
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	529, 1046
MnlI	CCTC	5 cut(s)	126, 905, 975, 1220, 1260
Mph1103I	ATGCAT	1 cut(s)	732
MseI	TTAA	4 cut(s)	498, 930, 945, 995
MslI	CAYNNNNRTG	2 cut(s)	128, 763
MspCI	CTTAAG	1 cut(s)	944
MspI	CCGG	3 cut(s)	833, 970, 1200
MspR9I	CCNGG	1 cut(s)	970
Mva1269I	GAATGC	2 cut(s)	668, 732
MvnI	CGCG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	5 cut(s)	242, 865, 1174, 1205, 1267
NciI	CCSGG	1 cut(s)	970
NcoI	CCATGG	2 cut(s)	92, 875
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
NlaIII	CATG	9 cut(s)	61, 96, 105, 150, 329, 879, 919, 1148, 1239
NlaIV	GGNNCC	5 cut(s)	6, 90, 172, 454, 974
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	53
NruI	TCGCGA	1 cut(s)	1032
NsiI	ATGCAT	1 cut(s)	732
NspI	RCATGY	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	150
PagI	TCATGA	1 cut(s)	915
PctI	GAATGC	2 cut(s)	668, 732
PfeI	GAWTC	1 cut(s)	961
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	270, 1207
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PshAI	GACNNNNGTC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	1184
PspN4I	GGNNCC	5 cut(s)	6, 90, 172, 454, 974
PspPI	GGNCC	2 cut(s)	120, 1207
PsuI	RGATCY	4 cut(s)	88, 170, 418, 871
RruI	TCGCGA	1 cut(s)	1032
RsaI	GTAC	2 cut(s)	743, 1037
RsaNI	GTAC	2 cut(s)	742, 1036
RseI	CAYNNNNRTG	2 cut(s)	128, 763
SaqAI	TTAA	4 cut(s)	498, 930, 945, 995
SatI	GCNGC	2 cut(s)	269, 1206
Sau3AI	GATC	8 cut(s)	88, 170, 418, 573, 696, 871, 981, 1054
Sau96I	GGNCC	2 cut(s)	120, 1207
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	970
SfaNI	GCATC	6 cut(s)	203, 376, 868, 1140, 1202, 1255
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	128, 763
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	7 cut(s)	70, 309, 527, 1011, 1017, 1026, 1039
SsiI	CCGC	3 cut(s)	637, 1197, 1205
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	4 cut(s)	44, 176, 489, 869
StyD4I	CCNGG	1 cut(s)	968
StyI	CCWWGG	2 cut(s)	92, 875
TaaI	ACNGT	3 cut(s)	286, 736, 922
TaiI	ACGT	1 cut(s)	1187
TasI	AATT	7 cut(s)	70, 309, 527, 1011, 1017, 1026, 1039
TatI	WGTACW	1 cut(s)	1035
TauI	GCSGC	1 cut(s)	1208
TfiI	GAWTC	1 cut(s)	961
Tru1I	TTAA	4 cut(s)	498, 930, 945, 995
Tru9I	TTAA	4 cut(s)	498, 930, 945, 995
TscAI	CASTG	4 cut(s)	196, 822, 845, 1071
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	8 cut(s)	314, 416, 525, 540, 675, 874, 904, 1032
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	4 cut(s)	196, 822, 845, 1071
Van91I	CCANNNNNTGG	1 cut(s)	422
Vha464I	CTTAAG	1 cut(s)	944
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	2 cut(s)	70, 527
XceI	RCATGY	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	3 cut(s)	99, 419, 1170
XspI	CTAG	4 cut(s)	44, 176, 489, 869
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.