Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Reverse (-)

44565073 .. 44565555

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGCGTGTTCACTTATGAAACCGAGTTCACCTCTGTCATCCCACCACCAAGACTCTACAAGGCCTTTGTCCTTGATGCTGATAACCTCATCCCCAAGATTGCACCACAGGCTGTGAAGAGTGCTGAAATCGTTCAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATTCACCTCGGTGAAGGAAGCGAATACAGCTATGTCAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTGTACAACTACAGTATAATTGAAGGTGATGCTATCAGAGACAAAGTTGAGAAAATCTCTTACGAGATTAAGTTGGTGGCATCTCCAAGTGGAGGCTCCATCATCAAGAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAGATCAAGGAAGAGCACGTCAAGGCCGGAAAAGAAAGAGCCGCTGGTTTGTTCAAGATCATTGAGAACCACTTTTTGGCCAACCCTGAGGCCTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

160

Amino Acids

17.69

Weight (kDa)

5.87

Isoelectric Point (pI)

22.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 155	5.1e-22	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	457
AciI	CCGC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	459
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	332, 457
AgsI	TTSAA	3 cut(s)	137, 263, 436
AjiI	CACGTC	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw21I	GWGCWC	2 cut(s)	353, 399
Alw26I	GTCTC	1 cut(s)	273
AoxI	GGCC	4 cut(s)	63, 405, 459, 471
Asp700I	GAANNNNTTC	1 cut(s)	132
AsuHPI	GGTGA	6 cut(s)	22, 152, 164, 191, 278, 386
AxyI	CCTNAGG	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	461
Bbv12I	GWGCWC	2 cut(s)	353, 399
BccI	CCATC	4 cut(s)	137, 167, 212, 347
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	250
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	157, 337
BmsI	GCATC	4 cut(s)	67, 217, 259, 329
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 281, 313
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 457
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	39, 90
BseLI	CCNNNNNNNGG	2 cut(s)	332, 457
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	459
BshFI	GGCC	4 cut(s)	65, 407, 461, 473
BsiHKAI	GWGCWC	2 cut(s)	353, 399
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	332, 457
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	4 cut(s)	65, 407, 461, 473
Bsp1286I	GDGCHC	2 cut(s)	353, 399
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	384, 438
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	4 cut(s)	65, 407, 461, 473
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	157, 337
BspQI	GCTCTTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	384, 438
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	2 cut(s)	113, 387
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	39, 90
BstKTI	GATC	2 cut(s)	387, 441
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	384, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 195
BstSFI	CTRYAG	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	65, 407, 461, 473
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	39, 90
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviJI	RGCY	9 cut(s)	65, 113, 198, 336, 357, 407, 422, 461, 473
CviKI_1	RGCY	9 cut(s)	65, 113, 198, 336, 357, 407, 422, 461, 473
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	386, 440
DpnII	GATC	2 cut(s)	384, 438
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	113, 387
EarI	CTCTTC	2 cut(s)	113, 387
Eco147I	AGGCCT	2 cut(s)	65, 473
Eco81I	CCTNAGG	1 cut(s)	468
FaiI	YATR	3 cut(s)	18, 201, 257
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	26, 77
Fsp4HI	GCNGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	65, 407, 461, 473
HapII	CCGG	1 cut(s)	408
HinfI	GANTC	2 cut(s)	54, 169
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	6 cut(s)	22, 152, 164, 191, 278, 386
Hpy166II	GTNNAC	3 cut(s)	12, 30, 244
Hpy188I	TCNGA	2 cut(s)	213, 278
Hpy188III	TCNNGA	3 cut(s)	163, 346, 436
Hpy8I	GTNNAC	3 cut(s)	12, 30, 244
HpyAV	CCTTC	2 cut(s)	176, 257
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	104, 369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 195
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	384, 438
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	4 cut(s)	95, 367, 411, 421
LweI	GCATC	4 cut(s)	67, 217, 259, 329
MaeII	ACGT	1 cut(s)	399
MalI	GATC	2 cut(s)	386, 440
MboI	GATC	2 cut(s)	384, 438
MboII	GAAGA	3 cut(s)	130, 178, 404
MhlI	GDGCHC	2 cut(s)	353, 399
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	1 cut(s)	258
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	43, 98, 140, 185, 326, 370, 463
Mox20I	TGGCCA	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	110, 195
NdeII	GATC	2 cut(s)	384, 438
NlaIV	GGNNCC	2 cut(s)	157, 337
OliI	CACNNNNGTG	1 cut(s)	177
PceI	AGGCCT	2 cut(s)	65, 473
PciSI	GCTCTTC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	157, 337
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	2 cut(s)	384, 438
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	353, 399
SfaNI	GCATC	4 cut(s)	67, 217, 259, 329
SfcI	CTRYAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	258
SseBI	AGGCCT	2 cut(s)	65, 473
SsiI	CCGC	1 cut(s)	423
StuI	AGGCCT	2 cut(s)	65, 473
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	402
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.