Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Reverse (-)

56245566 .. 56249733

Gene Structure 4168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGCCTAATGGCCATAGGAGAATGAGGAGGAAGGATGGTTATATTCAAGAAAATGGTGACACGAGTCAGTCAAATGTAGGTGAAGAACTGGATCCATGGACTGCATGGGCATACAAGCCTCGCACCATTTCAATGTTACTTATTGGTGCATGTTTCCTTATTTGGGTAAGTGGAGCCTTAGATCCCGAAAGCAGTGCATCTGGAGACCTTGTTGCATCTGTAAAAAGGGGTGTATGGGCAATGATAGCAGTTTTTCTTGCTTATTGCTTGTTCCAAGCCCCATCTACGGTTCTTATCAGACCGCATCCTGCAATTTGGCGGTTAGTTCACGGAATGGCTGTTGTTTACCTAGTTGCTCTTACATTTGTACTTTTTCAGAAGCGTGATGATGCTCGGCAGTTCATGAAGTTTCTGCATCCTGATCTTGGTGTTGAACTCCCAGAAAGATCTTATGGTGCTGATTGTCGTATATATTTGCCTGATAATCCTAAAAGCAGGTTTAAGAATGTTTATGAAACACTTTTTGATGAATTTGTTGTCGCTCATATAATTGGGTGGTGGGGAAAAGCTATATTGATCCGTAATCAGCCCCTTTTGTGGGTGCTTTCAATTGGATTTGAGTTGATGGAGCTTACCTTCCGTCATATGTTACCAAATTTCAATGAATGCTGGTGGGATAGTATTATTCTTGACATTTTGATCTGCAACTGGTTTGGTATCTGGGCAGGAATGCATACTGTTAGGTACTTTGATGGAAAAACATACAAGTGGGTCGGTCTAAGTCGTCAGCCGAATATTATTGGAAAAGTGAAACGAACTCTGGGACAATTTACACCAGCTCAGTGGGACAAAGATGAGTGGCATCCATTACTTGGTCCATGGCGTTTCGTTCAAGTCATCACTCTTTGCATAGTATTCATGACTGTAGAGCTTAATACATTCTTTTTAAAGTTCTGTCTATGGATTCCTCCCCGCAACCCTGTGATCGTATATAGGTTGATCTTGTGGTGGCTAATTGCAATTCCAACAATTCGCGAGTACAATTCATACCTTCAAGACCGGAAACCAGTGAAGAAGGTTGGAGCATTTTGTTGGCTTTCTGTTGCTATTTGCATTGTTGAACTTCTCATTTGCATCAAGTTTGGACATGGATTATATCCGAAACCAATGCCATTATGGCTGGTAGTGTTTTGGATGTCTGTTGGAGCGGCACTTGTAATATTTTTGATTGTTTGGTCTTGGCAATTGCATCGAACTATAGGGAGAAAGAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

426

Amino Acids

49.75

Weight (kDa)

9.35

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	102 - 383	6.9e-114	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccBSI	CCGCTC	1 cut(s)	1211
AccII	CGCG	1 cut(s)	1038
AciI	CCGC	4 cut(s)	305, 322, 976, 1211
AclWI	GGATC	4 cut(s)	89, 102, 179, 574
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	533, 658
AfaI	GTAC	3 cut(s)	372, 749, 1043
AfiI	CCNNNNNNNGG	6 cut(s)	166, 289, 428, 600, 601, 875
AgsI	TTSAA	8 cut(s)	50, 135, 437, 612, 664, 896, 1058, 1124
AluBI	AGCT	4 cut(s)	572, 634, 842, 934
AluI	AGCT	4 cut(s)	572, 634, 842, 934
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	4 cut(s)	89, 102, 179, 574
AoxI	GGCC	1 cut(s)	13
ApoI	RAATTY	2 cut(s)	533, 658
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	2 cut(s)	71, 95
AvaII	GGWCC	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	64
BccI	CCATC	4 cut(s)	32, 292, 622, 749
BcgI	CGANNNNNNTGC	6 cut(s)	179, 213, 1153, 1187, 1235, 1269
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	927, 1260
BfuAI	ACCTGC	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	1180
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	1 cut(s)	1212
BlsI	GCNGC	1 cut(s)	1213
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	3 cut(s)	6, 96, 178
BmsI	GCATC	8 cut(s)	209, 227, 316, 382, 427, 874, 1146, 1261
BoxI	GACNNNNGTC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	98, 881
BsaWI	WCCGGW	1 cut(s)	1062
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 289, 428, 600, 601, 875
Bse1I	ACTGG	3 cut(s)	96, 716, 1070
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	98, 881
BseGI	GGATG	5 cut(s)	43, 307, 418, 865, 1203
BseLI	CCNNNNNNNGG	6 cut(s)	166, 289, 428, 600, 601, 875
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	857
BseNI	ACTGG	3 cut(s)	96, 716, 1070
BseRI	GAGGAG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	1038
BshFI	GGCC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	1063
BslFI	GGGAC	2 cut(s)	840, 863
BslI	CCNNNNNNNGG	6 cut(s)	166, 289, 428, 600, 601, 875
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	2 cut(s)	840, 863
BsmI	GAATGC	2 cut(s)	674, 738
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	201
Bsp143I	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
Bsp19I	CCATGG	2 cut(s)	98, 881
Bsp68I	TCGCGA	1 cut(s)	1038
BspACI	CCGC	4 cut(s)	305, 322, 976, 1211
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	1038
BspHI	TCATGA	2 cut(s)	405, 921
BspLI	GGNNCC	3 cut(s)	6, 96, 178
BspMI	ACCTGC	1 cut(s)	489
BspPI	GGATC	4 cut(s)	89, 102, 179, 574
BspTNI	GGTCTC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	1211
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	96, 716, 1070
BssECI	CCNNGG	2 cut(s)	98, 881
BssMI	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
BssSI	CACGAG	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	98, 881
Bst2BI	CACGAG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	292, 742, 928
BstDEI	CTNAG	3 cut(s)	181, 782, 843
BstDSI	CCRYGG	2 cut(s)	98, 881
BstF5I	GGATG	5 cut(s)	43, 307, 418, 865, 1203
BstFNI	CGCG	1 cut(s)	1038
BstKTI	GATC	8 cut(s)	97, 187, 427, 452, 582, 705, 990, 1005
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 1180
BstNSI	RCATGY	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	66
BstSFI	CTRYAG	2 cut(s)	927, 1260
BstUI	CGCG	1 cut(s)	1038
BstX2I	RGATCY	3 cut(s)	94, 184, 449
BstXI	CCANNNNNNTGG	1 cut(s)	846
BstYI	RGATCY	3 cut(s)	94, 184, 449
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	2 cut(s)	98, 881
BtsCI	GGATG	5 cut(s)	43, 307, 418, 865, 1203
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	202, 851, 1077
BtuMI	TCGCGA	1 cut(s)	1038
BveI	ACCTGC	1 cut(s)	489
CciI	TCATGA	2 cut(s)	405, 921
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	3 cut(s)	371, 748, 1042
CviAII	CATG	7 cut(s)	99, 108, 153, 406, 882, 922, 1151
CviQI	GTAC	3 cut(s)	371, 748, 1042
DdeI	CTNAG	3 cut(s)	181, 782, 843
DpnI	GATC	8 cut(s)	96, 186, 426, 451, 581, 704, 989, 1004
DpnII	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
DraI	TTTAAA	1 cut(s)	951
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	98, 881
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	878
EcoT14I	CCWWGG	2 cut(s)	98, 881
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	98, 881
FaeI	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
FaqI	GGGAC	2 cut(s)	840, 863
FatI	CATG	7 cut(s)	98, 107, 152, 405, 881, 921, 1150
FauI	CCCGC	1 cut(s)	983
FauNDI	CATATG	1 cut(s)	648
Fnu4HI	GCNGC	1 cut(s)	1212
FokI	GGATG	5 cut(s)	50, 294, 405, 852, 1210
Fsp4HI	GCNGC	1 cut(s)	1212
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	1 cut(s)	1212
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	1 cut(s)	1063
Hin1II	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
HinfI	GANTC	2 cut(s)	67, 967
HpaII	CCGG	1 cut(s)	1063
HphI	GGTGA	2 cut(s)	71, 95
Hpy166II	GTNNAC	2 cut(s)	331, 349
Hpy188I	TCNGA	3 cut(s)	302, 381, 1164
Hpy188III	TCNNGA	9 cut(s)	50, 188, 204, 406, 422, 692, 922, 1037, 1058
Hpy8I	GTNNAC	2 cut(s)	331, 349
HpyAV	CCTTC	4 cut(s)	28, 649, 1064, 1072
HpyCH4III	ACNGT	3 cut(s)	292, 742, 928
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 1180
HpyF3I	CTNAG	3 cut(s)	181, 782, 843
Hsp92II	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
Kzo9I	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
LmnI	GCTCC	5 cut(s)	4, 176, 631, 1085, 1208
LweI	GCATC	8 cut(s)	209, 227, 316, 382, 427, 874, 1146, 1261
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	3 cut(s)	59, 138, 651
MalI	GATC	8 cut(s)	96, 186, 426, 451, 581, 704, 989, 1004
MbiI	CCGCTC	1 cut(s)	1211
MboI	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
MboII	GAAGA	2 cut(s)	98, 1087
MfeI	CAATTG	2 cut(s)	612, 1247
MflI	RGATCY	3 cut(s)	94, 184, 449
MlsI	TGGCCA	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	3 cut(s)	1052, 1063, 1186
MnlI	CCTC	5 cut(s)	21, 24, 132, 981, 1266
Mox20I	TGGCCA	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	3 cut(s)	504, 936, 950
MslI	CAYNNNNRTG	2 cut(s)	134, 769
Msp20I	TGGCCA	1 cut(s)	15
MspI	CCGG	1 cut(s)	1063
MunI	CAATTG	2 cut(s)	612, 1247
Mva1269I	GAATGC	2 cut(s)	674, 738
MvnI	CGCG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	2 cut(s)	248, 1180
NcoI	CCATGG	2 cut(s)	98, 881
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
NlaIII	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
NlaIV	GGNNCC	3 cut(s)	6, 96, 178
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	59
NruI	TCGCGA	1 cut(s)	1038
NsiI	ATGCAT	1 cut(s)	738
NspI	RCATGY	1 cut(s)	156
PagI	TCATGA	2 cut(s)	405, 921
PctI	GAATGC	2 cut(s)	674, 738
PfeI	GAWTC	1 cut(s)	967
PflMI	CCANNNNNTGG	1 cut(s)	875
PkrI	GCNGC	1 cut(s)	1213
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PshAI	GACNNNNGTC	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	6, 96, 178
PspPI	GGNCC	1 cut(s)	878
PsuI	RGATCY	3 cut(s)	94, 184, 449
RruI	TCGCGA	1 cut(s)	1038
RsaI	GTAC	3 cut(s)	372, 749, 1043
RsaNI	GTAC	3 cut(s)	371, 748, 1042
RseI	CAYNNNNRTG	2 cut(s)	134, 769
SaqAI	TTAA	3 cut(s)	504, 936, 950
SatI	GCNGC	1 cut(s)	1212
Sau3AI	GATC	8 cut(s)	94, 184, 424, 449, 579, 702, 987, 1002
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	76
SfaNI	GCATC	8 cut(s)	209, 227, 316, 382, 427, 874, 1146, 1261
SfcI	CTRYAG	2 cut(s)	927, 1260
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	2 cut(s)	134, 769
SsiI	CCGC	4 cut(s)	305, 322, 976, 1211
SspI	AATATT	2 cut(s)	799, 1224
SspMI	CTAG	1 cut(s)	353
StyI	CCWWGG	2 cut(s)	98, 881
TaaI	ACNGT	3 cut(s)	292, 742, 928
TaqI	TCGA	1 cut(s)	1255
TaqII	GACCGA	1 cut(s)	767
TatI	WGTACW	2 cut(s)	370, 1041
TauI	GCSGC	1 cut(s)	1214
TfiI	GAWTC	1 cut(s)	967
Tru1I	TTAA	3 cut(s)	504, 936, 950
Tru9I	TTAA	3 cut(s)	504, 936, 950
TscAI	CASTG	3 cut(s)	202, 851, 1077
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	7 cut(s)	394, 422, 531, 546, 681, 910, 1038
TspGWI	ACGGA	3 cut(s)	348, 572, 632
TspRI	CASTG	3 cut(s)	202, 851, 1077
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	2 cut(s)	533, 658
XceI	RCATGY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	2 cut(s)	105, 1176
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.