Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Reverse (-)

2316052 .. 2321589

Gene Structure 5538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1033100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGTACTTATCATGCAAATATAATAACCTTAATAATGTTACATGTGTAGCGAACAAGTTGGCGTCTTTGTATTCGAGGCTGATGGAGCCTAATGGTCACAGGAGAGTGAGGAGAAAGGATGTTCTAGAAAATGGTGACATGGGTCAGTCAAATACAGGCGATGAACTGGATCCATGGACTGCATGGGCATACAAGCCTCGGACCATTTCGATGCTGCTTATTGGCGCATGTTTCCTTATTTGGGTAAGTGGAGCCCTAGACCCAGAAAGCAGTGCATCTGGAGATGTTGTTACATCCGTAAAAAGGGGTGTATGGGCGATGATTGCAGTTTTTCTTGCTTATTGCTTGCTGCAAGCCCCGTCTACGGTTCTTATCAGACCACATCCTGCAATTTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTATTTCTCTCACATTTTTGCTTTTCCAGAAACGTGACCATGCTCGGCAGTTTATGAAGTTTCTCCATCCAGATCTTGGTGTTGAACTTCCAGAAAAATCTTATGGTGCTGATTGTCGCATATATTTGCCTGAAAATCCTACTAACAGGTTTAAGAATGTTTATGAAACACTTTTTGATGAATTTGTTGTGGCTCATATAGTTGGGTGGTGGGGAAAAGCTATATTGATCCGCAATCAGCCCCTTCTGTGGGTGCTTTCCATCGGATTTGAGCTGATGGAGCTTACCTTCCGCCATATGTTACCGAACTTCAATGAATGCTGGTGGGACAGTATCATTCTTGACATTTTGATCTGCAACTGGTTTGGTATCTGGGCAGGAATGCATACGGTTAGGTACTTTGATGGAAAAACATACAAGTGGGTTGGTCTAAGCCGTCAGCCGAATATTATTGGAAAAGTCAAAAGAACACTGGGGCAATTTACACCAGCTCAGTGGGACAAGGACGAATGGCATCCCTTGCTTGGTCCATGGCGTTTCATTCAAGTCCTCACTCTTTGCATTGTATTCATGACAGTAGAGCTTAATACATTCTTTCTTAAGTTCTGTTTATGGATTCCTCCCCGGAACCCCTTGATAGTGTATAGGTTGATCCTGTGGTGGCTAATTGCAATTCCGACAATTCGCGAGTACAATTCATACCTTCAAGATCGAAAACCAGCGAAGAAGGTTGGGGCATTTTGTTGGCTTTCCGTAGCTATTTGCATCATTGAACTTCTCATTTGCATCAAGTTTGGACATGGATTATATCCTAAGCCAATGCCATATTGGCTTGTTACGTTATGGGCATCTACCGGAGCGGTCCTCGTAATATTTTTGATAATTTGGTCATGGCAACTGCATCAAAGTTTACGGCGAAAGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

452

Amino Acids

52.6

Weight (kDa)

9.33

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	127 - 408	3.8e-113	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	1286
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	1113
AciI	CCGC	3 cut(s)	658, 718, 1286
AclWI	GGATC	4 cut(s)	164, 177, 649, 1072
AcsI	RAATTY	1 cut(s)	608
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	3 cut(s)	5, 824, 1118
AfiI	CCNNNNNNNGG	7 cut(s)	241, 303, 364, 503, 675, 676, 950
AflII	CTTAAG	1 cut(s)	1025
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	512, 739, 971, 1133, 1199
AluBI	AGCT	6 cut(s)	647, 700, 709, 917, 1009, 1184
AluI	AGCT	6 cut(s)	647, 700, 709, 917, 1009, 1184
AlwI	GGATC	4 cut(s)	164, 177, 649, 1072
ApeKI	GCWGC	2 cut(s)	214, 349
ApoI	RAATTY	1 cut(s)	608
AspLEI	GCGC	2 cut(s)	227, 399
AspS9I	GGNCC	3 cut(s)	201, 953, 1288
AsuC2I	CCSGG	1 cut(s)	1051
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	3 cut(s)	201, 953, 1288
BamHI	GGATCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	201, 336
BccI	CCATC	5 cut(s)	76, 501, 695, 697, 824
BceAI	ACGGC	1 cut(s)	846
BcnI	CCSGG	1 cut(s)	1051
BfaI	CTAG	2 cut(s)	125, 257
BfoI	RGCGCY	1 cut(s)	400
BfrI	CTTAAG	1 cut(s)	1025
BglI	GCCNNNNNGGC	1 cut(s)	1255
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	2 cut(s)	215, 350
BlsI	GCNGC	2 cut(s)	216, 351
Bme1390I	CCNGG	1 cut(s)	1051
Bme18I	GGWCC	3 cut(s)	201, 953, 1288
BmgT120I	GGNCC	3 cut(s)	201, 953, 1288
BmiI	GGNNCC	4 cut(s)	87, 171, 253, 1055
BmrFI	CCNGG	1 cut(s)	1051
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	7 cut(s)	201, 284, 949, 1200, 1221, 1283, 1336
BmuI	ACTGGG	1 cut(s)	908
BoxI	GACNNNNGTC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	1275, 1307
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	1239
BpuMI	CCSGG	1 cut(s)	1051
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	4 cut(s)	173, 197, 956, 1049
BsaWI	WCCGGW	1 cut(s)	1280
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	7 cut(s)	241, 303, 364, 503, 675, 676, 950
Bse1I	ACTGG	3 cut(s)	171, 791, 903
BseDI	CCNNGG	4 cut(s)	173, 197, 956, 1049
BseGI	GGATG	5 cut(s)	124, 293, 382, 493, 940
BseLI	CCNNNNNNNGG	7 cut(s)	241, 303, 364, 503, 675, 676, 950
BseMII	CTCAG	1 cut(s)	932
BseNI	ACTGG	3 cut(s)	171, 791, 903
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	201, 336
Bsh1236I	CGCG	1 cut(s)	1113
BsiSI	CCGG	2 cut(s)	1051, 1281
BslFI	GGGAC	2 cut(s)	767, 938
BslI	CCNNNNNNNGG	7 cut(s)	241, 303, 364, 503, 675, 676, 950
BsmFI	GGGAC	2 cut(s)	767, 938
BsmI	GAATGC	2 cut(s)	749, 813
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
Bsp19I	CCATGG	2 cut(s)	173, 956
Bsp68I	TCGCGA	1 cut(s)	1113
BspACI	CCGC	3 cut(s)	658, 718, 1286
BspCNI	CTCAG	1 cut(s)	931
BspFNI	CGCG	1 cut(s)	1113
BspHI	TCATGA	1 cut(s)	996
BspLI	GGNNCC	4 cut(s)	87, 171, 253, 1055
BspPI	GGATC	4 cut(s)	164, 177, 649, 1072
BspTI	CTTAAG	1 cut(s)	1025
BsrBI	CCGCTC	1 cut(s)	1286
BsrI	ACTGG	3 cut(s)	171, 791, 903
BssECI	CCNNGG	4 cut(s)	173, 197, 956, 1049
BssMI	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	173, 956
Bst4CI	ACNGT	4 cut(s)	367, 758, 817, 1003
BstACI	GRCGYC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	1025
BstAPI	GCANNNNNTGC	1 cut(s)	946
BstC8I	GCNNGC	2 cut(s)	347, 354
BstDEI	CTNAG	3 cut(s)	857, 918, 1239
BstDSI	CCRYGG	2 cut(s)	173, 956
BstF5I	GGATG	5 cut(s)	124, 293, 382, 493, 940
BstFNI	CGCG	1 cut(s)	1113
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	2 cut(s)	227, 399
BstKTI	GATC	6 cut(s)	172, 502, 657, 780, 1080, 1138
BstMBI	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 323, 706, 946, 1255, 1348
BstNSI	RCATGY	2 cut(s)	45, 231
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	1049
BstUI	CGCG	1 cut(s)	1113
BstV1I	GCAGC	2 cut(s)	201, 336
BstX2I	RGATCY	2 cut(s)	169, 499
BstXI	CCANNNNNNTGG	1 cut(s)	921
BstYI	RGATCY	2 cut(s)	169, 499
BtgI	CCRYGG	2 cut(s)	173, 956
BtgZI	GCGATG	2 cut(s)	174, 332
BtsCI	GGATG	5 cut(s)	124, 293, 382, 493, 940
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	277, 896, 926
BtuMI	TCGCGA	1 cut(s)	1113
Cac8I	GCNNGC	2 cut(s)	347, 354
CciI	TCATGA	1 cut(s)	996
CfoI	GCGC	2 cut(s)	227, 399
Cfr13I	GGNCC	3 cut(s)	201, 953, 1288
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	4, 823, 1117
CviQI	GTAC	3 cut(s)	4, 823, 1117
DdeI	CTNAG	3 cut(s)	857, 918, 1239
DpnI	GATC	6 cut(s)	171, 501, 656, 779, 1079, 1137
DpnII	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
EciI	GGCGGA	1 cut(s)	707
Eco130I	CCWWGG	2 cut(s)	173, 956
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	201, 953, 1288
EcoT14I	CCWWGG	2 cut(s)	173, 956
EcoT22I	ATGCAT	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	173, 956
FaqI	GGGAC	2 cut(s)	767, 938
FauNDI	CATATG	1 cut(s)	723
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	2 cut(s)	215, 350
FokI	GGATG	5 cut(s)	131, 280, 369, 480, 927
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	215, 350
FspBI	CTAG	2 cut(s)	125, 257
GlaI	GCGC	2 cut(s)	226, 398
GluI	GCNGC	2 cut(s)	215, 350
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	400
HapII	CCGG	2 cut(s)	1051, 1281
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	2 cut(s)	227, 399
Hin1I	GRCGYC	1 cut(s)	62
Hin6I	GCGC	2 cut(s)	225, 397
HinP1I	GCGC	2 cut(s)	225, 397
HinfI	GANTC	1 cut(s)	1042
HpaII	CCGG	2 cut(s)	1051, 1281
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	363, 424, 1337
Hpy188I	TCNGA	4 cut(s)	201, 377, 692, 1104
Hpy188III	TCNNGA	9 cut(s)	125, 279, 454, 497, 518, 767, 997, 1112, 1133
Hpy8I	GTNNAC	3 cut(s)	363, 424, 1337
HpyAV	CCTTC	4 cut(s)	680, 724, 1139, 1147
HpyCH4III	ACNGT	4 cut(s)	367, 758, 817, 1003
HpyCH4IV	ACGT	2 cut(s)	460, 1265
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 323, 706, 946, 1255, 1348
HpyF3I	CTNAG	3 cut(s)	857, 918, 1239
HpySE526I	ACGT	2 cut(s)	460, 1265
Hsp92I	GRCGYC	1 cut(s)	62
HspAI	GCGC	2 cut(s)	225, 397
Kzo9I	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
LmnI	GCTCC	4 cut(s)	85, 251, 706, 1283
Lsp1109I	GCAGC	2 cut(s)	201, 336
LweI	GCATC	7 cut(s)	201, 284, 949, 1200, 1221, 1283, 1336
MaeI	CTAG	2 cut(s)	125, 257
MaeII	ACGT	2 cut(s)	460, 1265
MaeIII	GTNAC	7 cut(s)	37, 95, 134, 289, 461, 726, 1261
MalI	GATC	6 cut(s)	171, 501, 656, 779, 1079, 1137
MbiI	CCGCTC	1 cut(s)	1286
MboI	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
MboII	GAAGA	1 cut(s)	1162
MflI	RGATCY	2 cut(s)	169, 499
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	8 cut(s)	390, 608, 905, 1092, 1098, 1107, 1120, 1308
MmeI	TCCRAC	1 cut(s)	1127
MnlI	CCTC	7 cut(s)	69, 102, 207, 986, 1056, 1301, 1341
Mph1103I	ATGCAT	1 cut(s)	813
MseI	TTAA	4 cut(s)	30, 579, 1011, 1026
MslI	CAYNNNNRTG	2 cut(s)	209, 844
MspCI	CTTAAG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	1051, 1281
MspR9I	CCNGG	1 cut(s)	1051
Mva1269I	GAATGC	2 cut(s)	749, 813
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	6 cut(s)	85, 323, 706, 946, 1255, 1348
NciI	CCSGG	1 cut(s)	1051
NcoI	CCATGG	2 cut(s)	173, 956
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
NlaIV	GGNNCC	4 cut(s)	87, 171, 253, 1055
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	3 cut(s)	95, 134, 461
NruI	TCGCGA	1 cut(s)	1113
NsiI	ATGCAT	1 cut(s)	813
NspI	RCATGY	2 cut(s)	45, 231
PagI	TCATGA	1 cut(s)	996
PciI	ACATGT	1 cut(s)	41
PctI	GAATGC	2 cut(s)	749, 813
PfeI	GAWTC	1 cut(s)	1042
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	2 cut(s)	216, 351
PscI	ACATGT	1 cut(s)	41
PshAI	GACNNNNGTC	1 cut(s)	141
PspN4I	GGNNCC	4 cut(s)	87, 171, 253, 1055
PspPI	GGNCC	3 cut(s)	201, 953, 1288
PsuI	RGATCY	2 cut(s)	169, 499
RruI	TCGCGA	1 cut(s)	1113
RsaI	GTAC	3 cut(s)	5, 824, 1118
RsaNI	GTAC	3 cut(s)	4, 823, 1117
RseI	CAYNNNNRTG	2 cut(s)	209, 844
SaqAI	TTAA	4 cut(s)	30, 579, 1011, 1026
SatI	GCNGC	2 cut(s)	215, 350
Sau3AI	GATC	6 cut(s)	169, 499, 654, 777, 1077, 1135
Sau96I	GGNCC	3 cut(s)	201, 953, 1288
ScrFI	CCNGG	1 cut(s)	1051
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	7 cut(s)	201, 284, 949, 1200, 1221, 1283, 1336
SinI	GGWCC	3 cut(s)	201, 953, 1288
SmiMI	CAYNNNNRTG	2 cut(s)	209, 844
SmlI	CTYRAG	1 cut(s)	1025
SmoI	CTYRAG	1 cut(s)	1025
Sse9I	AATT	8 cut(s)	390, 608, 905, 1092, 1098, 1107, 1120, 1308
SsiI	CCGC	3 cut(s)	658, 718, 1286
SspI	AATATT	2 cut(s)	874, 1299
SspMI	CTAG	2 cut(s)	125, 257
StyD4I	CCNGG	1 cut(s)	1049
StyI	CCWWGG	2 cut(s)	173, 956
TaaI	ACNGT	4 cut(s)	367, 758, 817, 1003
TaiI	ACGT	2 cut(s)	463, 1268
TaqI	TCGA	3 cut(s)	74, 209, 1138
TasI	AATT	8 cut(s)	390, 608, 905, 1092, 1098, 1107, 1120, 1308
TatI	WGTACW	2 cut(s)	3, 1116
TfiI	GAWTC	1 cut(s)	1042
Tru1I	TTAA	4 cut(s)	30, 579, 1011, 1026
Tru9I	TTAA	4 cut(s)	30, 579, 1011, 1026
TscAI	CASTG	3 cut(s)	277, 903, 926
TseFI	GTSAC	3 cut(s)	95, 134, 461
TseI	GCWGC	2 cut(s)	214, 349
Tsp45I	GTSAC	3 cut(s)	95, 134, 461
TspDTI	ATGAA	9 cut(s)	177, 395, 497, 606, 621, 756, 955, 985, 1113
TspGWI	ACGGA	2 cut(s)	286, 1168
TspRI	CASTG	3 cut(s)	277, 903, 926
Van91I	CCANNNNNTGG	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	1025
VpaK11BI	GGWCC	3 cut(s)	201, 953, 1288
XapI	RAATTY	1 cut(s)	608
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	2 cut(s)	45, 231
XcmI	CCANNNNNNNNNTGG	3 cut(s)	180, 500, 1251
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	2 cut(s)	125, 257
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.