Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Forward (+)

9833311 .. 9837804

Gene Structure 4494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATAGCAGTTTTTCTTGCTTATTGCTTGCTCCAAGCCCCGTCTACGGTTCTTATCAGACCGCATCCTGCAATTTGGCGGTTAGTTCACGGAATGGCTGTTGTTTACCTAGTTGCTCTTACATTTGTACTTTTTCAGAAGCGTGATGATGCTCGGCAGTTCATGAAGTTTCTGCATCCTGATCTTGGTGTTGAACTCCCGGAAAGATCTTATGGTGCTGATTGTCGTATATATTTGCCTGATAATCCTAAAAGCAGGTTTAAGAATGTTTATGAAACACTTTTTGATGAATTTGTTGTCGCTCATATAATTGGGTGGTGGGGAAAAGCTATATTGATCCGTAATCAGCCCCTTTTGTGGGTGCTTTCAATTGGATTTGAGTTGATGGAGCTTACCTTCCGTCATATGTTACCAAATTTCAATGAATGCTGGTGGGATAGTATTATTCTTGACATTTTGATCTGCAACTGGTTTGGTATCTGGGCAGGAATGCATACTGTTAGGTACTTTGATGGAAAAACATACAAGTGGGTCGGTCTAAGTCGTCAGCCCAATATTATTGGAAAAGTGAAACGAACTCTGGGACAATTTACACCAGCTCAGTGGGACAAAGATGAGTGGCATCCATTACTTGGTCCATGGCGTTTCGTTCAAGTCATCACTCTTTGCATAGTATTCATGACTGTAGAGCTTAATACATTCTTTTTAAAGTTCTGTCTATGGATTCCTCCCCGCAACCCTGTGATCGTATATAGGTTGATCTTGTGGTGGCTAATTGCAATTCCAACAATTCGCGAGTACAATTCATACCTTCAAGACCGGAAACCAGTGAAGAAGGTTGGAGCATTTTGTTGGCTTTCTGTTGCTATTTGCATTGTTGAACTTCTCATTTGCATCAAGTTTGGACATGGATTATATCCGAAACCAATGCCATTATGGCTGGTAGTGTTTTGGATGTCTATTGGAGCGGCACTTGTAATATTTTTGATTGTTTGGTCTTGGCAATTGCATCGAACTCTAGGGAGAAAGAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

346

Amino Acids

40.77

Weight (kDa)

9.52

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	21 - 302	3.5e-114	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	968
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	795
AciI	CCGC	4 cut(s)	62, 79, 733, 968
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	290, 415
AfaI	GTAC	3 cut(s)	129, 506, 800
AfiI	CCNNNNNNNGG	5 cut(s)	46, 185, 357, 358, 632
AgsI	TTSAA	6 cut(s)	194, 369, 421, 653, 815, 881
AluBI	AGCT	4 cut(s)	329, 391, 599, 691
AluI	AGCT	4 cut(s)	329, 391, 599, 691
AlwI	GGATC	1 cut(s)	331
ApoI	RAATTY	2 cut(s)	290, 415
AspS9I	GGNCC	1 cut(s)	635
AsuC2I	CCSGG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	635
BccI	CCATC	2 cut(s)	379, 506
BcgI	CGANNNNNNTGC	4 cut(s)	910, 944, 992, 1026
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	2 cut(s)	110, 1019
BfmI	CTRYAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	937
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	1 cut(s)	969
BlsI	GCNGC	1 cut(s)	970
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	635
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	6 cut(s)	73, 139, 184, 631, 903, 1018
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	638
BsaWI	WCCGGW	1 cut(s)	819
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 185, 357, 358, 632
Bse1I	ACTGG	2 cut(s)	473, 827
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	4 cut(s)	64, 175, 622, 960
BseLI	CCNNNNNNNGG	5 cut(s)	46, 185, 357, 358, 632
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	473, 827
Bsh1236I	CGCG	1 cut(s)	795
BsiSI	CCGG	2 cut(s)	200, 820
BslFI	GGGAC	2 cut(s)	597, 620
BslI	CCNNNNNNNGG	5 cut(s)	46, 185, 357, 358, 632
BsmFI	GGGAC	2 cut(s)	597, 620
BsmI	GAATGC	2 cut(s)	431, 495
Bsp143I	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
Bsp19I	CCATGG	1 cut(s)	638
Bsp68I	TCGCGA	1 cut(s)	795
BspACI	CCGC	4 cut(s)	62, 79, 733, 968
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	795
BspHI	TCATGA	2 cut(s)	162, 678
BspMI	ACCTGC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	968
BsrI	ACTGG	2 cut(s)	473, 827
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
BssT1I	CCWWGG	1 cut(s)	638
Bst4CI	ACNGT	3 cut(s)	49, 499, 685
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	539, 600
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	4 cut(s)	64, 175, 622, 960
BstFNI	CGCG	1 cut(s)	795
BstKTI	GATC	6 cut(s)	184, 209, 339, 462, 747, 762
BstMBI	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	937
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	4 cut(s)	64, 175, 622, 960
BtsIMutI	CAGTG	2 cut(s)	608, 834
BtuMI	TCGCGA	1 cut(s)	795
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	29
CciI	TCATGA	2 cut(s)	162, 678
Cfr13I	GGNCC	1 cut(s)	635
Csp6I	GTAC	3 cut(s)	128, 505, 799
CviAII	CATG	4 cut(s)	163, 639, 679, 908
CviQI	GTAC	3 cut(s)	128, 505, 799
DdeI	CTNAG	2 cut(s)	539, 600
DpnI	GATC	6 cut(s)	183, 208, 338, 461, 746, 761
DpnII	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
DraI	TTTAAA	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	638
Eco47I	GGWCC	1 cut(s)	635
EcoT14I	CCWWGG	1 cut(s)	638
EcoT22I	ATGCAT	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	4 cut(s)	166, 642, 682, 911
FaqI	GGGAC	2 cut(s)	597, 620
FatI	CATG	4 cut(s)	162, 638, 678, 907
FauI	CCCGC	1 cut(s)	740
FauNDI	CATATG	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	969
FokI	GGATG	4 cut(s)	51, 162, 609, 967
Fsp4HI	GCNGC	1 cut(s)	969
FspBI	CTAG	2 cut(s)	110, 1019
GluI	GCNGC	1 cut(s)	969
HapII	CCGG	2 cut(s)	200, 820
Hin1II	CATG	4 cut(s)	166, 642, 682, 911
HinfI	GANTC	1 cut(s)	724
HpaII	CCGG	2 cut(s)	200, 820
Hpy166II	GTNNAC	3 cut(s)	45, 88, 106
Hpy188I	TCNGA	3 cut(s)	59, 138, 921
Hpy188III	TCNNGA	6 cut(s)	163, 179, 449, 679, 794, 815
Hpy8I	GTNNAC	3 cut(s)	45, 88, 106
HpyAV	CCTTC	3 cut(s)	406, 821, 829
HpyCH4III	ACNGT	3 cut(s)	49, 499, 685
HpyCH4V	TGCA	9 cut(s)	71, 175, 465, 493, 669, 779, 873, 894, 1009
HpyF10VI	GCNNNNNNNGC	1 cut(s)	937
HpyF3I	CTNAG	2 cut(s)	539, 600
Hsp92II	CATG	4 cut(s)	166, 642, 682, 911
Kzo9I	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
LmnI	GCTCC	4 cut(s)	36, 388, 842, 965
LweI	GCATC	6 cut(s)	73, 139, 184, 631, 903, 1018
MaeI	CTAG	2 cut(s)	110, 1019
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	6 cut(s)	183, 208, 338, 461, 746, 761
MbiI	CCGCTC	1 cut(s)	968
MboI	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
MboII	GAAGA	1 cut(s)	844
MfeI	CAATTG	2 cut(s)	369, 1004
MflI	RGATCY	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	809, 820
MnlI	CCTC	2 cut(s)	738, 1023
Mph1103I	ATGCAT	1 cut(s)	495
MseI	TTAA	3 cut(s)	261, 693, 707
MslI	CAYNNNNRTG	1 cut(s)	526
MspI	CCGG	2 cut(s)	200, 820
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	2 cut(s)	369, 1004
Mva1269I	GAATGC	2 cut(s)	431, 495
MvnI	CGCG	1 cut(s)	795
MwoI	GCNNNNNNNGC	1 cut(s)	937
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
NlaIII	CATG	4 cut(s)	166, 642, 682, 911
NmeAIII	GCCGAG	1 cut(s)	133
NruI	TCGCGA	1 cut(s)	795
NsiI	ATGCAT	1 cut(s)	495
PagI	TCATGA	2 cut(s)	162, 678
PctI	GAATGC	2 cut(s)	431, 495
PfeI	GAWTC	1 cut(s)	724
PflMI	CCANNNNNTGG	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	970
PspPI	GGNCC	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	206
RruI	TCGCGA	1 cut(s)	795
RsaI	GTAC	3 cut(s)	129, 506, 800
RsaNI	GTAC	3 cut(s)	128, 505, 799
RseI	CAYNNNNRTG	1 cut(s)	526
SaqAI	TTAA	3 cut(s)	261, 693, 707
SatI	GCNGC	1 cut(s)	969
Sau3AI	GATC	6 cut(s)	181, 206, 336, 459, 744, 759
Sau96I	GGNCC	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	200
SfaNI	GCATC	6 cut(s)	73, 139, 184, 631, 903, 1018
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	526
SsiI	CCGC	4 cut(s)	62, 79, 733, 968
SspI	AATATT	2 cut(s)	556, 981
SspMI	CTAG	2 cut(s)	110, 1019
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	3 cut(s)	49, 499, 685
TaqI	TCGA	1 cut(s)	1012
TaqII	GACCGA	1 cut(s)	524
TatI	WGTACW	2 cut(s)	127, 798
TauI	GCSGC	1 cut(s)	971
TfiI	GAWTC	1 cut(s)	724
Tru1I	TTAA	3 cut(s)	261, 693, 707
Tru9I	TTAA	3 cut(s)	261, 693, 707
TscAI	CASTG	2 cut(s)	608, 834
TspDTI	ATGAA	7 cut(s)	151, 179, 288, 303, 438, 667, 795
TspGWI	ACGGA	3 cut(s)	105, 329, 389
TspRI	CASTG	2 cut(s)	608, 834
Van91I	CCANNNNNTGG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	2 cut(s)	290, 415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	933
XmiI	GTMKAC	1 cut(s)	44
XspI	CTAG	2 cut(s)	110, 1019
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.