Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Reverse (-)

55530381 .. 55537355

Gene Structure 6975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG332500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCAAATACTACTTTTGCTAGTAAAGTTTATAGCAATGCCTGGTCAGACTGTTAGCTTTATGCTCTTTTACGTTTCATGCAGGGTTCTTATCAGACCGCATCCTGCAATTTGGCGGTTAGTTCACGGAATGGCTGTTGTTTACCTAGTTGCTCTTACATTTGTACTTTTTCAGAAGCGTGATGATGCTCGGCAGTTCATGAAGTTTCTGCATCCTGATCTTGGTGTTGAACTCCCAGAAAGATCTTATGGTGCTGATTGTCGTATATATTTGCCTGATAATCCTAAAAGCAGGTTTAAGAATGTTTATGAAACACTTTTTGATGAATTTGTTGTCGCTCATATAATTGGGTGGTGGGGAAAAGCTATATTGATCCGTAATCAGCCCCTTTTGTGGGTGCTTTCAATTGGATTTGAGTTGATGGAGCTTACCTTCCGTCATATGTTACCAAATTTCAATGAATGCTGGTGGGATAGTATTATTCTTGACATTTTGATCTGCAACTGGTTTGGTATCTGGGCAGGAATGCATACTGTTAGGTACTTTGATGGAAAAACATACAAGTGGGTCGGTCTAAGTCGTCAGCCCAATATTATTGGAAAAGTGAAACGAACTCTGGGACAATTTACACCAGCTCAGTGGGACAAAGATGAGTGGCATCCATTACTTGGTCCATGGCGTTTCGTTCAAGTCATCACTCTTTGCATAGTATTCATGACTGTAGAGCTTAATACATTCTTTTTAAAGTTCTGTCTATGGATTCCTCCCCGCAACCCTGTGATCGTATATAGGTTGATCTTGTGGTGGCTAATTGCAATTCCAACAATTCGTGAGTACAATTCATACCTTCAAGACCGGAAACCAGTGAAGAAGGTTGGAGCATTTTGTTGGCTTTCTGTTGCTATTTGCATTGTTGAACTTCTCATTTGCATCAAGTTTGGACATGGATTATATCCGAAACCAATGCCATTATGGCTGGTAGTGTTTTGGATGTCTGTTGGGGCGGCACTTGTAATATTTTTGATTGTTTGGTCTTGGCAATTGCATCGAACTCTAGGGAGAAAGAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

357

Amino Acids

42.26

Weight (kDa)

9.63

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	33 - 314	3.9e-114	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	668
AciI	CCGC	4 cut(s)	98, 115, 769, 1004
AclWI	GGATC	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	326, 451
AfaI	GTAC	3 cut(s)	165, 542, 836
AfiI	CCNNNNNNNGG	4 cut(s)	221, 393, 394, 668
AgsI	TTSAA	6 cut(s)	230, 405, 457, 689, 851, 917
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	57, 365, 427, 635, 727
AluI	AGCT	5 cut(s)	57, 365, 427, 635, 727
AlwI	GGATC	1 cut(s)	367
ApoI	RAATTY	2 cut(s)	326, 451
AspS9I	GGNCC	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	671
BccI	CCATC	2 cut(s)	415, 542
BcgI	CGANNNNNNTGC	4 cut(s)	946, 980, 1028, 1062
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	3 cut(s)	20, 146, 1055
BfmI	CTRYAG	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	973
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	1 cut(s)	1005
BlsI	GCNGC	1 cut(s)	1006
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	671
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	6 cut(s)	109, 175, 220, 667, 939, 1054
BsaJI	CCNNGG	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	855
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 393, 394, 668
Bse1I	ACTGG	2 cut(s)	509, 863
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	4 cut(s)	100, 211, 658, 996
BseLI	CCNNNNNNNGG	4 cut(s)	221, 393, 394, 668
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	2 cut(s)	509, 863
BsiSI	CCGG	1 cut(s)	856
BslFI	GGGAC	2 cut(s)	633, 656
BslI	CCNNNNNNNGG	4 cut(s)	221, 393, 394, 668
BsmFI	GGGAC	2 cut(s)	633, 656
BsmI	GAATGC	2 cut(s)	467, 531
Bsp143I	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
Bsp19I	CCATGG	1 cut(s)	674
BspACI	CCGC	4 cut(s)	98, 115, 769, 1004
BspCNI	CTCAG	1 cut(s)	649
BspHI	TCATGA	2 cut(s)	198, 714
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	509, 863
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
BssT1I	CCWWGG	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	52, 535, 721
BstDEI	CTNAG	2 cut(s)	575, 636
BstDSI	CCRYGG	1 cut(s)	674
BstF5I	GGATG	4 cut(s)	100, 211, 658, 996
BstKTI	GATC	6 cut(s)	220, 245, 375, 498, 783, 798
BstMBI	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	973
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	720
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	674
BtsCI	GGATG	4 cut(s)	100, 211, 658, 996
BtsIMutI	CAGTG	2 cut(s)	644, 870
BveI	ACCTGC	1 cut(s)	282
CciI	TCATGA	2 cut(s)	198, 714
Cfr13I	GGNCC	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	164, 541, 835
CviAII	CATG	5 cut(s)	78, 199, 675, 715, 944
CviQI	GTAC	3 cut(s)	164, 541, 835
DdeI	CTNAG	2 cut(s)	575, 636
DpnI	GATC	6 cut(s)	219, 244, 374, 497, 782, 797
DpnII	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
DraI	TTTAAA	1 cut(s)	744
Eco130I	CCWWGG	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	674
EcoT22I	ATGCAT	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	674
FaeI	CATG	5 cut(s)	81, 202, 678, 718, 947
FaqI	GGGAC	2 cut(s)	633, 656
FatI	CATG	5 cut(s)	77, 198, 674, 714, 943
FauI	CCCGC	1 cut(s)	776
FauNDI	CATATG	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	1005
FokI	GGATG	4 cut(s)	87, 198, 645, 1003
Fsp4HI	GCNGC	1 cut(s)	1005
FspBI	CTAG	3 cut(s)	20, 146, 1055
GluI	GCNGC	1 cut(s)	1005
HapII	CCGG	1 cut(s)	856
Hin1II	CATG	5 cut(s)	81, 202, 678, 718, 947
HinfI	GANTC	1 cut(s)	760
HpaII	CCGG	1 cut(s)	856
Hpy166II	GTNNAC	2 cut(s)	124, 142
Hpy188I	TCNGA	4 cut(s)	48, 95, 174, 957
Hpy188III	TCNNGA	6 cut(s)	199, 215, 485, 715, 830, 851
Hpy8I	GTNNAC	2 cut(s)	124, 142
HpyAV	CCTTC	3 cut(s)	442, 857, 865
HpyCH4III	ACNGT	3 cut(s)	52, 535, 721
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	973
HpyF3I	CTNAG	2 cut(s)	575, 636
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	81, 202, 678, 718, 947
Kzo9I	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
LmnI	GCTCC	2 cut(s)	424, 878
LweI	GCATC	6 cut(s)	109, 175, 220, 667, 939, 1054
MaeI	CTAG	3 cut(s)	20, 146, 1055
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	6 cut(s)	219, 244, 374, 497, 782, 797
MboI	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
MboII	GAAGA	1 cut(s)	880
MfeI	CAATTG	2 cut(s)	405, 1040
MflI	RGATCY	1 cut(s)	242
MmeI	TCCRAC	2 cut(s)	845, 856
MnlI	CCTC	2 cut(s)	774, 1059
Mph1103I	ATGCAT	1 cut(s)	531
MseI	TTAA	3 cut(s)	297, 729, 743
MslI	CAYNNNNRTG	1 cut(s)	562
MspI	CCGG	1 cut(s)	856
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	2 cut(s)	405, 1040
Mva1269I	GAATGC	2 cut(s)	467, 531
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	973
NcoI	CCATGG	1 cut(s)	674
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
NlaIII	CATG	5 cut(s)	81, 202, 678, 718, 947
NmeAIII	GCCGAG	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	531
PagI	TCATGA	2 cut(s)	198, 714
PctI	GAATGC	2 cut(s)	467, 531
PfeI	GAWTC	1 cut(s)	760
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	1006
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	3 cut(s)	165, 542, 836
RsaNI	GTAC	3 cut(s)	164, 541, 835
RseI	CAYNNNNRTG	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	297, 729, 743
SatI	GCNGC	1 cut(s)	1005
Sau3AI	GATC	6 cut(s)	217, 242, 372, 495, 780, 795
Sau96I	GGNCC	1 cut(s)	671
ScrFI	CCNGG	1 cut(s)	42
SfaNI	GCATC	6 cut(s)	109, 175, 220, 667, 939, 1054
SfcI	CTRYAG	1 cut(s)	720
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	562
SsiI	CCGC	4 cut(s)	98, 115, 769, 1004
SspI	AATATT	2 cut(s)	592, 1017
SspMI	CTAG	3 cut(s)	20, 146, 1055
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	674
TaaI	ACNGT	3 cut(s)	52, 535, 721
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	1048
TaqII	GACCGA	1 cut(s)	560
TatI	WGTACW	2 cut(s)	163, 834
TauI	GCSGC	1 cut(s)	1007
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	3 cut(s)	297, 729, 743
Tru9I	TTAA	3 cut(s)	297, 729, 743
TscAI	CASTG	2 cut(s)	644, 870
TspDTI	ATGAA	8 cut(s)	66, 187, 215, 324, 339, 474, 703, 831
TspGWI	ACGGA	3 cut(s)	141, 365, 425
TspRI	CASTG	2 cut(s)	644, 870
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	2 cut(s)	326, 451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	969
XspI	CTAG	3 cut(s)	20, 146, 1055
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.