Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007249

Physical Location & Seq

Genomic Coordinates Forward (+)

30687065 .. 30694768

Gene Structure 7704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G319700.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGTTACATCAATGGCGGTCATCTTATGTGAGGACCATATTTGTGAGGATGCAGATTCCACATGATACTACCTTTTTAAAGAAAACTTGTAAACTTGATGATCATGGAACTAGTTCATGCATACATATTATGAGTTGCGAGCAAATATCGTCCTTGTACTGGAGGCCGATGGAGCCTAATGGTCATAGGAGAGTGAGGAGAAAGGATAATTATGTTCAAGAAAATGGGGACACAAGTCAGTCAAATGCCGGTGATGAGCTAGATCCATGGACTGCATGGGCATACAGGCCTCGGACCATTTCAATGTTACTTATTGGCGCATGTTTTCTTATTTGGGTAAGTGGAGCCCTAGATCCAGAAAGCAGTGCATCTGGAGATCTTGTTACATCTGTAAAAAGGGGTGTATGGGCAATGATTGCAGTTTTTCTTGCTTATTGCTTGCTGCAAGCCCCATCTACGGTTCTTATCAGACCACATCCTGCAATTTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTGTTGCTCTCACATTTTTGCTTTTCCAGAAGCGCGATGATGCTCGGCAGTTTATGAAGTTTCTCCATCCTGATCTTGGTGTTGAACTTCCAGAAAGATCTTATGGTGCTGATTGTCGCATATATTTGCCTGAAAATCCTAAAAGCAGGTTTAAGAATGTTTATGAAACACTTTTTGATGAATTTGTTGTAGCTCATATAGTTGGGTGGTGGGGAAAGGCTATACTGATCCGTAATCAGCCCCTTCTGTGGGTGCTTTCCATTGGATTTGAGTTGATGGAGCTTACCTTCCGCCACATGTTGCCAAATTTCAATGAATGCTGGTGGGACAGTATTATTCTTGACATTTTGATCTGCAACTGGTTTGGTATCTGGGCAGGAATGCATACAGTTAGATACTTTGATGGAAAAACATACAAGTGGGTTGGTCTAAGTCGACAGCCTAATATTATTGGAAAAGTCAAACGAACACTGGGACAATTTACACCAGCTCAGTGGGACAAAGATGAGTGGCATCCCTTGCTTGGTCCATGGCGTTTCATTCAAGTCCTCACTCTTTGCATTGTATTCATGACTGTAGAGCTCAATACATTCTTTCTTAAGTTCTGTCTATGGATTCCGCCGCGGAACCCCTTGATTGTGTATAGGTTGATCTTGTGGTGGCTAATTGCAATTCCAACAATTCGCGAGTACAATTCATACCTTCAAGATCGAACACCAGTGAAGAAGGTTGGGGCATTTTGTTGGCTTTCCGTAGCTATTTGCATTATTGAACTTCTGATTTGCATAAAGTTTGGACATGGATTGTATCCTAAACCAATGCCACTATGGATGGTAACGTTTTGGATGTCTGCTGGAGTGGCCCTTGTATTATTTTTGATTGTTTGGTCGTGGCAACTGCATCGAAGTTTAGGGAGAAAGAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

483

Amino Acids

56.48

Weight (kDa)

9.32

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15110 AT1G15110 AT1G15110 AT1G15110
fragaria_vesca	FvH4_4g26430 FvH4_4g26430 FvH4_4g26430
malus_domestica	MD13G1033100.v1.1 MD16G1035000.v1.1
prunus_persica	Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1 Prupe.1G319700_v2.0.a1
pyrus_communis	pycom16g02980
rosa_chinensis	RchiOBHm_Chr4g0434061
rosa_laevigata	RLG00000006704
rosa_roxburghii	Rroxscaffold_5G00375470
rosa_rugosa	Rorug04G0273100 Rorug04G0273200
rosa_samantha	Rh4AG328800 Rh4BG336200 Rh4DG332500
rosa_wichuraiana	Rw4G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	657
AccI	GTMKAC	1 cut(s)	955
AccII	CGCG	3 cut(s)	555, 1144, 1206
AciI	CCGC	5 cut(s)	16, 811, 1139, 1142, 1144
AclI	AACGTT	1 cut(s)	1358
AclWI	GGATC	3 cut(s)	257, 347, 742
AcsI	RAATTY	2 cut(s)	701, 826
AfaI	GTAC	2 cut(s)	158, 1211
AfiI	CCNNNNNNNGG	6 cut(s)	159, 457, 596, 768, 769, 1043
AflII	CTTAAG	1 cut(s)	1118
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	7 cut(s)	218, 303, 605, 832, 1064, 1226, 1292
AhlI	ACTAGT	1 cut(s)	110
AluBI	AGCT	6 cut(s)	259, 713, 802, 1010, 1102, 1277
AluI	AGCT	6 cut(s)	259, 713, 802, 1010, 1102, 1277
Alw21I	GWGCWC	1 cut(s)	1104
AlwI	GGATC	3 cut(s)	257, 347, 742
AoxI	GGCC	3 cut(s)	164, 287, 1380
ApeKI	GCWGC	1 cut(s)	442
ApoI	RAATTY	2 cut(s)	701, 826
Asp700I	GAANNNNTTC	1 cut(s)	112
AspLEI	GCGC	3 cut(s)	320, 492, 555
AspS9I	GGNCC	4 cut(s)	33, 294, 1046, 1381
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	3 cut(s)	33, 294, 1046
BanII	GRGCYC	2 cut(s)	349, 1104
Bbv12I	GWGCWC	1 cut(s)	1104
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	6 cut(s)	163, 460, 594, 790, 917, 1345
BcgI	CGANNNNNNTGC	2 cut(s)	1403, 1437
BciVI	GTATCC	1 cut(s)	1338
BclI	TGATCA	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	3 cut(s)	111, 260, 350
BfmI	CTRYAG	1 cut(s)	1095
BfoI	RGCGCY	1 cut(s)	493
BfrI	CTTAAG	1 cut(s)	1118
BfuAI	ACCTGC	1 cut(s)	657
BfuI	GTATCC	1 cut(s)	1338
BglII	AGATCT	2 cut(s)	376, 617
BisI	GCNGC	2 cut(s)	443, 1142
BlsI	GCNGC	2 cut(s)	444, 1143
Bme18I	GGWCC	3 cut(s)	33, 294, 1046
BmgT120I	GGNCC	4 cut(s)	33, 294, 1046, 1381
BmiI	GGNNCC	3 cut(s)	174, 346, 1148
BmrI	ACTGGG	1 cut(s)	1001
BmsI	GCATC	5 cut(s)	39, 377, 550, 1042, 1429
BmuI	ACTGGG	1 cut(s)	1001
BoxI	GACNNNNGTC	1 cut(s)	234
BpmI	CTGGAG	3 cut(s)	181, 393, 1395
BsaJI	CCNNGG	4 cut(s)	266, 290, 1049, 1142
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	6 cut(s)	159, 457, 596, 768, 769, 1043
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	4 cut(s)	164, 884, 996, 1238
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	266, 290, 1049, 1142
BseGI	GGATG	6 cut(s)	54, 475, 586, 1033, 1356, 1371
BseLI	CCNNNNNNNGG	6 cut(s)	159, 457, 596, 768, 769, 1043
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	1025
BseNI	ACTGG	4 cut(s)	164, 884, 996, 1238
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	429
Bsh1236I	CGCG	3 cut(s)	555, 1144, 1206
BshFI	GGCC	3 cut(s)	166, 289, 1382
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	4 cut(s)	242, 860, 1008, 1031
BslI	CCNNNNNNNGG	6 cut(s)	159, 457, 596, 768, 769, 1043
BsmFI	GGGAC	4 cut(s)	242, 860, 1008, 1031
BsmI	GAATGC	2 cut(s)	842, 906
BsnI	GGCC	3 cut(s)	166, 289, 1382
Bsp1286I	GDGCHC	2 cut(s)	349, 1104
Bsp19I	CCATGG	2 cut(s)	266, 1049
Bsp68I	TCGCGA	1 cut(s)	1206
BspACI	CCGC	5 cut(s)	16, 811, 1139, 1142, 1144
BspANI	GGCC	3 cut(s)	166, 289, 1382
BspCNI	CTCAG	1 cut(s)	1024
BspFNI	CGCG	3 cut(s)	555, 1144, 1206
BspHI	TCATGA	1 cut(s)	1089
BspLI	GGNNCC	3 cut(s)	174, 346, 1148
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	3 cut(s)	257, 347, 742
BspTI	CTTAAG	1 cut(s)	1118
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	4 cut(s)	164, 884, 996, 1238
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	4 cut(s)	266, 290, 1049, 1142
BssT1I	CCWWGG	2 cut(s)	266, 1049
Bst4CI	ACNGT	4 cut(s)	460, 851, 910, 1096
BstAFI	CTTAAG	1 cut(s)	1118
BstAPI	GCANNNNNTGC	2 cut(s)	416, 1039
BstC8I	GCNNGC	3 cut(s)	140, 440, 447
BstDEI	CTNAG	2 cut(s)	950, 1011
BstDSI	CCRYGG	3 cut(s)	266, 1049, 1142
BstF5I	GGATG	6 cut(s)	54, 475, 586, 1033, 1356, 1371
BstFNI	CGCG	3 cut(s)	555, 1144, 1206
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	3 cut(s)	320, 492, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 416, 1039, 1379
BstNSI	RCATGY	2 cut(s)	324, 820
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	1095
BstUI	CGCG	3 cut(s)	555, 1144, 1206
BstV1I	GCAGC	1 cut(s)	429
BstX2I	RGATCY	4 cut(s)	262, 352, 376, 617
BstXI	CCANNNNNNTGG	1 cut(s)	1014
BstYI	RGATCY	4 cut(s)	262, 352, 376, 617
BsuI	GTATCC	1 cut(s)	1338
BsuRI	GGCC	3 cut(s)	166, 289, 1382
BtgI	CCRYGG	3 cut(s)	266, 1049, 1142
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	6 cut(s)	54, 475, 586, 1033, 1356, 1371
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	4 cut(s)	370, 989, 1019, 1245
BtuMI	TCGCGA	1 cut(s)	1206
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	3 cut(s)	140, 440, 447
CciI	TCATGA	1 cut(s)	1089
CfoI	GCGC	3 cut(s)	320, 492, 555
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	33, 294, 1046, 1381
Cfr42I	CCGCGG	1 cut(s)	1145
Csp6I	GTAC	2 cut(s)	157, 1210
CviQI	GTAC	2 cut(s)	157, 1210
DdeI	CTNAG	2 cut(s)	950, 1011
DraI	TTTAAA	1 cut(s)	78
EciI	GGCGGA	2 cut(s)	800, 1128
Ecl136II	GAGCTC	1 cut(s)	1102
Eco130I	CCWWGG	2 cut(s)	266, 1049
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	349, 1104
Eco47I	GGWCC	3 cut(s)	33, 294, 1046
Eco53kI	GAGCTC	1 cut(s)	1102
EcoICRI	GAGCTC	1 cut(s)	1102
EcoT14I	CCWWGG	2 cut(s)	266, 1049
EcoT22I	ATGCAT	2 cut(s)	122, 906
EcoT38I	GRGCYC	2 cut(s)	349, 1104
ErhI	CCWWGG	2 cut(s)	266, 1049
FaqI	GGGAC	4 cut(s)	242, 860, 1008, 1031
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	955
Fnu4HI	GCNGC	2 cut(s)	443, 1142
FokI	GGATG	6 cut(s)	61, 462, 573, 1020, 1363, 1378
FriOI	GRGCYC	2 cut(s)	349, 1104
Fsp4HI	GCNGC	2 cut(s)	443, 1142
FspBI	CTAG	3 cut(s)	111, 260, 350
GlaI	GCGC	3 cut(s)	319, 491, 554
GluI	GCNGC	2 cut(s)	443, 1142
GsuI	CTGGAG	3 cut(s)	181, 393, 1395
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	3 cut(s)	166, 289, 1382
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	3 cut(s)	320, 492, 555
Hin6I	GCGC	3 cut(s)	318, 490, 553
HinP1I	GCGC	3 cut(s)	318, 490, 553
HincII	GTYRAC	1 cut(s)	956
HindII	GTYRAC	1 cut(s)	956
HinfI	GANTC	2 cut(s)	55, 1135
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	3 cut(s)	92, 517, 956
Hpy188I	TCNGA	3 cut(s)	294, 470, 1299
Hpy8I	GTNNAC	3 cut(s)	92, 517, 956
HpyAV	CCTTC	4 cut(s)	773, 817, 1232, 1240
HpyCH4III	ACNGT	4 cut(s)	460, 851, 910, 1096
HpyCH4IV	ACGT	1 cut(s)	1358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 416, 1039, 1379
HpyF3I	CTNAG	2 cut(s)	950, 1011
HpySE526I	ACGT	1 cut(s)	1358
HspAI	GCGC	3 cut(s)	318, 490, 553
Ksp22I	TGATCA	1 cut(s)	100
KspI	CCGCGG	1 cut(s)	1145
LmnI	GCTCC	3 cut(s)	172, 344, 799
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	5 cut(s)	39, 377, 550, 1042, 1429
MaeI	CTAG	3 cut(s)	111, 260, 350
MaeII	ACGT	1 cut(s)	1358
MaeIII	GTNAC	4 cut(s)	3, 306, 382, 1354
MboII	GAAGA	1 cut(s)	1255
MflI	RGATCY	4 cut(s)	262, 352, 376, 617
MhlI	GDGCHC	2 cut(s)	349, 1104
MluCI	AATT	9 cut(s)	208, 483, 701, 826, 998, 1185, 1191, 1200, 1213
MmeI	TCCRAC	1 cut(s)	1220
MnlI	CCTC	7 cut(s)	24, 39, 156, 189, 300, 1079, 1434
Mph1103I	ATGCAT	2 cut(s)	122, 906
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	3 cut(s)	77, 672, 1119
MslI	CAYNNNNRTG	3 cut(s)	41, 302, 937
MspA1I	CMGCKG	1 cut(s)	1144
MspCI	CTTAAG	1 cut(s)	1118
MspI	CCGG	1 cut(s)	249
Mva1269I	GAATGC	2 cut(s)	842, 906
MvnI	CGCG	3 cut(s)	555, 1144, 1206
MwoI	GCNNNNNNNGC	4 cut(s)	172, 416, 1039, 1379
NcoI	CCATGG	2 cut(s)	266, 1049
NlaIV	GGNNCC	3 cut(s)	174, 346, 1148
NmeAIII	GCCGAG	1 cut(s)	544
NruI	TCGCGA	1 cut(s)	1206
NsiI	ATGCAT	2 cut(s)	122, 906
NspI	RCATGY	2 cut(s)	324, 820
PagI	TCATGA	1 cut(s)	1089
PceI	AGGCCT	1 cut(s)	289
PciI	ACATGT	1 cut(s)	816
PctI	GAATGC	2 cut(s)	842, 906
PdmI	GAANNNNTTC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	55, 1135
PkrI	GCNGC	2 cut(s)	444, 1143
PscI	ACATGT	1 cut(s)	816
PshAI	GACNNNNGTC	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	1104
Psp1406I	AACGTT	1 cut(s)	1358
PspN4I	GGNNCC	3 cut(s)	174, 346, 1148
PspPI	GGNCC	4 cut(s)	33, 294, 1046, 1381
PsuI	RGATCY	4 cut(s)	262, 352, 376, 617
RruI	TCGCGA	1 cut(s)	1206
RsaI	GTAC	2 cut(s)	158, 1211
RsaNI	GTAC	2 cut(s)	157, 1210
RseI	CAYNNNNRTG	3 cut(s)	41, 302, 937
SacI	GAGCTC	1 cut(s)	1104
SacII	CCGCGG	1 cut(s)	1145
SalI	GTCGAC	1 cut(s)	954
SaqAI	TTAA	3 cut(s)	77, 672, 1119
SatI	GCNGC	2 cut(s)	443, 1142
Sau96I	GGNCC	4 cut(s)	33, 294, 1046, 1381
SduI	GDGCHC	2 cut(s)	349, 1104
SfaNI	GCATC	5 cut(s)	39, 377, 550, 1042, 1429
SfcI	CTRYAG	1 cut(s)	1095
Sfr303I	CCGCGG	1 cut(s)	1145
SgrBI	CCGCGG	1 cut(s)	1145
SinI	GGWCC	3 cut(s)	33, 294, 1046
SmiMI	CAYNNNNRTG	3 cut(s)	41, 302, 937
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	9 cut(s)	208, 483, 701, 826, 998, 1185, 1191, 1200, 1213
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	5 cut(s)	16, 811, 1139, 1142, 1144
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	3 cut(s)	111, 260, 350
SstI	GAGCTC	1 cut(s)	1104
StuI	AGGCCT	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	266, 1049
TaaI	ACNGT	4 cut(s)	460, 851, 910, 1096
TaiI	ACGT	1 cut(s)	1361
TaqI	TCGA	3 cut(s)	955, 1231, 1423
TasI	AATT	9 cut(s)	208, 483, 701, 826, 998, 1185, 1191, 1200, 1213
TatI	WGTACW	2 cut(s)	156, 1209
TauI	GCSGC	1 cut(s)	1144
TfiI	GAWTC	2 cut(s)	55, 1135
Tru1I	TTAA	3 cut(s)	77, 672, 1119
Tru9I	TTAA	3 cut(s)	77, 672, 1119
TscAI	CASTG	4 cut(s)	370, 996, 1019, 1245
TseI	GCWGC	1 cut(s)	442
TspDTI	ATGAA	9 cut(s)	105, 488, 590, 699, 714, 849, 1048, 1078, 1206
TspGWI	ACGGA	2 cut(s)	740, 1261
TspRI	CASTG	4 cut(s)	370, 996, 1019, 1245
Vha464I	CTTAAG	1 cut(s)	1118
VpaK11BI	GGWCC	3 cut(s)	33, 294, 1046
XapI	RAATTY	2 cut(s)	701, 826
XceI	RCATGY	2 cut(s)	324, 820
XcmI	CCANNNNNNNNNTGG	3 cut(s)	273, 593, 1344
XmiI	GTMKAC	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	112
XspI	CTAG	3 cut(s)	111, 260, 350
Zsp2I	ATGCAT	2 cut(s)	122, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.