AT1G15320

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012547
Physical Location & Seq
Reverse (-)
5272256 .. 5274074
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15320.1

Sequence Viewer

Length: 924 bp
ATGAGATTACAAGAGTTGGTTCTTGTGAAAATCAGCTTAGTTTTCTTATGGTTAATTGGGTTTGTCTTCCTGCAACGTAGTGAAGAGAATGGATTTGAAGAACCAAACAATGGGGAAGAACTTTCCTGGGATGATCTGGAGAGAGAAGCTGCTAGTAATATATCATCTAAAAGATCTCATGCTGAGAGATCTCACCAACACGAATCTTTTACAAAAGGTGACGAACTTTCTGGAGACTTGTACGAACTGTGGAGGCAAGAACAGAACAGCATTGCGGCAAGGCTAGACAAAGAGCTAAAATCCAGGTGGGAACTCGATGAACTGATTGAAGAACAGCTGAGCAGATACCAGTCCCATTACGACAATTCCATGGTTTCAACTTTCTTAAAGGATGTCTCTAACCTCGTCTTACCCACGTGGATACCACCTCATGAGCTAGCTGCTGTGGCCTGGCTTGGAGACTGGCGTCCCACCTCCATTCTTGACCTTGTCCGCATTCTGGCAGCTCAAAACCCCTCCTTCTCTCTGTCTGAGTCGAGTTTACGCGTGCTCTCTCAGCTTTTACGTGAGATACGCATCGAAGAGGCCGTTATTGATGAGGAATATGCAGAAATTCAGGCCACCGGTGTCTTGTACCTCCCTTTTTCCCCGCTCTGCAATACTCGGTTGCATGAAGAAGCTCTGCGTTCTGTGCAGGAGCTGTTTGGGAACATACATAAAGTCATCTCAAAGGCACAACGACTCAGGTATAAAGTGTTGGAGCTGGTGATGAAGAAGCTGCTGAATCAAACGGATACAGCCGAGTTTGTGGTCGCATTTGCAGGGATTCAAGACGCCATACACCAGTTTGGAGAGCAGAAGAAGCTAAGAAAGATTTACCCAGCAGTTCCTTCACCTCTGAAGGGATCAGGATCATCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

307

Amino Acids

35.22

Weight (kDa)

5.25

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 94 - 165 6.1e-15 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15320 AT1G15320
fragaria_vesca FvH4_6g29541
malus_domestica MD17G1213300.v1.1
prunus_persica Prupe.3G088600_v2.0.a1 Prupe.3G088600_v2.0.a1
pyrus_communis pycom17g21820
rosa_chinensis RchiOBHm_Chr2g0135091
rosa_laevigata RLG00000019441
rosa_multiflora Rmu_co8282347.1_g000001 Rmu_sc0001385.1_g000014 Rmu_sc0003543.1_g000003
rosa_roxburghii Rroxscaffold_2G00109490
rosa_rugosa Rorug02G0322700
rosa_samantha Rh2AG371900 Rh2BG379600 Rh2CG358700 Rh2DG396200
rosa_wichuraiana Rw0G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 652
AccII CGCG 1 cut(s) 546
AciI CCGC 3 cut(s) 275, 493, 650
AclWI GGATC 2 cut(s) 913, 919
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 1 cut(s) 920
AcvI CACGTG 1 cut(s) 417
AcyI GRCGYC 2 cut(s) 466, 834
AfaI GTAC 2 cut(s) 242, 635
AfiI CCNNNNNNNGG 3 cut(s) 110, 499, 902
AflIII ACRYGT 1 cut(s) 544
AgeI ACCGGT 1 cut(s) 623
AgsI TTSAA 4 cut(s) 98, 329, 378, 830
AjnI CCWGG 3 cut(s) 125, 302, 449
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 3 cut(s) 228, 400, 453
AlwI GGATC 2 cut(s) 913, 919
AlwNI CAGNNNCTG 1 cut(s) 700
AoxI GGCC 3 cut(s) 447, 585, 618
ApeKI GCWGC 4 cut(s) 149, 440, 503, 778
ApoI RAATTY 1 cut(s) 612
AsiGI ACCGGT 1 cut(s) 623
AsuHPI GGTGA 4 cut(s) 185, 230, 778, 885
AsuNHI GCTAGC 1 cut(s) 436
BbrPI CACGTG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 136, 427, 515, 765
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 3 cut(s) 127, 304, 451
BciVI GTATCC 2 cut(s) 414, 787
BcoDI GTCTC 3 cut(s) 228, 400, 453
BfaI CTAG 4 cut(s) 153, 284, 437, 918
BfuI GTATCC 2 cut(s) 414, 787
BglII AGATCT 2 cut(s) 173, 188
BisI GCNGC 5 cut(s) 150, 276, 441, 504, 779
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 5 cut(s) 151, 277, 442, 505, 780
Bme1390I CCNGG 3 cut(s) 127, 304, 451
BmrFI CCNGG 3 cut(s) 127, 304, 451
BmsI GCATC 1 cut(s) 585
BmtI GCTAGC 1 cut(s) 440
BoxI GACNNNNGTC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 2 cut(s) 158, 252
Bpu1102I GCTNAGC 1 cut(s) 338
BsaAI YACGTR 2 cut(s) 417, 566
BsaBI GATNNNNATC 2 cut(s) 575, 910
BsaHI GRCGYC 2 cut(s) 466, 834
BsaJI CCNNGG 2 cut(s) 126, 369
BsaWI WCCGGW 1 cut(s) 623
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 499, 902
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 3 cut(s) 349, 467, 844
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 2 cut(s) 575, 910
BseBI CCWGG 3 cut(s) 127, 304, 451
BseDI CCNNGG 2 cut(s) 126, 369
BseGI GGATG 2 cut(s) 136, 397
BseJI GATNNNNATC 2 cut(s) 575, 910
BseLI CCNNNNNNNGG 3 cut(s) 110, 499, 902
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 5 cut(s) 174, 329, 522, 569, 757
BseNI ACTGG 3 cut(s) 349, 467, 844
BseXI GCAGC 4 cut(s) 136, 427, 515, 765
BseYI CCCAGC 1 cut(s) 880
BsgI GTGCAG 1 cut(s) 713
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 3 cut(s) 449, 587, 620
BshTI ACCGGT 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 1 cut(s) 624
BslFI GGGAC 2 cut(s) 337, 453
BslI CCNNNNNNNGG 3 cut(s) 110, 499, 902
BsmAI GTCTC 3 cut(s) 228, 400, 453
BsmFI GGGAC 2 cut(s) 337, 453
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 3 cut(s) 449, 587, 620
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 5 cut(s) 133, 173, 188, 905, 911
Bsp1720I GCTNAGC 1 cut(s) 338
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 3 cut(s) 275, 493, 650
BspANI GGCC 3 cut(s) 449, 587, 620
BspCNI CTCAG 5 cut(s) 175, 330, 523, 568, 756
BspFNI CGCG 1 cut(s) 546
BspHI TCATGA 1 cut(s) 430
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 2 cut(s) 913, 919
BsrBI CCGCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 3 cut(s) 349, 467, 844
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 126, 369
BssMI GATC 5 cut(s) 133, 173, 188, 905, 911
BssNI GRCGYC 2 cut(s) 466, 834
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 3 cut(s) 127, 304, 451
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 78, 576
BstACI GRCGYC 2 cut(s) 466, 834
BstBAI YACGTR 2 cut(s) 417, 566
BstC8I GCNNGC 2 cut(s) 438, 548
BstDEI CTNAG 7 cut(s) 37, 183, 338, 531, 555, 743, 866
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 136, 397
BstFNI CGCG 1 cut(s) 546
BstKTI GATC 5 cut(s) 136, 176, 191, 908, 914
BstMAI GTCTC 3 cut(s) 228, 400, 453
BstMBI GATC 5 cut(s) 133, 173, 188, 905, 911
BstMWI GCNNNNNNNGC 4 cut(s) 446, 556, 691, 862
BstNI CCWGG 3 cut(s) 127, 304, 451
BstPAI GACNNNNGTC 1 cut(s) 465
BstSCI CCNGG 3 cut(s) 125, 302, 449
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 4 cut(s) 136, 427, 515, 765
BstV2I GAAGAC 1 cut(s) 58
BstX2I RGATCY 2 cut(s) 173, 188
BstYI RGATCY 2 cut(s) 173, 188
BsuI GTATCC 2 cut(s) 414, 787
BsuRI GGCC 3 cut(s) 449, 587, 620
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 2 cut(s) 136, 397
Cac8I GCNNGC 2 cut(s) 438, 548
CaiI CAGNNNCTG 1 cut(s) 700
CciI TCATGA 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 623
CseI GACGC 2 cut(s) 455, 842
Csp6I GTAC 2 cut(s) 241, 634
CspAI ACCGGT 1 cut(s) 623
CviAII CATG 4 cut(s) 179, 370, 431, 671
CviQI GTAC 2 cut(s) 241, 634
DdeI CTNAG 7 cut(s) 37, 183, 338, 531, 555, 743, 866
DpnI GATC 5 cut(s) 135, 175, 190, 907, 913
DpnII GATC 5 cut(s) 133, 173, 188, 905, 911
Eam1104I CTCTTC 2 cut(s) 78, 576
EarI CTCTTC 2 cut(s) 78, 576
Eco130I CCWWGG 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 920
Eco72I CACGTG 1 cut(s) 417
EcoRII CCWGG 3 cut(s) 125, 302, 449
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 4 cut(s) 182, 373, 434, 674
FaqI GGGAC 2 cut(s) 337, 453
FatI CATG 4 cut(s) 178, 369, 430, 670
FauI CCCGC 1 cut(s) 657
Fnu4HI GCNGC 5 cut(s) 150, 276, 441, 504, 779
FokI GGATG 2 cut(s) 143, 404
Fsp4HI GCNGC 5 cut(s) 150, 276, 441, 504, 779
FspBI CTAG 4 cut(s) 153, 284, 437, 918
GluI GCNGC 5 cut(s) 150, 276, 441, 504, 779
GsaI CCCAGC 1 cut(s) 884
GsuI CTGGAG 2 cut(s) 158, 252
HaeIII GGCC 3 cut(s) 449, 587, 620
HapII CCGG 1 cut(s) 624
HgaI GACGC 2 cut(s) 455, 842
Hin1I GRCGYC 2 cut(s) 466, 834
Hin1II CATG 4 cut(s) 182, 373, 434, 674
HinfI GANTC 5 cut(s) 203, 533, 741, 784, 826
HpaII CCGG 1 cut(s) 624
HphI GGTGA 4 cut(s) 185, 230, 778, 885
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 2 cut(s) 532, 900
Hpy188III TCNNGA 6 cut(s) 137, 231, 431, 482, 830, 909
Hpy8I GTNNAC 1 cut(s) 542
HpyAV CCTTC 3 cut(s) 529, 895, 900
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 3 cut(s) 76, 416, 565
HpyCH4V TGCA 6 cut(s) 73, 608, 657, 670, 694, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 556, 691, 862
HpyF3I CTNAG 7 cut(s) 37, 183, 338, 531, 555, 743, 866
HpySE526I ACGT 3 cut(s) 76, 416, 565
Hsp92I GRCGYC 2 cut(s) 466, 834
Hsp92II CATG 4 cut(s) 182, 373, 434, 674
Kzo9I GATC 5 cut(s) 133, 173, 188, 905, 911
LmnI GCTCC 2 cut(s) 697, 760
Lsp1109I GCAGC 4 cut(s) 136, 427, 515, 765
LweI GCATC 1 cut(s) 585
MaeI CTAG 4 cut(s) 153, 284, 437, 918
MaeII ACGT 3 cut(s) 76, 416, 565
MaeIII GTNAC 1 cut(s) 218
MalI GATC 5 cut(s) 135, 175, 190, 907, 913
MbiI CCGCTC 1 cut(s) 652
MboI GATC 5 cut(s) 133, 173, 188, 905, 911
MboII GAAGA 9 cut(s) 58, 95, 110, 128, 341, 593, 686, 784, 871
MflI RGATCY 2 cut(s) 173, 188
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 3 cut(s) 54, 364, 612
MluI ACGCGT 1 cut(s) 544
MlyI GAGTC 2 cut(s) 542, 735
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 9 cut(s) 246, 413, 438, 484, 526, 577, 592, 647, 906
MseI TTAA 2 cut(s) 53, 386
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 3 cut(s) 127, 304, 451
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 3 cut(s) 127, 304, 451
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 446, 556, 691, 862
NcoI CCATGG 1 cut(s) 369
NdeII GATC 5 cut(s) 133, 173, 188, 905, 911
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 4 cut(s) 182, 373, 434, 674
NmeAIII GCCGAG 1 cut(s) 826
NmuCI GTSAC 1 cut(s) 218
PagI TCATGA 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 203, 784, 826
PflFI GACNNNGTC 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 623
PkrI GCNGC 5 cut(s) 151, 277, 442, 505, 780
PleI GAGTC 2 cut(s) 541, 735
PmaCI CACGTG 1 cut(s) 417
PmlI CACGTG 1 cut(s) 417
PpsI GAGTC 2 cut(s) 541, 735
Ppu21I YACGTR 2 cut(s) 417, 566
PshAI GACNNNNGTC 1 cut(s) 465
Psp6I CCWGG 3 cut(s) 125, 302, 449
PspCI CACGTG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 3 cut(s) 125, 302, 449
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 2 cut(s) 173, 188
PsyI GACNNNGTC 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 2 cut(s) 242, 635
RsaNI GTAC 2 cut(s) 241, 634
SaqAI TTAA 2 cut(s) 53, 386
SatI GCNGC 5 cut(s) 150, 276, 441, 504, 779
Sau3AI GATC 5 cut(s) 133, 173, 188, 905, 911
SchI GAGTC 2 cut(s) 542, 735
ScrFI CCNGG 3 cut(s) 127, 304, 451
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 1 cut(s) 585
SgrAI CRCCGGYG 1 cut(s) 623
Sse9I AATT 3 cut(s) 54, 364, 612
SsiI CCGC 3 cut(s) 275, 493, 650
SspMI CTAG 4 cut(s) 153, 284, 437, 918
StyD4I CCNGG 3 cut(s) 125, 302, 449
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 3 cut(s) 79, 419, 568
TaqI TCGA 3 cut(s) 315, 536, 579
TasI AATT 3 cut(s) 54, 364, 612
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 3 cut(s) 203, 784, 826
Tru1I TTAA 2 cut(s) 53, 386
Tru9I TTAA 2 cut(s) 53, 386
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 4 cut(s) 149, 440, 503, 778
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 333, 687, 785
TspGWI ACGGA 1 cut(s) 806
Tth111I GACNNNGTC 1 cut(s) 488
Van91I CCANNNNNTGG 1 cut(s) 110
XapI RAATTY 1 cut(s) 612
XspI CTAG 4 cut(s) 153, 284, 437, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.