Prupe.3G088600_v2.0.a1

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012547
Physical Location & Seq
Forward (+)
6583901 .. 6586449
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G088600.1

Sequence Viewer

Length: 900 bp
ATGAAGGGGATTTCATCTCAATCCTCCATGAACTACTCTAATGAAGATGACTACGAACTGCAAGAAGAAAATGAAGGATTGTTAAGGAGAGACATAGGAGAAGGTGATTACGCAATTGACGACAGAGCAGAGAAGTTTCAGTGCATGAGCCTTCACAAGCGAGACACCACAAAACGAGGTGAAGAGCTATCTTTTCAGAAGAATGGTCTGTGGAGGCAAGAACAGAAGGGCAGAGTTGCAAGGCTAGAGAATTGGCTAAAGGTAAGGTGGGAACTTGAGGAGATAATTGAAGAACAACTGAACAGGTTCCATGCCCACTACAACTTGGATATGGTCCCAACCCGGCTGAAGGGCGTTGCCCAAATCCTCATGCCCAGTTGGACTCCGCCTGACGAGCTGGCCTCCATAGCTTGGCTTGGTGATTGGCGGCCCTCTGCCATTCTGGAGCTCGTGCGTGGCTTGTCCCTCTCCTCCTCCTCCTCCTCCTCAGCATCATCATCATCCTCTTCTTCAAACTCTATTGGCACCGAACAGCTCTTATCACAGCTCATTTATGAGATTAGGATTGAAGAGGCAATACTTGATGAGGAAATGGCCGAAATTCAATCTACATGTATTCTCTACCTTCCATTTGCTCCAACCAACATCCAATCAGGTGGAGCTGCCCTGGCTTGTGTTCAGTCTGAGTTCAAGAAGATTGAAAGGGTGATCACGAGAGCTCAACAACTAAGGTTCAAGGCACTGGAATTGGTGTTGAAGAAGGTACTGAGTGAAACCGATGCAGCAGAGTTCCTAGTGGCATTTGAGGGAATTCAAGACGCAATTCACCAGTTTGCAACAAACCAGAGGTTCCAAAAGGGTCCAGTCACGTTGCCTGTCAAGGCCTTGGGGTCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

300

Amino Acids

33.75

Weight (kDa)

5.05

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15320 AT1G15320
fragaria_vesca FvH4_6g29541
malus_domestica MD17G1213300.v1.1
prunus_persica Prupe.3G088600_v2.0.a1 Prupe.3G088600_v2.0.a1
pyrus_communis pycom17g21820
rosa_chinensis RchiOBHm_Chr2g0135091
rosa_laevigata RLG00000019441
rosa_multiflora Rmu_co8282347.1_g000001 Rmu_sc0001385.1_g000014 Rmu_sc0003543.1_g000003
rosa_roxburghii Rroxscaffold_2G00109490
rosa_rugosa Rorug02G0322700
rosa_samantha Rh2AG371900 Rh2BG379600 Rh2CG358700 Rh2DG396200
rosa_wichuraiana Rw0G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 524
AccB7I CCANNNNNTGG 1 cut(s) 411
AciI CCGC 2 cut(s) 386, 427
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 2 cut(s) 600, 810
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 1 cut(s) 765
AfiI CCNNNNNNNGG 2 cut(s) 349, 411
AflIII ACRYGT 1 cut(s) 611
AgsI TTSAA 9 cut(s) 290, 513, 569, 605, 691, 701, 736, 757, 815
AjnI CCWGG 1 cut(s) 666
AluBI AGCT 9 cut(s) 187, 397, 410, 448, 535, 547, 662, 719, 897
AluI AGCT 9 cut(s) 187, 397, 410, 448, 535, 547, 662, 719, 897
Alw21I GWGCWC 2 cut(s) 450, 721
Alw26I GTCTC 2 cut(s) 84, 156
AoxI GGCC 4 cut(s) 399, 428, 594, 882
ApeKI GCWGC 2 cut(s) 662, 782
ApoI RAATTY 2 cut(s) 600, 810
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 334, 429, 860
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 5 cut(s) 116, 191, 431, 718, 818
AvaII GGWCC 2 cut(s) 334, 860
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 2 cut(s) 450, 721
BarI GAAGNNNNNNTAC 2 cut(s) 561, 593
BauI CACGAG 2 cut(s) 449, 712
Bbv12I GWGCWC 2 cut(s) 450, 721
BbvCI CCTCAGC 1 cut(s) 487
BbvI GCAGC 2 cut(s) 649, 794
BciT130I CCWGG 1 cut(s) 668
BclI TGATCA 1 cut(s) 708
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 84, 156
BfaI CTAG 3 cut(s) 245, 794, 894
BisI GCNGC 3 cut(s) 428, 663, 783
BlsI GCNGC 3 cut(s) 429, 664, 784
Bme1390I CCNGG 2 cut(s) 343, 668
Bme18I GGWCC 2 cut(s) 334, 860
BmgT120I GGNCC 3 cut(s) 334, 429, 860
BmiI GGNNCC 5 cut(s) 308, 336, 526, 851, 861
BmrFI CCNGG 2 cut(s) 343, 668
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 500, 769
BmuI ACTGGG 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 666, 885
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 411
Bse1I ACTGG 4 cut(s) 375, 747, 829, 863
BseBI CCWGG 1 cut(s) 668
BseDI CCNNGG 2 cut(s) 666, 885
BseGI GGATG 2 cut(s) 500, 645
BseLI CCNNNNNNNGG 2 cut(s) 349, 411
BseMII CTCAG 3 cut(s) 501, 675, 758
BseNI ACTGG 4 cut(s) 375, 747, 829, 863
BseRI GAGGAG 7 cut(s) 293, 460, 463, 466, 469, 472, 475
BseXI GCAGC 2 cut(s) 649, 794
BshFI GGCC 4 cut(s) 401, 430, 596, 884
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 2 cut(s) 450, 721
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 2 cut(s) 320, 448
BslI CCNNNNNNNGG 2 cut(s) 349, 411
BsmAI GTCTC 2 cut(s) 84, 156
BsmFI GGGAC 2 cut(s) 320, 448
BsnI GGCC 4 cut(s) 401, 430, 596, 884
Bsp1286I GDGCHC 2 cut(s) 450, 721
Bsp143I GATC 1 cut(s) 708
BspACI CCGC 2 cut(s) 386, 427
BspANI GGCC 4 cut(s) 401, 430, 596, 884
BspCNI CTCAG 3 cut(s) 500, 676, 759
BspLI GGNNCC 5 cut(s) 308, 336, 526, 851, 861
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 524
BsrI ACTGG 4 cut(s) 375, 747, 829, 863
BssECI CCNNGG 2 cut(s) 666, 885
BssMI GATC 1 cut(s) 708
BssSI CACGAG 2 cut(s) 449, 712
BssT1I CCWWGG 1 cut(s) 885
Bst2BI CACGAG 2 cut(s) 449, 712
Bst2UI CCWGG 1 cut(s) 668
Bst6I CTCTTC 3 cut(s) 177, 511, 564
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 4 cut(s) 487, 684, 728, 767
BstF5I GGATG 2 cut(s) 500, 645
BstKTI GATC 1 cut(s) 711
BstMAI GTCTC 2 cut(s) 84, 156
BstMBI GATC 1 cut(s) 708
BstMWI GCNNNNNNNGC 3 cut(s) 394, 407, 668
BstNI CCWGG 1 cut(s) 668
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 2 cut(s) 341, 666
BstV1I GCAGC 2 cut(s) 649, 794
BstXI CCANNNNNNTGG 1 cut(s) 656
BsuRI GGCC 4 cut(s) 401, 430, 596, 884
BtsCI GGATG 2 cut(s) 500, 645
BtsIMutI CAGTG 2 cut(s) 146, 740
Cac8I GCNNGC 1 cut(s) 399
Cfr13I GGNCC 3 cut(s) 334, 429, 860
CseI GACGC 1 cut(s) 827
Csp6I GTAC 1 cut(s) 764
CviAII CATG 5 cut(s) 28, 145, 311, 370, 612
CviQI GTAC 1 cut(s) 764
DdeI CTNAG 4 cut(s) 487, 684, 728, 767
DpnI GATC 1 cut(s) 710
DpnII GATC 1 cut(s) 708
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 3 cut(s) 177, 511, 564
EarI CTCTTC 3 cut(s) 177, 511, 564
EciI GGCGGA 1 cut(s) 375
Ecl136II GAGCTC 2 cut(s) 448, 719
Eco130I CCWWGG 1 cut(s) 885
Eco147I AGGCCT 1 cut(s) 884
Eco24I GRGCYC 2 cut(s) 450, 721
Eco47I GGWCC 2 cut(s) 334, 860
Eco53kI GAGCTC 2 cut(s) 448, 719
Eco57I CTGAAG 1 cut(s) 368
EcoICRI GAGCTC 2 cut(s) 448, 719
EcoRI GAATTC 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 1 cut(s) 885
EcoT38I GRGCYC 2 cut(s) 450, 721
ErhI CCWWGG 1 cut(s) 885
FaeI CATG 5 cut(s) 31, 148, 314, 373, 615
FaiI YATR 9 cut(s) 29, 95, 146, 312, 332, 371, 407, 555, 613
FaqI GGGAC 2 cut(s) 320, 448
FatI CATG 5 cut(s) 27, 144, 310, 369, 611
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 3 cut(s) 428, 663, 783
FokI GGATG 2 cut(s) 487, 632
FriOI GRGCYC 2 cut(s) 450, 721
Fsp4HI GCNGC 3 cut(s) 428, 663, 783
FspBI CTAG 3 cut(s) 245, 794, 894
GluI GCNGC 3 cut(s) 428, 663, 783
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 4 cut(s) 401, 430, 596, 884
HapII CCGG 1 cut(s) 343
HgaI GACGC 1 cut(s) 827
Hin1II CATG 5 cut(s) 31, 148, 314, 373, 615
HinfI GANTC 1 cut(s) 382
HpaII CCGG 1 cut(s) 343
HphI GGTGA 5 cut(s) 116, 191, 431, 718, 818
Hpy188I TCNGA 2 cut(s) 198, 685
Hpy188III TCNNGA 4 cut(s) 443, 691, 712, 815
HpyAV CCTTC 7 cut(s) 68, 95, 161, 220, 343, 635, 754
HpyCH4IV ACGT 1 cut(s) 869
HpyCH4V TGCA 5 cut(s) 61, 144, 239, 782, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 407, 668
HpyF3I CTNAG 4 cut(s) 487, 684, 728, 767
HpySE526I ACGT 1 cut(s) 869
Hsp92II CATG 5 cut(s) 31, 148, 314, 373, 615
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 1 cut(s) 708
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 3 cut(s) 445, 640, 659
Lsp1109I GCAGC 2 cut(s) 649, 794
LweI GCATC 2 cut(s) 500, 769
MaeI CTAG 3 cut(s) 245, 794, 894
MaeII ACGT 1 cut(s) 869
MaeIII GTNAC 1 cut(s) 865
MalI GATC 1 cut(s) 710
MboI GATC 1 cut(s) 708
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 450, 721
MluCI AATT 7 cut(s) 114, 250, 285, 600, 746, 810, 822
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 2 cut(s) 359, 662
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 1 cut(s) 83
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 343, 668
MunI CAATTG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 668
MwoI GCNNNNNNNGC 3 cut(s) 394, 407, 668
NciI CCSGG 1 cut(s) 343
NdeII GATC 1 cut(s) 708
NlaIII CATG 5 cut(s) 31, 148, 314, 373, 615
NlaIV GGNNCC 5 cut(s) 308, 336, 526, 851, 861
NmuCI GTSAC 1 cut(s) 865
NspI RCATGY 1 cut(s) 615
PceI AGGCCT 1 cut(s) 884
PciI ACATGT 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 411
PkrI GCNGC 3 cut(s) 429, 664, 784
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PscI ACATGT 1 cut(s) 611
Psp124BI GAGCTC 2 cut(s) 450, 721
Psp6I CCWGG 1 cut(s) 666
PspGI CCWGG 1 cut(s) 666
PspN4I GGNNCC 5 cut(s) 308, 336, 526, 851, 861
PspPI GGNCC 3 cut(s) 334, 429, 860
RsaI GTAC 1 cut(s) 765
RsaNI GTAC 1 cut(s) 764
SacI GAGCTC 2 cut(s) 450, 721
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 3 cut(s) 428, 663, 783
Sau3AI GATC 1 cut(s) 708
Sau96I GGNCC 3 cut(s) 334, 429, 860
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 343, 668
SduI GDGCHC 2 cut(s) 450, 721
SfaNI GCATC 2 cut(s) 500, 769
SinI GGWCC 2 cut(s) 334, 860
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 7 cut(s) 114, 250, 285, 600, 746, 810, 822
SseBI AGGCCT 1 cut(s) 884
SsiI CCGC 2 cut(s) 386, 427
SspMI CTAG 3 cut(s) 245, 794, 894
SstI GAGCTC 2 cut(s) 450, 721
StuI AGGCCT 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 341, 666
StyI CCWWGG 1 cut(s) 885
TaiI ACGT 1 cut(s) 872
TasI AATT 7 cut(s) 114, 250, 285, 600, 746, 810, 822
TauI GCSGC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 2 cut(s) 146, 747
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 2 cut(s) 662, 782
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 4 cut(s) 17, 44, 57, 87
TspRI CASTG 2 cut(s) 146, 747
Van91I CCANNNNNTGG 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 334, 860
XapI RAATTY 2 cut(s) 600, 810
XceI RCATGY 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 3 cut(s) 245, 794, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.