FvH4_6g29541

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012547
Physical Location & Seq
Reverse (-)
22809505 .. 22811226
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29541.t1

Sequence Viewer

Length: 858 bp
ATGAAGGGGACGACGCCATCTCAGTCCGCCATGAAATACCCAGATGAAGATAATGAATGTGAAGTGAAAGAAGGAAATGGGGGAGTGTCGGTTGAAGGTGGTTTTGCAGTAGAAGGAAAGGTTCAGTCTCAGTGCATCAGCCTCTACAAGCGAGACCTCACAAAACGAGGTGAAGAGCTCACTTTTGAGAAGAATGGCGTGTGGAGGCAAGAGCAGAAGGGCAGAACTGCAAGGCTGGAGAAACAGCTCAGGGTAAGGTGGGAACTTGATGAGATAATTGAAGAACAAGTGAACAGGTTTCATGCCCACTACAACATGGATATGGTCCCAAACCGCCTCAAGGACATTTCCCAACTTCTCATGCCCTGTTGGACTCCGCCTGATGAGCTTGCCTCCATTGGTTGGTTAGGTGATTGGCGCCCCTCTGCCATTTTGGACCTCGTGCGTGGCTTGTCTGCTTCCTGTTTCCCAATCTCTGGTAGCACGGAACACCTCTTATTGCAGCTCATTCATGAGATTCGGATTGAAGAGGCAATACTTGATGAGGAGATGGCCGAAATCCAGTCCAAGTGTATCCTATACCTTCCATTTGCTCCAATCAACATTCAATCAGGTGGATCTGCCTTGGCTTGTGTTCACTCCGAGTTCAAGAAGATTGAAAGAGTGATCACAAAAGCTCAACAACTCAGGTTCAAGGCACTGGAATTGGTGTTGAAGAAGATACTTAATGAATTTGACGCAGCAGAGTACTTGGTGGCATTTGAGGGTATACAAGATGCTATTCACCAGTTTGCAGCAAACCAGAGGATCCAAAAGGGTCCAGTTGCAATGCCTGCCAAGGCTTTGGGGTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

286

Amino Acids

32.09

Weight (kDa)

5.53

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 85 - 149 7.8e-12 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15320 AT1G15320
fragaria_vesca FvH4_6g29541
malus_domestica MD17G1213300.v1.1
prunus_persica Prupe.3G088600_v2.0.a1 Prupe.3G088600_v2.0.a1
pyrus_communis pycom17g21820
rosa_chinensis RchiOBHm_Chr2g0135091
rosa_laevigata RLG00000019441
rosa_multiflora Rmu_co8282347.1_g000001 Rmu_sc0001385.1_g000014 Rmu_sc0003543.1_g000003
rosa_roxburghii Rroxscaffold_2G00109490
rosa_rugosa Rorug02G0322700
rosa_samantha Rh2AG371900 Rh2BG379600 Rh2CG358700 Rh2DG396200
rosa_wichuraiana Rw0G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 417
AccB7I CCANNNNNTGG 2 cut(s) 402, 476
AccI GTMKAC 1 cut(s) 769
AciI CCGC 3 cut(s) 27, 334, 377
AclWI GGATC 3 cut(s) 625, 802, 815
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 1 cut(s) 731
AcyI GRCGYC 2 cut(s) 14, 418
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 3 cut(s) 340, 402, 476
AgsI TTSAA 8 cut(s) 95, 281, 527, 608, 649, 659, 694, 715
AluBI AGCT 5 cut(s) 178, 247, 388, 505, 677
AluI AGCT 5 cut(s) 178, 247, 388, 505, 677
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 132, 147
AlwI GGATC 3 cut(s) 625, 802, 815
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 3 cut(s) 502, 740, 794
ApoI RAATTY 1 cut(s) 731
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 325, 436, 818
AsuHPI GGTGA 3 cut(s) 182, 422, 776
AvaII GGWCC 3 cut(s) 325, 436, 818
BamHI GGATCC 1 cut(s) 807
BanI GGYRCC 1 cut(s) 417
BanII GRGCYC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 519, 551
BauI CACGAG 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 514, 752, 806
BccI CCATC 2 cut(s) 25, 544
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 1 cut(s) 666
BcoDI GTCTC 2 cut(s) 132, 147
BfoI RGCGCY 1 cut(s) 421
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 3 cut(s) 503, 741, 795
BlsI GCNGC 3 cut(s) 504, 742, 796
BmcAI AGTACT 1 cut(s) 749
Bme18I GGWCC 3 cut(s) 325, 436, 818
BmgT120I GGNCC 3 cut(s) 325, 436, 818
BmiI GGNNCC 4 cut(s) 327, 419, 809, 819
BmsI GCATC 2 cut(s) 144, 766
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 2 cut(s) 14, 418
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 624, 837
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 402, 476
Bse1I ACTGG 4 cut(s) 562, 705, 787, 821
Bse3DI GCAATG 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 624, 837
BseLI CCNNNNNNNGG 3 cut(s) 340, 402, 476
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 4 cut(s) 35, 143, 262, 700
BseNI ACTGG 4 cut(s) 562, 705, 787, 821
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 3 cut(s) 514, 752, 806
BshFI GGCC 1 cut(s) 554
BshNI GGYRCC 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 180
BslFI GGGAC 2 cut(s) 22, 311
BslI CCNNNNNNNGG 3 cut(s) 340, 402, 476
BsmAI GTCTC 2 cut(s) 132, 147
BsmFI GGGAC 2 cut(s) 22, 311
BsnI GGCC 1 cut(s) 554
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 617, 666, 807
BspACI CCGC 3 cut(s) 27, 334, 377
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 4 cut(s) 34, 142, 261, 699
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 4 cut(s) 327, 419, 809, 819
BspPI GGATC 3 cut(s) 625, 802, 815
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 834
BsrI ACTGG 4 cut(s) 562, 705, 787, 821
BssECI CCNNGG 2 cut(s) 624, 837
BssMI GATC 3 cut(s) 617, 666, 807
BssNAI GTATAC 1 cut(s) 770
BssNI GRCGYC 2 cut(s) 14, 418
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 624, 837
Bst1107I GTATAC 1 cut(s) 770
Bst2BI CACGAG 1 cut(s) 440
Bst6I CTCTTC 2 cut(s) 168, 522
BstACI GRCGYC 2 cut(s) 14, 418
BstAPI GCANNNNNTGC 1 cut(s) 833
BstC8I GCNNGC 2 cut(s) 390, 834
BstDEI CTNAG 4 cut(s) 21, 129, 248, 686
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 3 cut(s) 620, 669, 810
BstMAI GTCTC 2 cut(s) 132, 147
BstMBI GATC 3 cut(s) 617, 666, 807
BstMWI GCNNNNNNNGC 2 cut(s) 385, 833
BstV1I GCAGC 3 cut(s) 514, 752, 806
BstX2I RGATCY 2 cut(s) 617, 807
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 2 cut(s) 617, 807
BstZ17I GTATAC 1 cut(s) 770
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 1 cut(s) 554
BtsIMutI CAGTG 2 cut(s) 137, 698
Cac8I GCNNGC 2 cut(s) 390, 834
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 3 cut(s) 325, 436, 818
CseI GACGC 2 cut(s) 22, 746
Csp6I GTAC 1 cut(s) 748
CviAII CATG 5 cut(s) 31, 302, 316, 361, 512
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 4 cut(s) 21, 129, 248, 686
DinI GGCGCC 1 cut(s) 419
DpnI GATC 3 cut(s) 619, 668, 809
DpnII GATC 3 cut(s) 617, 666, 807
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 2 cut(s) 168, 522
EarI CTCTTC 2 cut(s) 168, 522
EciI GGCGGA 2 cut(s) 16, 366
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 624, 837
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 3 cut(s) 325, 436, 818
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 624, 837
EcoT38I GRGCYC 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 419
EheI GGCGCC 1 cut(s) 419
ErhI CCWWGG 2 cut(s) 624, 837
FaeI CATG 5 cut(s) 34, 305, 319, 364, 515
FaiI YATR 8 cut(s) 32, 303, 317, 323, 362, 513, 580, 770
FaqI GGGAC 2 cut(s) 22, 311
FatI CATG 5 cut(s) 30, 301, 315, 360, 511
FbaI TGATCA 1 cut(s) 666
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 3 cut(s) 503, 741, 795
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 503, 741, 795
GlaI GCGC 1 cut(s) 419
GluI GCNGC 3 cut(s) 503, 741, 795
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 421
HaeIII GGCC 1 cut(s) 554
HgaI GACGC 2 cut(s) 22, 746
HhaI GCGC 1 cut(s) 420
Hin1I GRCGYC 2 cut(s) 14, 418
Hin1II CATG 5 cut(s) 34, 305, 319, 364, 515
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 2 cut(s) 373, 517
HphI GGTGA 3 cut(s) 182, 422, 776
Hpy166II GTNNAC 3 cut(s) 292, 637, 770
Hpy188I TCNGA 2 cut(s) 522, 643
Hpy188III TCNNGA 2 cut(s) 512, 649
Hpy8I GTNNAC 3 cut(s) 292, 637, 770
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 5 cut(s) 65, 89, 107, 211, 593
HpyCH4V TGCA 6 cut(s) 107, 135, 230, 502, 794, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 833
HpyF3I CTNAG 4 cut(s) 21, 129, 248, 686
Hsp92I GRCGYC 2 cut(s) 14, 418
Hsp92II CATG 5 cut(s) 34, 305, 319, 364, 515
HspAI GCGC 1 cut(s) 418
KasI GGCGCC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 666
Kzo9I GATC 3 cut(s) 617, 666, 807
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 3 cut(s) 514, 752, 806
LweI GCATC 2 cut(s) 144, 766
MalI GATC 3 cut(s) 619, 668, 809
MboI GATC 3 cut(s) 617, 666, 807
MboII GAAGA 8 cut(s) 59, 185, 202, 293, 539, 664, 727, 730
MflI RGATCY 2 cut(s) 617, 807
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 3 cut(s) 276, 704, 731
Mly113I GGCGCC 1 cut(s) 418
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 350
MseI TTAA 1 cut(s) 726
MslI CAYNNNNRTG 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 385, 833
NarI GGCGCC 1 cut(s) 418
NdeII GATC 3 cut(s) 617, 666, 807
NlaIII CATG 5 cut(s) 34, 305, 319, 364, 515
NlaIV GGNNCC 4 cut(s) 327, 419, 809, 819
PagI TCATGA 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 2 cut(s) 402, 476
PkrI GCNGC 3 cut(s) 504, 742, 796
PleI GAGTC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 367
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 4 cut(s) 327, 419, 809, 819
PspPI GGNCC 3 cut(s) 325, 436, 818
PsuI RGATCY 2 cut(s) 617, 807
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 1 cut(s) 320
SacI GAGCTC 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 3 cut(s) 503, 741, 795
Sau3AI GATC 3 cut(s) 617, 666, 807
Sau96I GGNCC 3 cut(s) 325, 436, 818
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 2 cut(s) 144, 766
SfoI GGCGCC 1 cut(s) 419
SinI GGWCC 3 cut(s) 325, 436, 818
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 276, 704, 731
SsiI CCGC 3 cut(s) 27, 334, 377
SspDI GGCGCC 1 cut(s) 417
SstI GAGCTC 1 cut(s) 180
StyI CCWWGG 2 cut(s) 624, 837
TasI AATT 3 cut(s) 276, 704, 731
TatI WGTACW 1 cut(s) 747
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 2 cut(s) 137, 705
TseI GCWGC 3 cut(s) 502, 740, 794
TspDTI ATGAA 7 cut(s) 17, 47, 60, 69, 290, 500, 744
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 2 cut(s) 137, 705
Van91I CCANNNNNTGG 2 cut(s) 402, 476
VpaK11BI GGWCC 3 cut(s) 325, 436, 818
XapI RAATTY 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 769
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.