Rroxscaffold_2G00109490

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012547
Physical Location & Seq
Forward (+)
33666106 .. 33668657
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109490.1

Sequence Viewer

Length: 1008 bp
ATGACCCAAGCTCGGAGAAGAAAGAGATTAGAGGGCCCTATGAAGAATATGTCACAGCCAGTCTCGCAGTTCAGAGTTGAGAGAAGTGTGAACGCCATTGACACACAGAGAGAAAATGCTTCAGAAAAAGAAGCAGCAGCGATGAAGGGGATGGTGCCATCTCAGCCCTCCATGAAATACCCAGATGAAGATGATGAACATGAAGTGAAAGAAGGAAATGGGGGGTTGGCAGTAGAAGGTGGTTTTGCAATTGAGGACATTGCTGAAAAGTTTCAGTCTCAGTGCATCAGCCTTTACAAGCGAGACCTCTCAAAACGAGGTGAAGAGCTCACTTTTGAGAAGAATGGCGTGTGGAGGCAAGAGCAGAAGGTCAGAACTGCAAGGCTGGAGAAACAGCTCAGGTTGAGGTGGGAACTTGAGGAGATAATTGAAGAACAAGTGAACAGGTTCCATGCACACTACAACTTGGATATGGTCCCAACCCGTCTCAAAGACATTTCCCAACTCCTCATGCCCAATTGGACTCCACCTGATGAGCTTGCCTCCATAGGTTGGTTCGGTGATTGGCGGCCCTCTGCCATTCTGGAACTCGTGCGTTGCTTGTCTGCTTCCTGCTTTCCAATCTCCGCTAGCACGGACCACCTCTTACTGCAGCTCATTCATGAGATTCGGATCGAAGAGGCAATACTTGATGAGGAGATGGCTGAGATTCAGTCTACATGTATCCTCTACCTTCCGTTTGCTCCAATCAACATTCAATCAGGTGGATCTGCCTTGGCTTGTGTTCACTCTGAGTTCAAGAAGATTGAAAGGGTTATCACAAAAGCTCAGCAACTCAGGTTCAAGGCACTGGAATTGGTTTTGAAGAAGATACTGAATGAAATTGATGCAGCAGAGTTCTTAGTGGCATTTGAGGGAATACAAGATGCTATTCACCAGTTTGCAGCAAGCCAGAGGTTCCAAAAGGGTCCAGTTGCAATGCCTGTCAAGGCTTTGGGGTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

335

Amino Acids

38.09

Weight (kDa)

5.67

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 134 - 199 1.7e-11 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15320 AT1G15320
fragaria_vesca FvH4_6g29541
malus_domestica MD17G1213300.v1.1
prunus_persica Prupe.3G088600_v2.0.a1 Prupe.3G088600_v2.0.a1
pyrus_communis pycom17g21820
rosa_chinensis RchiOBHm_Chr2g0135091
rosa_laevigata RLG00000019441
rosa_multiflora Rmu_co8282347.1_g000001 Rmu_sc0001385.1_g000014 Rmu_sc0003543.1_g000003
rosa_roxburghii Rroxscaffold_2G00109490
rosa_rugosa Rorug02G0322700
rosa_samantha Rh2AG371900 Rh2BG379600 Rh2CG358700 Rh2DG396200
rosa_wichuraiana Rw0G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 552
AccI GTMKAC 1 cut(s) 716
AciI CCGC 2 cut(s) 568, 627
AclWI GGATC 2 cut(s) 680, 775
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 12, 552
AflIII ACRYGT 1 cut(s) 719
AgsI TTSAA 6 cut(s) 431, 758, 799, 809, 844, 865
AluBI AGCT 6 cut(s) 11, 328, 397, 538, 655, 827
AluI AGCT 6 cut(s) 11, 328, 397, 538, 655, 827
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 4 cut(s) 67, 282, 297, 491
AlwI GGATC 2 cut(s) 680, 775
AoxI GGCC 2 cut(s) 34, 569
ApaI GGGCCC 1 cut(s) 38
ApeKI GCWGC 5 cut(s) 134, 137, 652, 890, 944
Asp700I GAANNNNTTC 2 cut(s) 270, 446
AspS9I GGNCC 6 cut(s) 34, 35, 475, 570, 637, 968
AsuHPI GGTGA 3 cut(s) 332, 572, 926
AsuNHI GCTAGC 1 cut(s) 629
AvaII GGWCC 3 cut(s) 475, 637, 968
BaeGI GKGCMC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 2 cut(s) 38, 330
BarI GAAGNNNNNNTAC 2 cut(s) 669, 701
BauI CACGAG 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 5 cut(s) 146, 149, 664, 902, 956
BccI CCATC 3 cut(s) 145, 166, 694
BciVI GTATCC 1 cut(s) 734
BcoDI GTCTC 4 cut(s) 67, 282, 297, 491
BfaI CTAG 1 cut(s) 630
BfmI CTRYAG 1 cut(s) 650
BfuI GTATCC 1 cut(s) 734
BisI GCNGC 6 cut(s) 135, 138, 569, 653, 891, 945
BlpI GCTNAGC 1 cut(s) 828
BlsI GCNGC 6 cut(s) 136, 139, 570, 654, 892, 946
Bme18I GGWCC 3 cut(s) 475, 637, 968
BmgT120I GGNCC 6 cut(s) 34, 35, 475, 570, 637, 968
BmiI GGNNCC 6 cut(s) 36, 156, 449, 477, 959, 969
BmsI GCATC 3 cut(s) 294, 877, 916
BmtI GCTAGC 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpmI CTGGAG 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 398
Bpu1102I GCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 774
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 552
Bse1I ACTGG 4 cut(s) 59, 855, 937, 971
Bse3DI GCAATG 2 cut(s) 258, 984
Bse8I GATNNNNATC 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 774
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 671
BseLI CCNNNNNNNGG 2 cut(s) 12, 552
BseMI GCAATG 2 cut(s) 258, 984
BseMII CTCAG 7 cut(s) 176, 293, 412, 696, 783, 842, 850
BseNI ACTGG 4 cut(s) 59, 855, 937, 971
BseRI GAGGAG 3 cut(s) 434, 497, 710
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 5 cut(s) 146, 149, 664, 902, 956
BshFI GGCC 2 cut(s) 36, 571
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 2 cut(s) 12, 552
BsmAI GTCTC 4 cut(s) 67, 282, 297, 491
BsmBI CGTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 2 cut(s) 36, 571
Bso31I GGTCTC 1 cut(s) 297
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 38, 330
Bsp143I GATC 2 cut(s) 672, 767
Bsp1720I GCTNAGC 1 cut(s) 828
BspACI CCGC 2 cut(s) 568, 627
BspANI GGCC 2 cut(s) 36, 571
BspCNI CTCAG 7 cut(s) 175, 292, 411, 697, 784, 841, 849
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 6 cut(s) 36, 156, 449, 477, 959, 969
BspMAI CTGCAG 1 cut(s) 654
BspOI GCTAGC 1 cut(s) 633
BspPI GGATC 2 cut(s) 680, 775
BspQI GCTCTTC 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 2 cut(s) 258, 984
BsrI ACTGG 4 cut(s) 59, 855, 937, 971
BssECI CCNNGG 1 cut(s) 774
BssMI GATC 2 cut(s) 672, 767
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 1 cut(s) 774
Bst2BI CACGAG 1 cut(s) 590
Bst6I CTCTTC 2 cut(s) 318, 672
BstC8I GCNNGC 3 cut(s) 540, 631, 949
BstDEI CTNAG 8 cut(s) 162, 279, 398, 705, 792, 828, 836, 901
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 2 cut(s) 675, 770
BstMAI GTCTC 4 cut(s) 67, 282, 297, 491
BstMBI GATC 2 cut(s) 672, 767
BstMWI GCNNNNNNNGC 2 cut(s) 64, 163
BstNSI RCATGY 1 cut(s) 723
BstSFI CTRYAG 1 cut(s) 650
BstSLI GKGCMC 1 cut(s) 38
BstV1I GCAGC 5 cut(s) 146, 149, 664, 902, 956
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
BsuI GTATCC 1 cut(s) 734
BsuRI GGCC 2 cut(s) 36, 571
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 287, 848
Cac8I GCNNGC 3 cut(s) 540, 631, 949
CciI TCATGA 1 cut(s) 661
Cfr13I GGNCC 6 cut(s) 34, 35, 475, 570, 637, 968
CviAII CATG 6 cut(s) 172, 200, 452, 511, 662, 720
DdeI CTNAG 8 cut(s) 162, 279, 398, 705, 792, 828, 836, 901
DpnI GATC 2 cut(s) 674, 769
DpnII GATC 2 cut(s) 672, 767
Eam1104I CTCTTC 2 cut(s) 318, 672
EarI CTCTTC 2 cut(s) 318, 672
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 774
Eco24I GRGCYC 2 cut(s) 38, 330
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 3 cut(s) 475, 637, 968
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 2 cut(s) 34, 35
EcoT14I CCWWGG 1 cut(s) 774
EcoT38I GRGCYC 2 cut(s) 38, 330
ErhI CCWWGG 1 cut(s) 774
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 6 cut(s) 175, 203, 455, 514, 665, 723
FaqI GGGAC 1 cut(s) 461
FatI CATG 6 cut(s) 171, 199, 451, 510, 661, 719
FblI GTMKAC 1 cut(s) 716
Fnu4HI GCNGC 6 cut(s) 135, 138, 569, 653, 891, 945
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 2 cut(s) 38, 330
Fsp4HI GCNGC 6 cut(s) 135, 138, 569, 653, 891, 945
FspBI CTAG 1 cut(s) 630
GluI GCNGC 6 cut(s) 135, 138, 569, 653, 891, 945
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 2 cut(s) 36, 571
Hin1II CATG 6 cut(s) 175, 203, 455, 514, 665, 723
HinfI GANTC 3 cut(s) 523, 667, 709
HphI GGTGA 3 cut(s) 332, 572, 926
Hpy166II GTNNAC 4 cut(s) 91, 442, 717, 787
Hpy188I TCNGA 6 cut(s) 15, 74, 124, 374, 672, 793
Hpy188III TCNNGA 3 cut(s) 584, 662, 799
Hpy8I GTNNAC 4 cut(s) 91, 442, 717, 787
HpyAV CCTTC 5 cut(s) 139, 206, 230, 361, 743
HpyCH4V TGCA 8 cut(s) 248, 285, 380, 455, 652, 890, 944, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 163
HpyF3I CTNAG 8 cut(s) 162, 279, 398, 705, 792, 828, 836, 901
Hsp92II CATG 6 cut(s) 175, 203, 455, 514, 665, 723
Kzo9I GATC 2 cut(s) 672, 767
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 748
Lsp1109I GCAGC 5 cut(s) 146, 149, 664, 902, 956
LweI GCATC 3 cut(s) 294, 877, 916
MaeI CTAG 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 51
MalI GATC 2 cut(s) 674, 769
MboI GATC 2 cut(s) 672, 767
MfeI CAATTG 2 cut(s) 249, 517
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 2 cut(s) 38, 330
MluCI AATT 5 cut(s) 249, 426, 517, 854, 882
MlyI GAGTC 1 cut(s) 517
MroXI GAANNNNTTC 2 cut(s) 270, 446
MunI CAATTG 2 cut(s) 249, 517
MwoI GCNNNNNNNGC 2 cut(s) 64, 163
NdeII GATC 2 cut(s) 672, 767
NheI GCTAGC 1 cut(s) 629
NlaIII CATG 6 cut(s) 175, 203, 455, 514, 665, 723
NlaIV GGNNCC 6 cut(s) 36, 156, 449, 477, 959, 969
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 1 cut(s) 723
PagI TCATGA 1 cut(s) 661
PciI ACATGT 1 cut(s) 719
PciSI GCTCTTC 1 cut(s) 318
PdmI GAANNNNTTC 2 cut(s) 270, 446
PfeI GAWTC 2 cut(s) 667, 709
PflMI CCANNNNNTGG 1 cut(s) 552
PkrI GCNGC 6 cut(s) 136, 139, 570, 654, 892, 946
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PscI ACATGT 1 cut(s) 719
Psp124BI GAGCTC 1 cut(s) 330
PspN4I GGNNCC 6 cut(s) 36, 156, 449, 477, 959, 969
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 6 cut(s) 34, 35, 475, 570, 637, 968
PstI CTGCAG 1 cut(s) 654
PsuI RGATCY 1 cut(s) 767
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 318
SatI GCNGC 6 cut(s) 135, 138, 569, 653, 891, 945
Sau3AI GATC 2 cut(s) 672, 767
Sau96I GGNCC 6 cut(s) 34, 35, 475, 570, 637, 968
SchI GAGTC 1 cut(s) 517
SduI GDGCHC 2 cut(s) 38, 330
SfaNI GCATC 3 cut(s) 294, 877, 916
SfcI CTRYAG 1 cut(s) 650
SinI GGWCC 3 cut(s) 475, 637, 968
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 249, 426, 517, 854, 882
SsiI CCGC 2 cut(s) 568, 627
SspMI CTAG 1 cut(s) 630
SstI GAGCTC 1 cut(s) 330
StyI CCWWGG 1 cut(s) 774
TaqI TCGA 1 cut(s) 675
TasI AATT 5 cut(s) 249, 426, 517, 854, 882
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 2 cut(s) 667, 709
TscAI CASTG 2 cut(s) 287, 855
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 5 cut(s) 134, 137, 652, 890, 944
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 8 cut(s) 56, 158, 188, 201, 210, 216, 650, 894
TspGWI ACGGA 2 cut(s) 650, 726
TspRI CASTG 2 cut(s) 287, 855
Van91I CCANNNNNTGG 1 cut(s) 552
VpaK11BI GGWCC 3 cut(s) 475, 637, 968
XceI RCATGY 1 cut(s) 723
XmiI GTMKAC 1 cut(s) 716
XmnI GAANNNNTTC 2 cut(s) 270, 446
XspI CTAG 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.