Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011954

Physical Location & Seq

Genomic Coordinates Reverse (-)

5306027 .. 5309558

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGAGTTCCGTTTCGAGAATCTTCTTGGCGCTCCTTACAGAGGCGGGAACGCAGTCATCACTAAGAATACTCAGCTAATTTCACCGGTTGGTAATCGTGTCTCCGTCACCGACCTAAGTAAGAACCATTCGGTCACTCTTCCGCTCGAAACCTCTACCAACATATGTCGCCTCGCTTCCTCACCCGACGGTACTTTCCTACTCGCCGTCGATGAACAAAACCGATGCCTTTTCATCAACTTGCCTCGGCGGGTAGTTCTTCACAGAATTACCTTCAAGGATAAAGTCGGTGCCTTGAAGTTCAGCCCTAATGGTAAGTTTATCGCTGTTGGAATTGGTAAGTTGGTGGAAATATGGCGATCACCTGGTTTCAGGCGAGCTGTTTTGCCCTTTGAGCGGGTTAGGACTTTTGCTAATTCTGATGATAAAGTTGTCTCCTTGGAGTGGAGCTTGGACTCTGATTATTTGCTTGTTGGCTCAAGGGATTTAGCTGCTAGGTTGTTTTGTGTTAGAAAGTTGAAGGGTGTTTTAAATAAGCCATTTTTGTTTCTGGGTCATAGAGATTCTGTTGTGGGTTGCTTCTTTGGTGTTGATAAAATGACTAACAAGGTCAACAGGGCTTTCACGATTGCAAGGGATGGTTACATTTTTAGTTGGGGCTATACTGAAAAGGATGTCAAAATGGATGAATCAGAAGATGGCCACTCTGAGCCACCGTCACCTGTTACTCCAGATAGGGCTGATGAGGTGATGGTGGAAAATGGTGGTGGTGTTGGTACTGAGCTTAAGAAACGAAAAGAGTATGACGGTAAAGGTCTTGAATCAGATGAAGAAGGAGATGATGATGATGAAGAGTATATGCACAGAGGAAAATGGGTTTTGTTGAGGAAGGATGGGTGTAATCAGGCATCAGCAAAGGTGACCGCTTGCGACTATCATCAGGGACTTGACATGGTTGTGGTGGGGTTCTCAAATGGTGTTTTTGGGCTTTATCAGATGCCAGATTTCATCTGTATCCATCTGCTCTCTATTTCTAGGCAGAAGCTAACAACAGCTGTCTTCAATGAGCGTGGTAATTGGCTGACCTTTGGTTGCGCGAAACTTGGGCAACTGTTAGTCTGGGATTGGCGAACCGAAACCTATATACTGAAGCAACAAGGACACTATTTTGACGTCAACTGTGTCACTTACTCACCGGATTCGCAGCTCTTGGCAACTGGTGCTGATGATAACAAAGTCAAGGTGTGGAACGTTATGTCAGGAACATGTTTCATTACATTCACCGAGCATACCAATGCCGTGACTGCTCTTCATTTTATGGCTGACAACCACTCCCTCTTAAGTGCATCTCTGGACGGCACTGTTCGTGCTTGGGATTTTAAAAGATACAAGAACTATAAGACATACACAACCCCTACACCCCGACAATTTGTTTCCTTAACAGCAGACCCGAGTGGTGACGTCGTCTGTGCTGGGACCCTAGATTCATTCGAGATTTTTGTATGGTCCAAGAAGACTGGGCAAATAAAGGATATTCTGAGTGGGCATGAGGCTCCTGTTCATGGGTTGATGTTTTCTCCCTTAACGCAACTTTTAGCTTCATCCTCATGGGACTATACAGTTCGGTTGTGGGATGTGTTTGCTAGCAAAGGCACCGTGGAAACGTTTCGACACAACCACGATGTTCTAACAGTTGCTTTCCGTCCTGATGGGAAGCAATTAGCCTCGAGTACGCTAGATGGGCAGATCAATTTCTGGGACACCATTGAAGGTGTGTTAATGTACACCATAGAGGGGCGGAGAGATATCGCTGGAGGTCGGGTCATGACTGACCGTCGGTCTGCAGCTAATTCAAGTTCTGGAAAGTGTTTTACAACATTGTGCTATTCCGCTGATGGAGGGTATATTCTAGCCGCAGGAACTAGCAGATATATTTGCATGTATGATATCGCAGATCAGGTTCTTCTGCGCCGGTTTCAGATATCCCATAATCTTTCGTTAGATGGGGTTCTGGACTTCTTGCACTCTAAGAAGATGACAGAAGCAGGACCAATTGATCTGATCGATGATGACAACAGCGATGAAGAAGGTGGCATTGATAAACAGTCGAGAGGGAATCTGGGTTACGATCTGCCTGGATCCAGGCCTAACCGTGGCAGGCCCATTATCCGGACAAAAAGCCTCAGCATTGCCCCAACTGGAAGGAGCTTTGCTGCTGCAACAACAGAAGGAGTCCTCATCTTTTCAATTGACGATACCTTCATCTTTGATCCGACCGATCTAGATATAGATGTTACTCCAGAGGCTGTTGAGGCTGCCATAGAAGAGGATGAAGTTAGCAGAGCACTTGCTCTAAGTATGCGTTTGAACGAAGATAGCCTTATCAAAAAATGCATCTTCGCTGTAGCCCCTGCAGACATAAAAGCTGTTGCCATCTCTGTCCGCCAGAAATACTTAGAAAGGCTTATGGAAGCTTTGGTGGATCTGCTTGAGAACTGTCCTCATCTGGAGTTCATACTTCACTGGTGTCAGGAAATCTGCAAGGCTCACGGAAGCTCCATTCAGCGGAACTACAGAACTCTATTGCCTGCACTGAGATCGTTGCAGAAGGCGATCACCAGAGCCCATCAGGATCTGGCAGATATGTGTTCTTCCAATGAGTACACGCTTCGCTACTTGTGTTCTGTTCCAAACAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000151 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0010119 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034388 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

900

Amino Acids

100.47

Weight (kDa)

5.92

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	34 - 162	6.5e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	35 - 173	9.6e-11	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	42 - 175	6.2e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	93 - 198	1.9e-06	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	289 - 506	3e-17	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	301 - 493	4.6e-24	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	302 - 416	7.9e-07	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	302 - 459	2.1e-22	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	302 - 503	6.6e-21	CDC20/Fizzy WD40 domain
WDR55	PF24796	304 - 587	3.9e-24	WDR55
Beta-prop_WDR5	PF25175	305 - 496	7.8e-27	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	308 - 444	3.6e-15	THOC3 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	326 - 468	8.3e-09	MABP1/WDR62 first WD40 domain
Beta-prop_EML_2	PF23414	346 - 448	4.2e-11	Echinoderm microtubule-associated protein second beta-propeller
EIF3I	PF24805	347 - 429	3.1e-06	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	367 - 586	4.5e-12	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	367 - 464	3.8e-11	WDR36/Utp21 first beta-propeller
WD40_Gbeta	PF25391	372 - 538	5.6e-17	G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd	PF23393	374 - 462	3.4e-07	WDR90/POC16, second beta-propeller
Beta-prop_Aladin	PF25460	381 - 465	2.4e-06	Aladin seven-bladed propeller
Beta-prop_WDR3_2nd	PF25172	381 - 504	1.4e-16	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	382 - 494	1.1e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	384 - 417	4.5e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	386 - 466	6.3e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	386 - 469	6.7e-09	TEP-1 second beta-propeller
EIF3I	PF24805	386 - 482	7.9e-09	EIF3I
Beta-prop_THOC3	PF25174	391 - 598	1.9e-34	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	391 - 470	3.7e-15	WDHD1 first WD40 domain
Beta-prop_WDR75_1st	PF23869	398 - 472	2e-07	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	421 - 459	2.3e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	431 - 600	2e-15	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	439 - 603	2.5e-14	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	444 - 592	2.8e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	455 - 602	1.2e-21	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	479 - 601	7.1e-08	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	479 - 663	8.1e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st	PF24817	479 - 549	1.5e-08	WDHD1 first WD40 domain
EIF3I	PF24805	485 - 660	2.3e-07	EIF3I
Beta-prop_TEP1_2nd	PF25047	488 - 590	1.2e-07	TEP-1 second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	499 - 588	6.1e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR5	PF25175	499 - 665	2e-20	WDR5 beta-propeller domain
WD40_Prp19	PF24814	499 - 667	2.2e-14	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	509 - 597	7.9e-06	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	510 - 545	1.9e-07	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	513 - 580	4e-07	WDR36/Utp21 second beta-propeller domain
Utp12	PF04003	790 - 895	3.2e-24	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15440 AT1G15440
fragaria_vesca	FvH4_6g30400 FvH4_6g30400
malus_domestica	MD09G1221400.v1.1 MD17G1203900.v1.1
prunus_persica	Prupe.3G078900_v2.0.a1
pyrus_communis	pycom1094g00080 pycom17g20750
rosa_chinensis	RchiOBHm_Chr2g0136751
rosa_laevigata	RLG00000019569
rosa_multiflora	Rmu_sc0001299.1_g000021
rosa_roxburghii	Rroxscaffold_2G00108100
rosa_rugosa	Rorug02G0332800
rosa_samantha	Rh2AG383600 Rh2BG390300 Rh2CG370100 Rh2DG406900
rosa_wichuraiana	Rw2G031370

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1176, 1464
AccB1I	GGYRCC	2 cut(s)	290, 1652
AccBSI	CCGCTC	2 cut(s)	145, 397
AccII	CGCG	1 cut(s)	1097
AccIII	TCCGGA	1 cut(s)	2169
AclI	AACGTT	2 cut(s)	1251, 1664
AclWI	GGATC	5 cut(s)	2133, 2146, 2264, 2490, 2640
AcoI	YGGCCR	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	1169
AcyI	GRCGYC	2 cut(s)	1173, 1461
AfaI	GTAC	5 cut(s)	193, 778, 1732, 1784, 2663
AfiI	CCNNNNNNNGG	8 cut(s)	41, 396, 444, 1562, 1794, 2153, 2169, 2565
AflII	CTTAAG	2 cut(s)	785, 1339
AflIII	ACRYGT	1 cut(s)	1265
AgeI	ACCGGT	1 cut(s)	85
AgsI	TTSAA	9 cut(s)	277, 298, 520, 821, 1063, 1769, 1854, 2247, 2368
AhdI	GACNNNNNGTC	2 cut(s)	1833, 1837
AjnI	CCWGG	3 cut(s)	364, 2134, 2141
Alw21I	GWGCWC	1 cut(s)	2347
Alw26I	GTCTC	2 cut(s)	106, 439
AlwI	GGATC	5 cut(s)	2133, 2146, 2264, 2490, 2640
AlwNI	CAGNNNCTG	2 cut(s)	2306, 2635
Ama87I	CYCGRG	2 cut(s)	1450, 1726
Aor13HI	TCCGGA	1 cut(s)	2169
AoxI	GGCC	3 cut(s)	700, 2144, 2159
ApeKI	GCWGC	6 cut(s)	491, 1204, 1844, 2213, 2216, 2315
AsiGI	ACCGGT	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	1665
AspLEI	GCGC	3 cut(s)	32, 1097, 1971
AspS9I	GGNCC	4 cut(s)	1476, 1506, 2048, 2160
AsuNHI	GCTAGC	1 cut(s)	1643
AvaI	CYCGRG	2 cut(s)	1450, 1726
AvaII	GGWCC	3 cut(s)	1476, 1506, 2048
BalI	TGGCCA	1 cut(s)	702
BamHI	GGATCC	1 cut(s)	2138
BanI	GGYRCC	2 cut(s)	290, 1652
BanII	GRGCYC	1 cut(s)	2626
BbsI	GAAGAC	2 cut(s)	1051, 1520
Bbv12I	GWGCWC	1 cut(s)	2347
BbvCI	CCTCAGC	1 cut(s)	2183
BbvI	GCAGC	6 cut(s)	478, 1216, 1856, 2200, 2203, 2302
BceAI	ACGGC	3 cut(s)	191, 1283, 1372
BcgI	CGANNNNNNTGC	2 cut(s)	2580, 2614
BciT130I	CCWGG	3 cut(s)	366, 2136, 2143
BciVI	GTATCC	1 cut(s)	1025
BcoDI	GTCTC	2 cut(s)	106, 439
BfaI	CTAG	8 cut(s)	495, 1035, 1481, 1644, 1736, 1910, 1923, 2282
BfmI	CTRYAG	4 cut(s)	1842, 2403, 2412, 2572
BfoI	RGCGCY	1 cut(s)	33
BfrI	CTTAAG	2 cut(s)	785, 1339
BfuI	GTATCC	1 cut(s)	1025
BisI	GCNGC	7 cut(s)	492, 1205, 1845, 1914, 2214, 2217, 2316
BlsI	GCNGC	7 cut(s)	493, 1206, 1846, 1915, 2215, 2218, 2317
Bme1390I	CCNGG	3 cut(s)	366, 2136, 2143
Bme18I	GGWCC	3 cut(s)	1476, 1506, 2048
BmeRI	GACNNNNNGTC	2 cut(s)	1833, 1837
BmeT110I	CYCGRG	2 cut(s)	1450, 1726
BmgT120I	GGNCC	4 cut(s)	1476, 1506, 2048, 2160
BmiI	GGNNCC	6 cut(s)	292, 1477, 1478, 1554, 1654, 2140
BmrFI	CCNGG	3 cut(s)	366, 2136, 2143
BmrI	ACTGGG	1 cut(s)	1527
BmsI	GCATC	5 cut(s)	215, 917, 987, 1355, 2403
BmtI	GCTAGC	1 cut(s)	1647
BmuI	ACTGGG	1 cut(s)	1527
BpiI	GAAGAC	2 cut(s)	1051, 1520
BpmI	CTGGAG	4 cut(s)	714, 1833, 2283, 2528
Bpu10I	CCTNAGC	1 cut(s)	2183
BpuEI	CTTGAG	2 cut(s)	463, 2510
Bsa29I	ATCGAT	1 cut(s)	2064
BsaHI	GRCGYC	2 cut(s)	1173, 1461
BsaJI	CCNNGG	4 cut(s)	245, 438, 1656, 2152
BsaWI	WCCGGW	3 cut(s)	85, 1195, 2169
BsaXI	ACNNNNNCTCC	6 cut(s)	1316, 1346, 1806, 1836, 2540, 2570
Bsc4I	CCNNNNNNNGG	8 cut(s)	41, 396, 444, 1562, 1794, 2153, 2169, 2565
Bse118I	RCCGGY	2 cut(s)	85, 1971
Bse1I	ACTGG	4 cut(s)	1222, 1522, 2203, 2528
Bse3DI	GCAATG	1 cut(s)	2187
BseAI	TCCGGA	1 cut(s)	2169
BseBI	CCWGG	3 cut(s)	366, 2136, 2143
BseCI	ATCGAT	1 cut(s)	2064
BseDI	CCNNGG	4 cut(s)	245, 438, 1656, 2152
BseGI	GGATG	7 cut(s)	643, 679, 691, 898, 1601, 1639, 2335
BseLI	CCNNNNNNNGG	8 cut(s)	41, 396, 444, 1562, 1794, 2153, 2169, 2565
BseMI	GCAATG	1 cut(s)	2187
BseMII	CTCAG	6 cut(s)	86, 699, 771, 1529, 2197, 2585
BseNI	ACTGG	4 cut(s)	1222, 1522, 2203, 2528
BseXI	GCAGC	6 cut(s)	478, 1216, 1856, 2200, 2203, 2302
BseYI	CCCAGC	1 cut(s)	1472
BsgI	GTGCAG	1 cut(s)	2574
Bsh1236I	CGCG	1 cut(s)	1097
Bsh1285I	CGRYCG	1 cut(s)	2277
BshFI	GGCC	3 cut(s)	702, 2146, 2161
BshNI	GGYRCC	2 cut(s)	290, 1652
BshTI	ACCGGT	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	2064
BsiEI	CGRYCG	1 cut(s)	2277
BsiHKAI	GWGCWC	1 cut(s)	2347
BsiHKCI	CYCGRG	2 cut(s)	1450, 1726
BsiSI	CCGG	4 cut(s)	86, 1196, 1972, 2170
BslFI	GGGAC	4 cut(s)	957, 1489, 1625, 1772
BslI	CCNNNNNNNGG	8 cut(s)	41, 396, 444, 1562, 1794, 2153, 2169, 2565
BsmAI	GTCTC	2 cut(s)	106, 439
BsmFI	GGGAC	4 cut(s)	957, 1489, 1625, 1772
BsnI	GGCC	3 cut(s)	702, 2146, 2161
BsoBI	CYCGRG	2 cut(s)	1450, 1726
Bsp1286I	GDGCHC	2 cut(s)	2347, 2626
Bsp13I	TCCGGA	1 cut(s)	2169
Bsp1407I	TGTACA	1 cut(s)	1782
BspANI	GGCC	3 cut(s)	702, 2146, 2161
BspCNI	CTCAG	6 cut(s)	85, 700, 772, 1530, 2196, 2586
BspDI	ATCGAT	1 cut(s)	2064
BspEI	TCCGGA	1 cut(s)	2169
BspFNI	CGCG	1 cut(s)	1097
BspHI	TCATGA	1 cut(s)	1824
BspLI	GGNNCC	6 cut(s)	292, 1477, 1478, 1554, 1654, 2140
BspMAI	CTGCAG	2 cut(s)	1846, 2416
BspOI	GCTAGC	1 cut(s)	1647
BspPI	GGATC	5 cut(s)	2133, 2146, 2264, 2490, 2640
BspQI	GCTCTTC	1 cut(s)	1314
BspT107I	GGYRCC	2 cut(s)	290, 1652
BspTI	CTTAAG	2 cut(s)	785, 1339
BsrBI	CCGCTC	2 cut(s)	145, 397
BsrDI	GCAATG	1 cut(s)	2187
BsrFI	RCCGGY	2 cut(s)	85, 1971
BsrGI	TGTACA	1 cut(s)	1782
BsrI	ACTGG	4 cut(s)	1222, 1522, 2203, 2528
BssAI	RCCGGY	2 cut(s)	85, 1971
BssECI	CCNNGG	4 cut(s)	245, 438, 1656, 2152
BssNI	GRCGYC	2 cut(s)	1173, 1461
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	3 cut(s)	366, 2136, 2143
Bst6I	CTCTTC	4 cut(s)	144, 846, 1314, 2319
BstACI	GRCGYC	2 cut(s)	1173, 1461
BstAFI	CTTAAG	2 cut(s)	785, 1339
BstAPI	GCANNNNNTGC	1 cut(s)	1220
BstAUI	TGTACA	1 cut(s)	1782
BstC8I	GCNNGC	5 cut(s)	378, 928, 1645, 2159, 2589
BstDSI	CCRYGG	2 cut(s)	1656, 2152
BstEII	GGTNACC	1 cut(s)	919
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	7 cut(s)	643, 679, 691, 898, 1601, 1639, 2335
BstFNI	CGCG	1 cut(s)	1097
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	3 cut(s)	32, 1097, 1971
BstMAI	GTCTC	2 cut(s)	106, 439
BstMCI	CGRYCG	1 cut(s)	2277
BstMWI	GCNNNNNNNGC	5 cut(s)	394, 1220, 1304, 1741, 2312
BstNI	CCWGG	3 cut(s)	366, 2136, 2143
BstNSI	RCATGY	2 cut(s)	1269, 1942
BstPI	GGTNACC	1 cut(s)	919
BstSCI	CCNGG	3 cut(s)	364, 2134, 2141
BstSFI	CTRYAG	4 cut(s)	1842, 2403, 2412, 2572
BstUI	CGCG	1 cut(s)	1097
BstV1I	GCAGC	6 cut(s)	478, 1216, 1856, 2200, 2203, 2302
BstV2I	GAAGAC	2 cut(s)	1051, 1520
BstX2I	RGATCY	3 cut(s)	2138, 2482, 2632
BstYI	RGATCY	3 cut(s)	2138, 2482, 2632
Bsu15I	ATCGAT	1 cut(s)	2064
BsuI	GTATCC	1 cut(s)	1025
BsuRI	GGCC	3 cut(s)	702, 2146, 2161
BsuTUI	ATCGAT	1 cut(s)	2064
BtgI	CCRYGG	2 cut(s)	1656, 2152
BtgZI	GCGATG	1 cut(s)	2094
BtsCI	GGATG	7 cut(s)	643, 679, 691, 898, 1601, 1639, 2335
BtsIMutI	CAGTG	3 cut(s)	1359, 2521, 2591
Cac8I	GCNNGC	5 cut(s)	378, 928, 1645, 2159, 2589
CaiI	CAGNNNCTG	2 cut(s)	2306, 2635
CciI	TCATGA	1 cut(s)	1824
CfoI	GCGC	3 cut(s)	32, 1097, 1971
Cfr10I	RCCGGY	2 cut(s)	85, 1971
Cfr13I	GGNCC	4 cut(s)	1476, 1506, 2048, 2160
ClaI	ATCGAT	1 cut(s)	2064
CsiI	ACCWGGT	1 cut(s)	364
Csp6I	GTAC	5 cut(s)	192, 777, 1731, 1783, 2662
CspAI	ACCGGT	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	1051, 1086
CviAII	CATG	7 cut(s)	952, 1266, 1547, 1562, 1608, 1825, 1939
CviQI	GTAC	5 cut(s)	192, 777, 1731, 1783, 2662
DraI	TTTAAA	2 cut(s)	531, 1381
DriI	GACNNNNNGTC	2 cut(s)	1833, 1837
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	4 cut(s)	144, 846, 1314, 2319
Eam1105I	GACNNNNNGTC	2 cut(s)	1833, 1837
EarI	CTCTTC	4 cut(s)	144, 846, 1314, 2319
EciI	GGCGGA	2 cut(s)	1813, 2432
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	2146
Eco24I	GRGCYC	1 cut(s)	2626
Eco32I	GATATC	3 cut(s)	1807, 1948, 1983
Eco47I	GGWCC	3 cut(s)	1476, 1506, 2048
Eco57I	CTGAAG	1 cut(s)	1169
Eco88I	CYCGRG	2 cut(s)	1450, 1726
Eco91I	GGTNACC	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	1476
EcoO65I	GGTNACC	1 cut(s)	919
EcoRII	CCWGG	3 cut(s)	364, 2134, 2141
EcoRV	GATATC	3 cut(s)	1807, 1948, 1983
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	2396
EcoT38I	GRGCYC	1 cut(s)	2626
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	7 cut(s)	955, 1269, 1550, 1565, 1611, 1828, 1942
FalI	AAGNNNNNCTT	2 cut(s)	2364, 2396
FaqI	GGGAC	4 cut(s)	957, 1489, 1625, 1772
FatI	CATG	7 cut(s)	951, 1265, 1546, 1561, 1607, 1824, 1938
FauI	CCCGC	3 cut(s)	38, 243, 390
FauNDI	CATATG	1 cut(s)	164
Fnu4HI	GCNGC	7 cut(s)	492, 1205, 1845, 1914, 2214, 2217, 2316
FokI	GGATG	7 cut(s)	650, 686, 698, 905, 1588, 1646, 2342
FriOI	GRGCYC	1 cut(s)	2626
Fsp4HI	GCNGC	7 cut(s)	492, 1205, 1845, 1914, 2214, 2217, 2316
FspBI	CTAG	8 cut(s)	495, 1035, 1481, 1644, 1736, 1910, 1923, 2282
GlaI	GCGC	3 cut(s)	31, 1096, 1970
GluI	GCNGC	7 cut(s)	492, 1205, 1845, 1914, 2214, 2217, 2316
GsaI	CCCAGC	1 cut(s)	1476
GsuI	CTGGAG	4 cut(s)	714, 1833, 2283, 2528
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	702, 2146, 2161
HapII	CCGG	4 cut(s)	86, 1196, 1972, 2170
HhaI	GCGC	3 cut(s)	32, 1097, 1971
Hin1I	GRCGYC	2 cut(s)	1173, 1461
Hin1II	CATG	7 cut(s)	955, 1269, 1550, 1565, 1611, 1828, 1942
Hin6I	GCGC	3 cut(s)	30, 1095, 1969
HinP1I	GCGC	3 cut(s)	30, 1095, 1969
HincII	GTYRAC	2 cut(s)	613, 1177
HindII	GTYRAC	2 cut(s)	613, 1177
HindIII	AAGCTT	1 cut(s)	2472
HinfI	GANTC	9 cut(s)	19, 455, 563, 689, 821, 1199, 1484, 2116, 2232
HpaII	CCGG	4 cut(s)	86, 1196, 1972, 2170
Hpy166II	GTNNAC	4 cut(s)	613, 1177, 1785, 2664
Hpy8I	GTNNAC	4 cut(s)	613, 1177, 1785, 2664
Hpy99I	CGWCG	4 cut(s)	191, 212, 1466, 1839
HpyCH4IV	ACGT	4 cut(s)	1173, 1251, 1461, 1664
HpyF10VI	GCNNNNNNNGC	5 cut(s)	394, 1220, 1304, 1741, 2312
HpySE526I	ACGT	4 cut(s)	1173, 1251, 1461, 1664
Hsp92I	GRCGYC	2 cut(s)	1173, 1461
Hsp92II	CATG	7 cut(s)	955, 1269, 1550, 1565, 1611, 1828, 1942
HspAI	GCGC	3 cut(s)	30, 1095, 1969
KflI	GGGWCCC	1 cut(s)	1476
Kpn2I	TCCGGA	1 cut(s)	2169
LguI	GCTCTTC	1 cut(s)	1314
LmnI	GCTCC	5 cut(s)	37, 447, 1558, 2205, 2561
Lsp1109I	GCAGC	6 cut(s)	478, 1216, 1856, 2200, 2203, 2302
LweI	GCATC	5 cut(s)	215, 917, 987, 1355, 2403
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	8 cut(s)	495, 1035, 1481, 1644, 1736, 1910, 1923, 2282
MaeII	ACGT	4 cut(s)	1173, 1251, 1461, 1664
MbiI	CCGCTC	2 cut(s)	145, 397
MfeI	CAATTG	2 cut(s)	2052, 2247
MflI	RGATCY	3 cut(s)	2138, 2482, 2632
MhlI	GDGCHC	2 cut(s)	2347, 2626
MlsI	TGGCCA	1 cut(s)	702
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	2 cut(s)	449, 2241
MmeI	TCCRAC	2 cut(s)	310, 2297
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	1 cut(s)	2396
MroI	TCCGGA	1 cut(s)	2169
MroXI	GAANNNNTTC	1 cut(s)	1665
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	7 cut(s)	530, 786, 1340, 1380, 1439, 1583, 1778
MslI	CAYNNNNRTG	3 cut(s)	956, 1293, 1606
Msp20I	TGGCCA	1 cut(s)	702
MspA1I	CMGCKG	3 cut(s)	1055, 1892, 2566
MspCI	CTTAAG	2 cut(s)	785, 1339
MspI	CCGG	4 cut(s)	86, 1196, 1972, 2170
MspR9I	CCNGG	3 cut(s)	366, 2136, 2143
MunI	CAATTG	2 cut(s)	2052, 2247
MvaI	CCWGG	3 cut(s)	366, 2136, 2143
MvnI	CGCG	1 cut(s)	1097
MwoI	GCNNNNNNNGC	5 cut(s)	394, 1220, 1304, 1741, 2312
NdeI	CATATG	1 cut(s)	164
NheI	GCTAGC	1 cut(s)	1643
NlaIII	CATG	7 cut(s)	955, 1269, 1550, 1565, 1611, 1828, 1942
NlaIV	GGNNCC	6 cut(s)	292, 1477, 1478, 1554, 1654, 2140
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	7 cut(s)	106, 133, 717, 919, 1183, 1300, 1457
NsiI	ATGCAT	1 cut(s)	2396
NspI	RCATGY	2 cut(s)	1269, 1942
PaeR7I	CTCGAG	1 cut(s)	1726
PagI	TCATGA	1 cut(s)	1824
PceI	AGGCCT	1 cut(s)	2146
PciI	ACATGT	1 cut(s)	1265
PciSI	GCTCTTC	1 cut(s)	1314
PdmI	GAANNNNTTC	1 cut(s)	1665
PfeI	GAWTC	7 cut(s)	19, 563, 689, 821, 1199, 1484, 2116
PflFI	GACNNNGTC	1 cut(s)	1463
PinAI	ACCGGT	1 cut(s)	85
PkrI	GCNGC	7 cut(s)	493, 1206, 1846, 1915, 2215, 2218, 2317
PleI	GAGTC	2 cut(s)	449, 2240
PpsI	GAGTC	2 cut(s)	449, 2240
PpuMI	RGGWCCY	1 cut(s)	1476
PscI	ACATGT	1 cut(s)	1265
Psp1406I	AACGTT	2 cut(s)	1251, 1664
Psp5II	RGGWCCY	1 cut(s)	1476
Psp6I	CCWGG	3 cut(s)	364, 2134, 2141
PspEI	GGTNACC	1 cut(s)	919
PspFI	CCCAGC	1 cut(s)	1472
PspGI	CCWGG	3 cut(s)	364, 2134, 2141
PspN4I	GGNNCC	6 cut(s)	292, 1477, 1478, 1554, 1654, 2140
PspPI	GGNCC	4 cut(s)	1476, 1506, 2048, 2160
PspPPI	RGGWCCY	1 cut(s)	1476
PspXI	VCTCGAGB	1 cut(s)	1726
PstI	CTGCAG	2 cut(s)	1846, 2416
PstNI	CAGNNNCTG	2 cut(s)	2306, 2635
PsuI	RGATCY	3 cut(s)	2138, 2482, 2632
PsyI	GACNNNGTC	1 cut(s)	1463
PvuII	CAGCTG	1 cut(s)	1055
RsaI	GTAC	5 cut(s)	193, 778, 1732, 1784, 2663
RsaNI	GTAC	5 cut(s)	192, 777, 1731, 1783, 2662
RseI	CAYNNNNRTG	3 cut(s)	956, 1293, 1606
SapI	GCTCTTC	1 cut(s)	1314
SaqAI	TTAA	7 cut(s)	530, 786, 1340, 1380, 1439, 1583, 1778
SatI	GCNGC	7 cut(s)	492, 1205, 1845, 1914, 2214, 2217, 2316
Sau96I	GGNCC	4 cut(s)	1476, 1506, 2048, 2160
SchI	GAGTC	2 cut(s)	449, 2241
ScrFI	CCNGG	3 cut(s)	366, 2136, 2143
SduI	GDGCHC	2 cut(s)	2347, 2626
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	5 cut(s)	215, 917, 987, 1355, 2403
SfcI	CTRYAG	4 cut(s)	1842, 2403, 2412, 2572
Sfr274I	CTCGAG	1 cut(s)	1726
SinI	GGWCC	3 cut(s)	1476, 1506, 2048
SlaI	CTCGAG	1 cut(s)	1726
SmiMI	CAYNNNNRTG	3 cut(s)	956, 1293, 1606
SmlI	CTYRAG	5 cut(s)	478, 785, 1339, 1726, 2489
SmoI	CTYRAG	5 cut(s)	478, 785, 1339, 1726, 2489
SseBI	AGGCCT	1 cut(s)	2146
SspMI	CTAG	8 cut(s)	495, 1035, 1481, 1644, 1736, 1910, 1923, 2282
StuI	AGGCCT	1 cut(s)	2146
StyD4I	CCNGG	3 cut(s)	364, 2134, 2141
StyI	CCWWGG	1 cut(s)	438
TaiI	ACGT	4 cut(s)	1176, 1254, 1464, 1667
TaqI	TCGA	8 cut(s)	15, 147, 210, 1491, 1669, 1727, 2064, 2108
TaqII	GACCGA	3 cut(s)	121, 1827, 2291
TatI	WGTACW	2 cut(s)	1782, 2661
TauI	GCSGC	1 cut(s)	1916
TfiI	GAWTC	7 cut(s)	19, 563, 689, 821, 1199, 1484, 2116
Tru1I	TTAA	7 cut(s)	530, 786, 1340, 1380, 1439, 1583, 1778
Tru9I	TTAA	7 cut(s)	530, 786, 1340, 1380, 1439, 1583, 1778
TscAI	CASTG	3 cut(s)	1366, 2528, 2598
TseFI	GTSAC	7 cut(s)	106, 133, 717, 919, 1183, 1300, 1457
TseI	GCWGC	6 cut(s)	491, 1204, 1844, 2213, 2216, 2315
Tsp45I	GTSAC	7 cut(s)	106, 133, 717, 919, 1183, 1300, 1457
TspGWI	ACGGA	3 cut(s)	94, 1691, 2565
TspRI	CASTG	3 cut(s)	1366, 2528, 2598
Tth111I	GACNNNGTC	1 cut(s)	1463
Vha464I	CTTAAG	2 cut(s)	785, 1339
VpaK11BI	GGWCC	3 cut(s)	1476, 1506, 2048
XagI	CCTNNNNNAGG	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	2281
XceI	RCATGY	2 cut(s)	1269, 1942
XhoI	CTCGAG	1 cut(s)	1726
XmnI	GAANNNNTTC	1 cut(s)	1665
XspI	CTAG	8 cut(s)	495, 1035, 1481, 1644, 1736, 1910, 1923, 2282
ZraI	GACGTC	2 cut(s)	1174, 1462
Zsp2I	ATGCAT	1 cut(s)	2396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.