Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011954

Physical Location & Seq

Genomic Coordinates Reverse (-)

50245742 .. 50250794

Gene Structure 5053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG370100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGAACTTCAGGTTCCAGAACCTTCTCGGAGCGCCGTACCGGGGAGGAAACGCCGTCATCGTCAACAACACGGAGCTAATCTCACCGGTGGGGAACAGAGTCTCCGTCACCAACCTCCGCGACTCCGAGACCATAACCCTACCAATCCAATCCTCCTCCAACATAACCCGCCTCGCCGCCTCCCCCGACGGCGTCTTCCTCCTCACCGTCGACGAGAAGCACCGCTGCCTCTTCATCAACCTCCGCCGCCGCGTGGTTCTCCACCGCATTTCCTTCAAGAGCGCCGTCGCCGCCGTCAAGTTCAGCCCCGACGGCGGTTACATTGCGGTGGCCACCGGTAAGTTGGTCCAGATTTGGCGCTCGCCTGGGTTTAAGAAAGAGTTCTTTCCGTTCGAATTGGTTAAGACTTTTGCTGATTGTGATGATAAGGTTACGGCGTTGGAGTGGAGCCCCGACTCGGTTTATGTGCTGGCCGGGTCGAAAGACTTGACTGCTAGGATTTTCTGTATGAAAAAGTTTAAATTGGGAGGGGTAAAGATTAAGCCTTTTATGTTTTTGGGGCATAGGGATACAGTAGTGGGTGTGTTTTTCGGTGTTGATAAGAATGCCGGTAAGGTAAGCCGGGTTTATACAGTTGCGCGTGACGGTTATATGTTTGTGTGGGGTTTAAGTGGAGATGATGAGGAGGTGCCGTCTCCCGGGACACCGGAGAGGGATGGGGAAGGCAATGTGGAAGGTGATGGTAGTGTTGTTGTGAAGAAAAGGAAGGGTTTCGAGGGAAATGACGGTGAGTTGGATAAAGAAGGTGGGTATTTGATAAATAGGAAATGGGAGTTGTTGAAGAAAGAAAGTTTTGGGCAGGCGTCGATGAAGGTGACGGCATGTGATTATCATATGGGACTGGATATGTTGGTTGTGGGGTTCTCAAAGGGTGTATTTGCGCTGTATCAAATGCCGGATTTCGTGTGCATTCACAGATTGTCGATATCTAGAGAGAAAATTACAACAGCAGTTTTTAATGAGCTTGGGAATTGGCTGACATTTGGGTGTGCGAAACTTGGACAGTTGCTTGTATGGGAGTGGCGGTCTGAGAGTTATATTTTGAAGCAGCAGGGGCATTACTTTGATGTGAATTGTGTTGCTTATTCGCCTGATTCACAACTCTTGGCCACTGGGGCAGATGATAACAAAGTGAAGGTCTGGAATGTTTCTTCTGGATTCTGTTTTGTAACATTCTCTGAGCATGAAAATGCAATAACTGCACTCCACTTTTTGGCGAACAAAAATACGCTCTTAAGTGCCTCTTTGGATGGGACTGTTCGTGCATGGGATTTTTTCCGTTATCGAAATTTTAAGACATATACCACCGCAGAACCAAGACAATTTGTTTCTTTGACAGCAACTCAGAGTGGTGAAGTGATTTGTGCTGGAACTCTTGATACCTTTGAGATTTTTGTTTGGGATATGAGGACAGGCAACGTGAAGGACATTCTTAGTGGTCATGAAGGTCCTGTACATGGTTTGGCGTTTTCTCCTACAGATGCAAATGTTTTAGCTTCATCGTCGTGGGACAGAACAGTGCGGTTGTGGGATGTTTTTGAATCAAAAGGTGGTGTTGAAACATTTCCACACACACATGATGTTCTTACAGTAGTTTACCGCCCAGATGGAAAGCAATTGGCTTGCAGCACATTAGAAGGTCATATTCATTTCTGGGACCCAATTGATGGCGTATTAATGTATACCATTGAGGGTCGTAGGGATATTTCTGGTGGTCGTCTTATGACTGATCGTAGAACAGCTGCCAACTCAAGTTCAGGAAAGTTCTTTACAACCTTGTGTTATTCTGCTGATGGGAGTTACATATTAGCTGGGGGAAGTAGTAAATACATCTGCATGTATGATGTTGCTGATCAGGTATTACTGCGGAAGTTTCAAATAACTCACAATTTATCTTTGGATGGAGTTCTTGACTTCTTAAACTCAAAGAATATGACAGATGCTGGCCCCCTGGATCTAATTGATAATGATGACAGTGATATAGAAGAAGGTATTGACAAACAAACCCGGGGAAAGTTGGGTTATGATTTACCAGGGTCCATGCCTAATCGTGGAAGGCCTGTTGTTAGAACTAAATGCCTGAAAATTGCACCCACTGGTAGGAGCTTCTCAGCAGCAACAACAGAGGGAGTTCTAGTTTATTCTATTGATGATTCCTTTATCTTTGACCCAACTGATCTCGACATGGATGTCACGCCTGAGGTACTTGGTGAAACATTAATATTACTACTTAACGATGCCATTGCTTATGATAGAGTCACAGTTGTGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000151 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0010119 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034388 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

778

Amino Acids

86.28

Weight (kDa)

5.84

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	38 - 172	1.3e-11	THOC3 beta-propeller domain
WD40_Prp19	PF24814	39 - 162	2.4e-11	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	58 - 174	1.3e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	93 - 202	6.4e-10	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	142 - 350	1.5e-06	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	280 - 487	8.8e-14	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	285 - 402	7.4e-07	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	285 - 479	5e-21	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	287 - 456	2.2e-18	CDC20/Fizzy WD40 domain
WDR55	PF24796	291 - 573	2.5e-22	WDR55
Beta-prop_THOC3	PF25174	292 - 424	6.8e-15	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	302 - 480	7.3e-25	WDR5 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	309 - 422	7e-06	MABP1/WDR62 first WD40 domain
Beta-prop_EML	PF23409	314 - 479	9.3e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	315 - 480	1.2e-24	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	336 - 473	3e-12	Echinoderm microtubule-associated protein second beta-propeller
WDR90_beta-prop_4th	PF23342	348 - 440	4.8e-06	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	352 - 572	3e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	352 - 465	3.4e-09	WDR36/Utp21 first beta-propeller
WD40_Gbeta	PF25391	359 - 531	4.7e-21	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	366 - 487	1.7e-15	WDR3 second beta-propeller domain
WD40	PF00400	369 - 402	1.2e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	370 - 489	5.4e-10	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	371 - 449	1.1e-06	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	376 - 456	1.3e-14	WDHD1 first WD40 domain
EIF3I	PF24805	379 - 478	4.4e-07	EIF3I
Beta-prop_WDR90_POC16_2nd	PF23393	379 - 445	8.8e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR75_1st	PF23869	383 - 461	1.5e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	408 - 444	2e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	417 - 590	4.1e-15	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	421 - 577	1.2e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	445 - 565	5.6e-10	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	464 - 652	8.9e-18	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	464 - 533	8.4e-11	WDR3 first beta-propeller domain
EIF3I	PF24805	470 - 647	1.4e-06	EIF3I
Beta-prop_WDR5	PF25175	471 - 646	8.9e-18	WDR5 beta-propeller domain
WD40_Prp19	PF24814	472 - 532	2.3e-07	Prp19 WD40 domain
Beta-prop_EML	PF23409	483 - 650	7.3e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	483 - 605	6.1e-15	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	485 - 574	9.3e-17	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	495 - 585	5.9e-06	TEP-1 second beta-propeller
WD40	PF00400	496 - 531	1.2e-08	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	505 - 641	1.6e-08	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

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Orthologous Genes (Group: OG0011954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15440 AT1G15440
fragaria_vesca	FvH4_6g30400 FvH4_6g30400
malus_domestica	MD09G1221400.v1.1 MD17G1203900.v1.1
prunus_persica	Prupe.3G078900_v2.0.a1
pyrus_communis	pycom1094g00080 pycom17g20750
rosa_chinensis	RchiOBHm_Chr2g0136751
rosa_laevigata	RLG00000019569
rosa_multiflora	Rmu_sc0001299.1_g000021
rosa_roxburghii	Rroxscaffold_2G00108100
rosa_rugosa	Rorug02G0332800
rosa_samantha	Rh2AG383600 Rh2BG390300 Rh2CG370100 Rh2DG406900
rosa_wichuraiana	Rw2G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2249
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	2 cut(s)	1273, 1727
AccI	GTMKAC	2 cut(s)	210, 1742
AccII	CGCG	3 cut(s)	120, 252, 640
AclWI	GGATC	1 cut(s)	2022
AcoI	YGGCCR	3 cut(s)	330, 471, 1167
AcsI	RAATTY	1 cut(s)	1348
AcyI	GRCGYC	2 cut(s)	192, 863
AfaI	GTAC	3 cut(s)	38, 1515, 2265
AflII	CTTAAG	1 cut(s)	1294
AgeI	ACCGGT	2 cut(s)	85, 335
AgsI	TTSAA	6 cut(s)	277, 841, 1105, 1601, 1619, 1937
AjnI	CCWGG	3 cut(s)	364, 2010, 2092
AleI	CACNNNNGTG	1 cut(s)	2324
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	6 cut(s)	76, 1024, 1556, 1802, 1871, 2166
AluI	AGCT	6 cut(s)	76, 1024, 1556, 1802, 1871, 2166
Alw26I	GTCTC	3 cut(s)	106, 122, 699
AlwI	GGATC	1 cut(s)	2022
AlwNI	CAGNNNCTG	1 cut(s)	2003
Ama87I	CYCGRG	2 cut(s)	698, 2067
AoxI	GGCC	5 cut(s)	330, 471, 1167, 2005, 2117
ApeKI	GCWGC	5 cut(s)	225, 1108, 1686, 1802, 2174
ApoI	RAATTY	1 cut(s)	1348
ArsI	GACNNNNNNTTYG	2 cut(s)	1182, 1214
AseI	ATTAAT	2 cut(s)	1736, 2279
AsiGI	ACCGGT	2 cut(s)	85, 335
Asp700I	GAANNNNTTC	3 cut(s)	380, 770, 1623
AspLEI	GCGC	5 cut(s)	34, 284, 360, 640, 943
AspS9I	GGNCC	5 cut(s)	346, 1508, 1717, 2006, 2097
AsuC2I	CCSGG	7 cut(s)	41, 475, 623, 699, 700, 2068, 2069
AsuHPI	GGTGA	8 cut(s)	75, 100, 196, 749, 800, 886, 1424, 2282
AsuII	TTCGAA	1 cut(s)	393
AvaI	CYCGRG	2 cut(s)	698, 2067
AvaII	GGWCC	4 cut(s)	346, 1508, 1717, 2097
AxyI	CCTNAGG	1 cut(s)	2259
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BalI	TGGCCA	2 cut(s)	332, 1169
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	452
BarI	GAAGNNNNNNTAC	2 cut(s)	1497, 1529
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	5 cut(s)	212, 1120, 1698, 1789, 2186
BccI	CCATC	7 cut(s)	710, 734, 1304, 1661, 1721, 1847, 1955
BceAI	ACGGC	9 cut(s)	19, 38, 205, 269, 278, 328, 450, 676, 894
BcgI	CGANNNNNNTGC	2 cut(s)	2285, 2319
BciT130I	CCWGG	3 cut(s)	366, 2012, 2094
BciVI	GTATCC	1 cut(s)	562
BclI	TGATCA	1 cut(s)	1912
BcnI	CCSGG	7 cut(s)	41, 475, 623, 699, 700, 2068, 2069
BcoDI	GTCTC	3 cut(s)	106, 122, 699
BfaI	CTAG	3 cut(s)	495, 990, 2195
BfmI	CTRYAG	1 cut(s)	1536
BfoI	RGCGCY	3 cut(s)	35, 285, 361
BfrI	CTTAAG	1 cut(s)	1294
BfuI	GTATCC	1 cut(s)	562
BglI	GCCNNNNNGGC	2 cut(s)	312, 1175
BisI	GCNGC	9 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803, 2175
BlsI	GCNGC	9 cut(s)	178, 227, 248, 251, 292, 1110, 1688, 1804, 2176
Bme18I	GGWCC	4 cut(s)	346, 1508, 1717, 2097
BmeT110I	CYCGRG	2 cut(s)	698, 2067
BmgT120I	GGNCC	5 cut(s)	346, 1508, 1717, 2006, 2097
BmiI	GGNNCC	7 cut(s)	14, 449, 690, 1718, 1719, 2008, 2098
BmrI	ACTGGG	1 cut(s)	1182
BmsI	GCATC	3 cut(s)	1531, 1990, 2287
BmuI	ACTGGG	1 cut(s)	1182
BpiI	GAAGAC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	1795
BpuMI	CCSGG	7 cut(s)	41, 475, 623, 699, 700, 2068, 2069
BsaHI	GRCGYC	2 cut(s)	192, 863
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	7 cut(s)	40, 365, 698, 2010, 2067, 2068, 2093
BsaWI	WCCGGW	3 cut(s)	85, 335, 706
BsaXI	ACNNNNNCTCC	8 cut(s)	86, 116, 677, 707, 1070, 1100, 2181, 2211
Bse118I	RCCGGY	3 cut(s)	85, 335, 608
Bse1I	ACTGG	3 cut(s)	906, 1177, 2161
Bse21I	CCTNAGG	1 cut(s)	2259
Bse3DI	GCAATG	3 cut(s)	321, 733, 2301
BseBI	CCWGG	3 cut(s)	366, 2012, 2094
BseDI	CCNNGG	7 cut(s)	40, 365, 698, 2010, 2067, 2068, 2093
BseGI	GGATG	5 cut(s)	721, 1315, 1597, 1966, 2254
BseMI	GCAATG	3 cut(s)	321, 733, 2301
BseMII	CTCAG	5 cut(s)	1080, 1230, 1418, 2184, 2250
BseNI	ACTGG	3 cut(s)	906, 1177, 2161
BseRI	GAGGAG	3 cut(s)	145, 191, 698
BseXI	GCAGC	5 cut(s)	212, 1120, 1698, 1789, 2186
BseYI	CCCAGC	1 cut(s)	1871
BsgI	GTGCAG	1 cut(s)	1245
Bsh1236I	CGCG	3 cut(s)	120, 252, 640
BshFI	GGCC	5 cut(s)	332, 473, 1169, 2007, 2119
BshNI	GGYRCC	1 cut(s)	688
BshTI	ACCGGT	2 cut(s)	85, 335
BsiHKCI	CYCGRG	2 cut(s)	698, 2067
BslFI	GGGAC	5 cut(s)	715, 912, 1327, 1583, 1730
BsmAI	GTCTC	3 cut(s)	106, 122, 699
BsmBI	CGTCTC	1 cut(s)	699
BsmFI	GGGAC	5 cut(s)	715, 912, 1327, 1583, 1730
BsmI	GAATGC	2 cut(s)	610, 969
BsnI	GGCC	5 cut(s)	332, 473, 1169, 2007, 2119
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	2 cut(s)	698, 2067
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp1407I	TGTACA	1 cut(s)	1513
Bsp143I	GATC	4 cut(s)	1789, 1912, 2014, 2236
BspANI	GGCC	5 cut(s)	332, 473, 1169, 2007, 2119
BspCNI	CTCAG	5 cut(s)	1081, 1231, 1417, 2183, 2251
BspFNI	CGCG	3 cut(s)	120, 252, 640
BspHI	TCATGA	1 cut(s)	1501
BspLI	GGNNCC	7 cut(s)	14, 449, 690, 1718, 1719, 2008, 2098
BspPI	GGATC	1 cut(s)	2022
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	1294
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	321, 733, 2301
BsrFI	RCCGGY	3 cut(s)	85, 335, 608
BsrGI	TGTACA	1 cut(s)	1513
BsrI	ACTGG	3 cut(s)	906, 1177, 2161
BssAI	RCCGGY	3 cut(s)	85, 335, 608
BssECI	CCNNGG	7 cut(s)	40, 365, 698, 2010, 2067, 2068, 2093
BssMI	GATC	4 cut(s)	1789, 1912, 2014, 2236
BssNAI	GTATAC	1 cut(s)	1743
BssNI	GRCGYC	2 cut(s)	192, 863
Bst1107I	GTATAC	1 cut(s)	1743
Bst2UI	CCWGG	3 cut(s)	366, 2012, 2094
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	2 cut(s)	192, 863
BstAFI	CTTAAG	1 cut(s)	1294
BstAPI	GCANNNNNTGC	1 cut(s)	1259
BstAUI	TGTACA	1 cut(s)	1513
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	362, 471, 861, 1684, 2005
BstDEI	CTNAG	6 cut(s)	1089, 1239, 1404, 1493, 2170, 2259
BstF5I	GGATG	5 cut(s)	721, 1315, 1597, 1966, 2254
BstFNI	CGCG	3 cut(s)	120, 252, 640
BstH2I	RGCGCY	3 cut(s)	35, 285, 361
BstHHI	GCGC	5 cut(s)	34, 284, 360, 640, 943
BstKTI	GATC	4 cut(s)	1792, 1915, 2017, 2239
BstMAI	GTCTC	3 cut(s)	106, 122, 699
BstMBI	GATC	4 cut(s)	1789, 1912, 2014, 2236
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 312, 1114, 1175, 1259
BstNI	CCWGG	3 cut(s)	366, 2012, 2094
BstNSI	RCATGY	2 cut(s)	885, 1900
BstSFI	CTRYAG	1 cut(s)	1536
BstUI	CGCG	3 cut(s)	120, 252, 640
BstV1I	GCAGC	5 cut(s)	212, 1120, 1698, 1789, 2186
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	2014
BstYI	RGATCY	1 cut(s)	2014
BstZ17I	GTATAC	1 cut(s)	1743
Bsu36I	CCTNAGG	1 cut(s)	2259
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	5 cut(s)	332, 473, 1169, 2007, 2119
BtsCI	GGATG	5 cut(s)	721, 1315, 1597, 1966, 2254
BtsIMutI	CAGTG	4 cut(s)	1170, 1584, 2041, 2154
Cac8I	GCNNGC	5 cut(s)	362, 471, 861, 1684, 2005
CaiI	CAGNNNCTG	1 cut(s)	2003
CciI	TCATGA	1 cut(s)	1501
CfoI	GCGC	5 cut(s)	34, 284, 360, 640, 943
Cfr10I	RCCGGY	3 cut(s)	85, 335, 608
Cfr13I	GGNCC	5 cut(s)	346, 1508, 1717, 2006, 2097
Cfr9I	CCCGGG	2 cut(s)	698, 2067
CseI	GACGC	2 cut(s)	181, 852
Csp6I	GTAC	3 cut(s)	37, 1514, 2264
CspAI	ACCGGT	2 cut(s)	85, 335
CviAII	CATG	9 cut(s)	882, 1244, 1326, 1502, 1517, 1637, 1897, 2101, 2245
CviQI	GTAC	3 cut(s)	37, 1514, 2264
DdeI	CTNAG	6 cut(s)	1089, 1239, 1404, 1493, 2170, 2259
DpnI	GATC	4 cut(s)	1791, 1914, 2016, 2238
DpnII	GATC	4 cut(s)	1789, 1912, 2014, 2236
DraI	TTTAAA	1 cut(s)	520
DrdI	GACNNNNNNGTC	1 cut(s)	2249
DseDI	GACNNNNNNGTC	1 cut(s)	2249
EaeI	YGGCCR	3 cut(s)	330, 471, 1167
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	233
Eco147I	AGGCCT	1 cut(s)	2119
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	987
Eco47I	GGWCC	4 cut(s)	346, 1508, 1717, 2097
Eco81I	CCTNAGG	1 cut(s)	2259
Eco88I	CYCGRG	2 cut(s)	698, 2067
EcoO109I	RGGNCCY	2 cut(s)	1508, 1717
EcoRII	CCWGG	3 cut(s)	364, 2010, 2092
EcoRV	GATATC	1 cut(s)	987
EcoT38I	GRGCYC	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	699
FaeI	CATG	9 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900, 2104, 2248
FalI	AAGNNNNNCTT	2 cut(s)	1288, 1320
FaqI	GGGAC	5 cut(s)	715, 912, 1327, 1583, 1730
FatI	CATG	9 cut(s)	881, 1243, 1325, 1501, 1516, 1636, 1896, 2100, 2244
FauI	CCCGC	1 cut(s)	176
FauNDI	CATATG	1 cut(s)	894
FbaI	TGATCA	1 cut(s)	1912
FblI	GTMKAC	2 cut(s)	210, 1742
Fnu4HI	GCNGC	9 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803, 2175
FokI	GGATG	5 cut(s)	728, 1322, 1604, 1973, 2261
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	9 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803, 2175
FspBI	CTAG	3 cut(s)	495, 990, 2195
GlaI	GCGC	5 cut(s)	33, 283, 359, 639, 942
GluI	GCNGC	9 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803, 2175
GsaI	CCCAGC	1 cut(s)	1875
HaeII	RGCGCY	3 cut(s)	35, 285, 361
HaeIII	GGCC	5 cut(s)	332, 473, 1169, 2007, 2119
HgaI	GACGC	2 cut(s)	181, 852
HhaI	GCGC	5 cut(s)	34, 284, 360, 640, 943
Hin1I	GRCGYC	2 cut(s)	192, 863
Hin1II	CATG	9 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900, 2104, 2248
Hin6I	GCGC	5 cut(s)	32, 282, 358, 638, 941
HinP1I	GCGC	5 cut(s)	32, 282, 358, 638, 941
HincII	GTYRAC	2 cut(s)	64, 211
HindII	GTYRAC	2 cut(s)	64, 211
HinfI	GANTC	8 cut(s)	99, 122, 455, 1154, 1218, 1601, 2213, 2316
HphI	GGTGA	8 cut(s)	75, 100, 196, 749, 800, 886, 1424, 2282
Hpy166II	GTNNAC	4 cut(s)	64, 211, 1657, 1743
Hpy188I	TCNGA	5 cut(s)	29, 127, 1090, 1240, 1407
Hpy8I	GTNNAC	4 cut(s)	64, 211, 1657, 1743
Hpy99I	CGWCG	7 cut(s)	191, 212, 215, 290, 314, 868, 1567
HpyCH4IV	ACGT	1 cut(s)	1479
HpyCH4V	TGCA	8 cut(s)	969, 1253, 1262, 1325, 1544, 1686, 1896, 2150
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 312, 1114, 1175, 1259
HpyF3I	CTNAG	6 cut(s)	1089, 1239, 1404, 1493, 2170, 2259
HpySE526I	ACGT	1 cut(s)	1479
Hsp92I	GRCGYC	2 cut(s)	192, 863
Hsp92II	CATG	9 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900, 2104, 2248
HspAI	GCGC	5 cut(s)	32, 282, 358, 638, 941
KflI	GGGWCCC	1 cut(s)	1717
Ksp22I	TGATCA	1 cut(s)	1912
Kzo9I	GATC	4 cut(s)	1789, 1912, 2014, 2236
LmnI	GCTCC	4 cut(s)	29, 73, 447, 2163
Lsp1109I	GCAGC	5 cut(s)	212, 1120, 1698, 1789, 2186
LweI	GCATC	3 cut(s)	1531, 1990, 2287
MaeI	CTAG	3 cut(s)	495, 990, 2195
MaeII	ACGT	1 cut(s)	1479
MaeIII	GTNAC	9 cut(s)	106, 317, 430, 641, 874, 1228, 1859, 2251, 2317
MalI	GATC	4 cut(s)	1791, 1914, 2016, 2238
MboI	GATC	4 cut(s)	1789, 1912, 2014, 2236
MboII	GAAGA	6 cut(s)	187, 223, 769, 853, 1203, 2057
MfeI	CAATTG	2 cut(s)	1676, 1722
MflI	RGATCY	1 cut(s)	2014
MhlI	GDGCHC	1 cut(s)	452
MlsI	TGGCCA	2 cut(s)	332, 1169
MluNI	TGGCCA	2 cut(s)	332, 1169
MlyI	GAGTC	4 cut(s)	108, 116, 449, 2325
MmeI	TCCRAC	3 cut(s)	183, 420, 774
Mox20I	TGGCCA	2 cut(s)	332, 1169
MroXI	GAANNNNTTC	3 cut(s)	380, 770, 1623
MscI	TGGCCA	2 cut(s)	332, 1169
MslI	CAYNNNNRTG	7 cut(s)	326, 1045, 1248, 1564, 1635, 1895, 2324
Msp20I	TGGCCA	2 cut(s)	332, 1169
MspA1I	CMGCKG	2 cut(s)	225, 1802
MspCI	CTTAAG	1 cut(s)	1294
MunI	CAATTG	2 cut(s)	1676, 1722
Mva1269I	GAATGC	2 cut(s)	610, 969
MvaI	CCWGG	3 cut(s)	366, 2012, 2094
MvnI	CGCG	3 cut(s)	120, 252, 640
MwoI	GCNNNNNNNGC	5 cut(s)	290, 312, 1114, 1175, 1259
NciI	CCSGG	7 cut(s)	41, 475, 623, 699, 700, 2068, 2069
NdeI	CATATG	1 cut(s)	894
NdeII	GATC	4 cut(s)	1789, 1912, 2014, 2236
NlaIII	CATG	9 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900, 2104, 2248
NlaIV	GGNNCC	7 cut(s)	14, 449, 690, 1718, 1719, 2008, 2098
NmuCI	GTSAC	5 cut(s)	106, 641, 874, 2251, 2317
NspI	RCATGY	2 cut(s)	885, 1900
NspV	TTCGAA	1 cut(s)	393
OliI	CACNNNNGTG	1 cut(s)	2324
PagI	TCATGA	1 cut(s)	1501
PceI	AGGCCT	1 cut(s)	2119
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	2 cut(s)	610, 969
PdmI	GAANNNNTTC	3 cut(s)	380, 770, 1623
PfeI	GAWTC	4 cut(s)	1154, 1218, 1601, 2213
PflFI	GACNNNGTC	1 cut(s)	191
PflMI	CCANNNNNTGG	2 cut(s)	1273, 1727
PinAI	ACCGGT	2 cut(s)	85, 335
PkrI	GCNGC	9 cut(s)	178, 227, 248, 251, 292, 1110, 1688, 1804, 2176
PleI	GAGTC	4 cut(s)	107, 116, 449, 2324
PpsI	GAGTC	4 cut(s)	107, 116, 449, 2324
PpuMI	RGGWCCY	2 cut(s)	1508, 1717
PshBI	ATTAAT	2 cut(s)	1736, 2279
Psp5II	RGGWCCY	2 cut(s)	1508, 1717
Psp6I	CCWGG	3 cut(s)	364, 2010, 2092
PspFI	CCCAGC	1 cut(s)	1871
PspGI	CCWGG	3 cut(s)	364, 2010, 2092
PspN4I	GGNNCC	7 cut(s)	14, 449, 690, 1718, 1719, 2008, 2098
PspPI	GGNCC	5 cut(s)	346, 1508, 1717, 2006, 2097
PspPPI	RGGWCCY	2 cut(s)	1508, 1717
PsrI	GAACNNNNNNTAC	2 cut(s)	1423, 1455
PstNI	CAGNNNCTG	1 cut(s)	2003
PsuI	RGATCY	1 cut(s)	2014
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	1802
RsaI	GTAC	3 cut(s)	38, 1515, 2265
RsaNI	GTAC	3 cut(s)	37, 1514, 2264
RseI	CAYNNNNRTG	7 cut(s)	326, 1045, 1248, 1564, 1635, 1895, 2324
SalI	GTCGAC	1 cut(s)	209
SatI	GCNGC	9 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803, 2175
Sau3AI	GATC	4 cut(s)	1789, 1912, 2014, 2236
Sau96I	GGNCC	5 cut(s)	346, 1508, 1717, 2006, 2097
SchI	GAGTC	4 cut(s)	108, 116, 449, 2325
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	3 cut(s)	1531, 1990, 2287
SfcI	CTRYAG	1 cut(s)	1536
SfuI	TTCGAA	1 cut(s)	393
SgrAI	CRCCGGYG	1 cut(s)	85
SgrDI	CGTCGACG	1 cut(s)	209
SinI	GGWCC	4 cut(s)	346, 1508, 1717, 2097
SmaI	CCCGGG	2 cut(s)	700, 2069
SmiMI	CAYNNNNRTG	7 cut(s)	326, 1045, 1248, 1564, 1635, 1895, 2324
SmlI	CTYRAG	2 cut(s)	1294, 1810
SmoI	CTYRAG	2 cut(s)	1294, 1810
SseBI	AGGCCT	1 cut(s)	2119
SspI	AATATT	1 cut(s)	2283
SspMI	CTAG	3 cut(s)	495, 990, 2195
StuI	AGGCCT	1 cut(s)	2119
TaiI	ACGT	1 cut(s)	1482
TaqI	TCGA	8 cut(s)	210, 393, 479, 774, 866, 983, 1345, 2241
TatI	WGTACW	1 cut(s)	1513
TauI	GCSGC	4 cut(s)	179, 249, 252, 293
TfiI	GAWTC	4 cut(s)	1154, 1218, 1601, 2213
TscAI	CASTG	4 cut(s)	1177, 1584, 2041, 2161
TseFI	GTSAC	5 cut(s)	106, 641, 874, 2251, 2317
TseI	GCWGC	5 cut(s)	225, 1108, 1686, 1802, 2174
Tsp45I	GTSAC	5 cut(s)	106, 641, 874, 2251, 2317
TspDTI	ATGAA	8 cut(s)	17, 223, 524, 884, 1260, 1518, 1548, 1697
TspGWI	ACGGA	4 cut(s)	86, 94, 378, 1328
TspMI	CCCGGG	2 cut(s)	698, 2067
TspRI	CASTG	4 cut(s)	1177, 1584, 2041, 2161
Tth111I	GACNNNGTC	1 cut(s)	191
Van91I	CCANNNNNTGG	2 cut(s)	1273, 1727
Vha464I	CTTAAG	1 cut(s)	1294
VpaK11BI	GGWCC	4 cut(s)	346, 1508, 1717, 2097
VspI	ATTAAT	2 cut(s)	1736, 2279
XapI	RAATTY	1 cut(s)	1348
XbaI	TCTAGA	1 cut(s)	989
XceI	RCATGY	2 cut(s)	885, 1900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmaI	CCCGGG	2 cut(s)	698, 2067
XmiI	GTMKAC	2 cut(s)	210, 1742
XmnI	GAANNNNTTC	3 cut(s)	380, 770, 1623
XspI	CTAG	3 cut(s)	495, 990, 2195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.