Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011954

Physical Location & Seq

Genomic Coordinates Reverse (-)

41218872 .. 41219189

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0332800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTGTTAAAAGGGAGCGTGAAAATATGGAAGAGATCGAGCGGATTCAAGTAACAAACTCTCAAGCGGCTGCGATGGTGGCGCAATATCAATTATCGGAGACACCTAGAAAGCGTGGTTCACGACCTGGCCGTGACCCAAAAGTCGAAAGACATAGAGAAGTCCGAGGTCATTTTCTCCTGAAGGATTATTTTGTCGAACGTCCAGTGTACGACGAAGCAGATTTTCGGAGGCGGTACAGAATGCAAAAACATGTCTTCCAACGCATAATGGAATGTCTTCCAACGCATAATGGAGGACCTATGCAACTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000151 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0010119 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034388 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

105

Amino Acids

12.7

Weight (kDa)

10.07

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15440 AT1G15440
fragaria_vesca	FvH4_6g30400 FvH4_6g30400
malus_domestica	MD09G1221400.v1.1 MD17G1203900.v1.1
prunus_persica	Prupe.3G078900_v2.0.a1
pyrus_communis	pycom1094g00080 pycom17g20750
rosa_chinensis	RchiOBHm_Chr2g0136751
rosa_laevigata	RLG00000019569
rosa_multiflora	Rmu_sc0001299.1_g000021
rosa_roxburghii	Rroxscaffold_2G00108100
rosa_rugosa	Rorug02G0332800
rosa_samantha	Rh2AG383600 Rh2BG390300 Rh2CG370100 Rh2DG406900
rosa_wichuraiana	Rw2G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	3 cut(s)	43, 68, 235
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	212, 239
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	71
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	250, 272
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	250, 272
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	3 cut(s)	43, 68, 235
BspANI	GGCC	1 cut(s)	132
BsrBI	CCGCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	2 cut(s)	250, 272
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	213
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	211, 238
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	2 cut(s)	71, 132
CviKI_1	RGCY	2 cut(s)	71, 132
CviQI	GTAC	2 cut(s)	211, 238
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	257
FaiI	YATR	6 cut(s)	29, 156, 255, 269, 291, 305
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	69, 72
Fsp4HI	GCNGC	2 cut(s)	69, 72
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	69, 72
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	122, 211
Hpy188I	TCNGA	3 cut(s)	100, 167, 231
Hpy188III	TCNNGA	2 cut(s)	123, 181
Hpy8I	GTNNAC	2 cut(s)	122, 211
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	247, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	114, 141, 194, 219
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	52, 134
MalI	GATC	1 cut(s)	38
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	1 cut(s)	36
MboII	GAAGA	3 cut(s)	44, 250, 272
MluCI	AATT	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	286, 308
MnlI	CCTC	3 cut(s)	161, 225, 290
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	257
PciI	ACATGT	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	70, 73
PpuMI	RGGWCCY	1 cut(s)	299
PscI	ACATGT	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
RsaI	GTAC	2 cut(s)	212, 239
RsaNI	GTAC	2 cut(s)	211, 238
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	69, 72
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	5 cut(s)	109, 130, 172, 205, 304
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	3 cut(s)	43, 68, 235
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	127
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	4 cut(s)	39, 147, 198, 313
TasI	AATT	1 cut(s)	92
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	134
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	299
XceI	RCATGY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.