Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011954

Physical Location & Seq

Genomic Coordinates Reverse (-)

25480228 .. 25480966

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1221400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCACTAATTTTTTTAGCTGTTGATGCTGCACGCAATGAAGATAAATTGAGCAAGGCTTTAATCCTTAGTCTCAGATTAAACGAAGACAGTCTAATTAAAAAGTGTATTTTCAAAGTTAATCTGTTAGAAAGTCGCCCACATTTGGAGTTCATACTTCGGTGGTGTCAGGAGCTCTGCAAAGTTCATGGTAACTCTATTCAACAAAACTCTAGAAAGCTGCTTCCTGCTTTAAAATCCCTACAGACGGCAATAACAAGAACACATCAGGATTTGAAAGAGACATGTTCTTCCAATGAATATATGCTTCAATATTTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000151 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0010119 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034388 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

108

Amino Acids

12.36

Weight (kDa)

8.9

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp12	PF04003	41 - 107	5.9e-16	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15440 AT1G15440
fragaria_vesca	FvH4_6g30400 FvH4_6g30400
malus_domestica	MD09G1221400.v1.1 MD17G1203900.v1.1
prunus_persica	Prupe.3G078900_v2.0.a1
pyrus_communis	pycom1094g00080 pycom17g20750
rosa_chinensis	RchiOBHm_Chr2g0136751
rosa_laevigata	RLG00000019569
rosa_multiflora	Rmu_sc0001299.1_g000021
rosa_roxburghii	Rroxscaffold_2G00108100
rosa_rugosa	Rorug02G0332800
rosa_samantha	Rh2AG383600 Rh2BG390300 Rh2CG370100 Rh2DG406900
rosa_wichuraiana	Rw2G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	145, 247
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	115, 203, 277, 311
AluBI	AGCT	3 cut(s)	20, 175, 220
AluI	AGCT	3 cut(s)	20, 175, 220
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	77, 275
ApeKI	GCWGC	2 cut(s)	29, 220
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	16, 207
BceAI	ACGGC	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	77, 275
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	242
BisI	GCNGC	2 cut(s)	30, 221
BlsI	GCNGC	2 cut(s)	31, 222
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 247
Bse3DI	GCAATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	145, 247
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	16, 207
BsgI	GTGCAG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	145, 247
BsmAI	GTCTC	2 cut(s)	77, 275
Bsp1286I	GDGCHC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	68, 74
BstMAI	GTCTC	2 cut(s)	77, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	16, 207
BstV2I	GAAGAC	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	34
CviAII	CATG	2 cut(s)	188, 285
CviJI	RGCY	4 cut(s)	20, 59, 175, 220
CviKI_1	RGCY	4 cut(s)	20, 59, 175, 220
DdeI	CTNAG	2 cut(s)	68, 74
DraI	TTTAAA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	2 cut(s)	191, 288
FaiI	YATR	6 cut(s)	155, 189, 286, 303, 305, 319
FatI	CATG	2 cut(s)	187, 284
Fnu4HI	GCNGC	2 cut(s)	30, 221
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	30, 221
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	30, 221
Hin1II	CATG	2 cut(s)	191, 288
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	3 cut(s)	170, 213, 269
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	32, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	68, 74
Hsp92II	CATG	2 cut(s)	191, 288
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	155, 240, 254
Lsp1109I	GCAGC	2 cut(s)	16, 207
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	53, 98, 282
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	3 cut(s)	9, 47, 96
MseI	TTAA	6 cut(s)	62, 80, 99, 120, 233, 322
MwoI	GCNNNNNNNGC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	191, 288
NspI	RCATGY	1 cut(s)	288
PciI	ACATGT	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	31, 222
PscI	ACATGT	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	6 cut(s)	62, 80, 99, 120, 233, 322
SatI	GCNGC	2 cut(s)	30, 221
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	3 cut(s)	22, 177, 222
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	242
SgeI	CNNG	9 cut(s)	45, 67, 182, 200, 225, 239, 270, 281, 297
Sse9I	AATT	3 cut(s)	9, 47, 96
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	3 cut(s)	9, 47, 96
Tru1I	TTAA	6 cut(s)	62, 80, 99, 120, 233, 322
Tru9I	TTAA	6 cut(s)	62, 80, 99, 120, 233, 322
TseI	GCWGC	2 cut(s)	29, 220
TspDTI	ATGAA	4 cut(s)	54, 142, 176, 312
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	288
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.