Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011954

Physical Location & Seq

Genomic Coordinates Reverse (-)

57352761 .. 57357828

Gene Structure 5068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG383600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGAACTTCAGGTTCCAGAACCTTCTCGGAGCGCCGTACCGGGGAGGGAACGCCGTCATCGTCAACAACACGGAGCTAATCTCACCGGTGGGGAACAGAGTCTCCGTCACCAACCTCCGTGACTCCGAGACCATAACCCTACCCATCCAATCCTCCTCCAACATAACCCGCCTCGCCGCCTCTCCCGACGGCGTCTTCCTCCTCACCGTCGACGAGAAGCACCGCTGCCTCTTCATCAACCTCCGCCGCCGCGTGGTTCTCCACCGCATTTCCTTCAAGAGCGCCGTCGCCGCCGTCAAGTTCAGCCCCGACGGCGGTTACATTGCGGTGGCCACCGGTAAGTTGGTCCAGATTTGGCGCTCGCCTGGGTTTAAGAAAGAGTTCTTTCCGTTCGAATTGGTTAAGACTTTTGCTGATTGTGATGATAACGTTACGGCGTTGGAGTGGAGCCCCGACTCGGTTTATGTGCTAGCCGGGTCGAAAGACTTGACTGCTAGGATTTTCTGTATGAAAAAGTTTAAATTGGGAGGGGTAAAGATTAAGCCTTTTATGTTTTTGGGGCATAGGGATACAGTAGTGGGTGTGTTTTTCGGTGTTGATAAGAATGCCGGTAGGGTAAGCCGGGTTTATACAGTTGCGCGTGACGGTTATATGTTTGTGTGGGGTTTAAGTGGAGATGATGAGGAGGTGCCCTCTCCCGGGACACCGGAGAGGGACGGGAAAGGCAATGTGGAAGGTGATGGTAGTGTTGTTGTGAAGAAAAGGAAGGGGTTTGAGGGAAATGACGGTGAGTTGGATAAAGAAGGTGGGTATTTGATAAATAGGAAATGGGAGTTGTTCAAGAAAGAAAGTTTTGGGCAGGCGTCGATGAAGGTGACGGCATGTGATTATCATAGGGGGCTGGATATGTTGGTTGTGGGGTTCTCAAAGGGTGTGTTTGCGCTGTATCAAATGCCGGATTTCGTGTGCATTCACAGATTGTCGATATCTAGAGAGAAAATTACAACAGCGGTTTTTAATGAGCTTGGGAATTGGCTGACATTTGGGTGTGCAAAACTTGGACAGTTGCTTGTATGGGAGTGGCGGTCTGAGAGTTATATTTTGAAGCAGCAGGGGCATTACTTTGATGTGAATTGTGTTGCTTATTCGCCTGATTCACAACTCTTAGCCACTGGGGCAGATGATAACAAAGTGAAGGTCTGGAATGTTTCTTCAGGATTCTGTTTTGTAACATTCTCTGAGCATGAAAATGCAATAACTGCACTCCACTTTTTGGCGAACAAAAATACGCTCTTAAGTGCCTCTTTGGATGGGACTGTTCGTGCATGGGATTTTTTCCGTTATCGAAATTTTAAGACATATACCACCGCAGAACCAAGACAATTTGTTTCTTTGACAGCAACTCAGAGTGGTGAAGTGATTTGTGCTGGAACTCTTGATACCTTTGAGATTTTTGTGTGGGATATGAGGACAGGCAACGTGAAGGACATTCTTAGTGGTCATGAAGGTCCTGTACATGGTTTGGCGTTTTCTCCTACAGATGCAAATGTTTTAGCTTCATCGTCGTGGGACAGAACAGTTCGGTTGTGGGATGTTTTTGAATCAAAAGGTGGTGTTGAAACATTTCCACACACACATGATGTTCTTACAGTAGTTTACCGCCCAGATGGAAAGCAATTGGCTTGCAGCACATTAGAAGGTCATATTCATTTCTGGGACCCAATTGATGGTGTATTAATGTATACCATTGAGGGTCGTAGGGATATTTCTGGTGGTCGTCTTATGACTGATCGTAGAACAGCTGCCAACTCAAGTTCAGGAAAGTTCTTTACAACCTTGTGTTATTCTGCTGATGGGAGTTACATATTAGCTGGGGGAAGTAGTAAATACATCTGCATGTATGATGTTGCTGATCAGGTTAGTTTGCTTAATAGTAAAACTTCTTCACTTAAGTTTATATTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000151 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0010119 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034388 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

655

Amino Acids

72.89

Weight (kDa)

8.13

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	38 - 173	4.2e-12	THOC3 beta-propeller domain
WD40_Prp19	PF24814	39 - 162	2.5e-11	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	58 - 176	1.1e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	91 - 226	9.5e-06	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	93 - 202	4.1e-10	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	280 - 468	5.4e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	285 - 402	6.5e-07	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	285 - 480	2.1e-21	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	287 - 530	1.6e-26	CDC20/Fizzy WD40 domain
WDR55	PF24796	291 - 573	1.6e-22	WDR55
Beta-prop_WDR5	PF25175	292 - 480	4.5e-25	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	295 - 424	7.6e-15	THOC3 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	309 - 423	5.6e-06	MABP1/WDR62 first WD40 domain
Beta-prop_EML	PF23409	312 - 479	6.3e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	315 - 480	9.2e-25	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	333 - 472	8.8e-13	Echinoderm microtubule-associated protein second beta-propeller
WDR90_beta-prop_4th	PF23342	348 - 440	3.6e-06	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	352 - 572	2.1e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	352 - 467	2.2e-09	WDR36/Utp21 first beta-propeller
WD40_Gbeta	PF25391	359 - 531	3.4e-21	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	366 - 481	1.7e-15	WDR3 second beta-propeller domain
WD40	PF00400	369 - 402	1e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	370 - 490	3.4e-10	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	371 - 449	8.6e-07	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	376 - 456	1e-14	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	379 - 445	6.2e-06	WDR90/POC16, second beta-propeller
EIF3I	PF24805	381 - 478	9.3e-07	EIF3I
Beta-prop_WDR75_1st	PF23869	383 - 461	1.2e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	408 - 444	1.7e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	418 - 590	5.3e-15	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	421 - 577	8.7e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	445 - 565	4.3e-10	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	464 - 648	6.8e-17	WDHD1 first WD40 domain
EIF3I	PF24805	470 - 646	1.9e-06	EIF3I
Beta-prop_WDR5	PF25175	471 - 583	1.5e-16	WDR5 beta-propeller domain
WD40_Prp19	PF24814	472 - 532	2e-07	Prp19 WD40 domain
Beta-prop_EML	PF23409	483 - 637	3.1e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	483 - 606	4.4e-15	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	485 - 574	7.3e-17	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	496 - 587	4.3e-06	TEP-1 second beta-propeller
WD40	PF00400	496 - 531	9.4e-09	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	505 - 649	5.3e-09	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15440 AT1G15440
fragaria_vesca	FvH4_6g30400 FvH4_6g30400
malus_domestica	MD09G1221400.v1.1 MD17G1203900.v1.1
prunus_persica	Prupe.3G078900_v2.0.a1
pyrus_communis	pycom1094g00080 pycom17g20750
rosa_chinensis	RchiOBHm_Chr2g0136751
rosa_laevigata	RLG00000019569
rosa_multiflora	Rmu_sc0001299.1_g000021
rosa_roxburghii	Rroxscaffold_2G00108100
rosa_rugosa	Rorug02G0332800
rosa_samantha	Rh2AG383600 Rh2BG390300 Rh2CG370100 Rh2DG406900
rosa_wichuraiana	Rw2G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	2 cut(s)	1273, 1727
AccI	GTMKAC	2 cut(s)	210, 1742
AccII	CGCG	2 cut(s)	252, 640
AclI	AACGTT	1 cut(s)	429
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	1348
AcuI	CTGAAG	1 cut(s)	1197
AcyI	GRCGYC	2 cut(s)	192, 863
AfaI	GTAC	2 cut(s)	38, 1515
AfiI	CCNNNNNNNGG	9 cut(s)	41, 253, 314, 457, 698, 699, 1273, 1517, 1727
AflII	CTTAAG	2 cut(s)	1294, 1949
AgeI	ACCGGT	2 cut(s)	85, 335
AgsI	TTSAA	5 cut(s)	277, 841, 1105, 1601, 1619
AjnI	CCWGG	1 cut(s)	364
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	5 cut(s)	76, 1024, 1556, 1802, 1871
AluI	AGCT	5 cut(s)	76, 1024, 1556, 1802, 1871
Alw26I	GTCTC	2 cut(s)	106, 122
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	4 cut(s)	225, 1108, 1686, 1802
ApoI	RAATTY	1 cut(s)	1348
ArsI	GACNNNNNNTTYG	2 cut(s)	1182, 1214
AseI	ATTAAT	1 cut(s)	1736
AsiGI	ACCGGT	2 cut(s)	85, 335
Asp700I	GAANNNNTTC	2 cut(s)	380, 1623
AspLEI	GCGC	5 cut(s)	34, 284, 360, 640, 943
AspS9I	GGNCC	3 cut(s)	346, 1508, 1717
AsuC2I	CCSGG	5 cut(s)	41, 475, 623, 699, 700
AsuHPI	GGTGA	7 cut(s)	75, 100, 196, 749, 800, 886, 1424
AsuII	TTCGAA	1 cut(s)	393
AsuNHI	GCTAGC	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	3 cut(s)	346, 1508, 1717
BaeGI	GKGCMC	1 cut(s)	693
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	452
BarI	GAAGNNNNNNTAC	4 cut(s)	1497, 1529, 1927, 1959
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	4 cut(s)	212, 1120, 1698, 1789
BccI	CCATC	6 cut(s)	152, 734, 1304, 1661, 1721, 1847
BceAI	ACGGC	8 cut(s)	19, 38, 205, 269, 278, 328, 450, 894
BciT130I	CCWGG	1 cut(s)	366
BciVI	GTATCC	1 cut(s)	562
BclI	TGATCA	1 cut(s)	1912
BcnI	CCSGG	5 cut(s)	41, 475, 623, 699, 700
BcoDI	GTCTC	2 cut(s)	106, 122
BfaI	CTAG	3 cut(s)	470, 495, 990
BfmI	CTRYAG	1 cut(s)	1536
BfoI	RGCGCY	3 cut(s)	35, 285, 361
BfrI	CTTAAG	2 cut(s)	1294, 1949
BfuI	GTATCC	1 cut(s)	562
BglI	GCCNNNNNGGC	2 cut(s)	312, 1175
BisI	GCNGC	8 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803
BlsI	GCNGC	8 cut(s)	178, 227, 248, 251, 292, 1110, 1688, 1804
Bme1390I	CCNGG	6 cut(s)	41, 366, 475, 623, 699, 700
Bme18I	GGWCC	3 cut(s)	346, 1508, 1717
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	3 cut(s)	346, 1508, 1717
BmiI	GGNNCC	5 cut(s)	14, 449, 690, 1718, 1719
BmrFI	CCNGG	6 cut(s)	41, 366, 475, 623, 699, 700
BmrI	ACTGGG	1 cut(s)	1182
BmsI	GCATC	1 cut(s)	1531
BmtI	GCTAGC	1 cut(s)	473
BmuI	ACTGGG	1 cut(s)	1182
BpiI	GAAGAC	1 cut(s)	187
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 677, 709
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	1795
BpuMI	CCSGG	5 cut(s)	41, 475, 623, 699, 700
BsaHI	GRCGYC	2 cut(s)	192, 863
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	40, 365, 698
BsaWI	WCCGGW	3 cut(s)	85, 335, 706
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 1070, 1100
Bsc4I	CCNNNNNNNGG	9 cut(s)	41, 253, 314, 457, 698, 699, 1273, 1517, 1727
Bse118I	RCCGGY	3 cut(s)	85, 335, 608
Bse1I	ACTGG	1 cut(s)	1177
Bse3DI	GCAATG	2 cut(s)	321, 733
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	40, 365, 698
BseGI	GGATG	3 cut(s)	144, 1315, 1597
BseLI	CCNNNNNNNGG	9 cut(s)	41, 253, 314, 457, 698, 699, 1273, 1517, 1727
BseMI	GCAATG	2 cut(s)	321, 733
BseMII	CTCAG	3 cut(s)	1080, 1230, 1418
BseNI	ACTGG	1 cut(s)	1177
BseRI	GAGGAG	3 cut(s)	145, 191, 698
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	4 cut(s)	212, 1120, 1698, 1789
BseYI	CCCAGC	1 cut(s)	1871
BsgI	GTGCAG	1 cut(s)	1245
Bsh1236I	CGCG	2 cut(s)	252, 640
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	688
BshTI	ACCGGT	2 cut(s)	85, 335
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	9 cut(s)	40, 86, 336, 474, 609, 622, 699, 707, 956
BslFI	GGGAC	5 cut(s)	715, 728, 1327, 1583, 1730
BslI	CCNNNNNNNGG	9 cut(s)	41, 253, 314, 457, 698, 699, 1273, 1517, 1727
BsmAI	GTCTC	2 cut(s)	106, 122
BsmFI	GGGAC	5 cut(s)	715, 728, 1327, 1583, 1730
BsmI	GAATGC	2 cut(s)	610, 969
BsnI	GGCC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	452, 693
Bsp1407I	TGTACA	1 cut(s)	1513
Bsp143I	GATC	2 cut(s)	1789, 1912
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	3 cut(s)	1081, 1231, 1417
BspFNI	CGCG	2 cut(s)	252, 640
BspHI	TCATGA	1 cut(s)	1501
BspLI	GGNNCC	5 cut(s)	14, 449, 690, 1718, 1719
BspOI	GCTAGC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	688
BspTI	CTTAAG	2 cut(s)	1294, 1949
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	321, 733
BsrFI	RCCGGY	3 cut(s)	85, 335, 608
BsrGI	TGTACA	1 cut(s)	1513
BsrI	ACTGG	1 cut(s)	1177
BssAI	RCCGGY	3 cut(s)	85, 335, 608
BssECI	CCNNGG	3 cut(s)	40, 365, 698
BssMI	GATC	2 cut(s)	1789, 1912
BssNAI	GTATAC	1 cut(s)	1743
BssNI	GRCGYC	2 cut(s)	192, 863
Bst1107I	GTATAC	1 cut(s)	1743
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	9 cut(s)	208, 574, 634, 647, 788, 1065, 1318, 1579, 1651
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	2 cut(s)	192, 863
BstAFI	CTTAAG	2 cut(s)	1294, 1949
BstAPI	GCANNNNNTGC	1 cut(s)	1259
BstAUI	TGTACA	1 cut(s)	1513
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	362, 471, 861, 1684
BstDEI	CTNAG	5 cut(s)	1089, 1165, 1239, 1404, 1493
BstF5I	GGATG	3 cut(s)	144, 1315, 1597
BstFNI	CGCG	2 cut(s)	252, 640
BstH2I	RGCGCY	3 cut(s)	35, 285, 361
BstHHI	GCGC	5 cut(s)	34, 284, 360, 640, 943
BstKTI	GATC	2 cut(s)	1792, 1915
BstMAI	GTCTC	2 cut(s)	106, 122
BstMBI	GATC	2 cut(s)	1789, 1912
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 312, 1114, 1175, 1259
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	2 cut(s)	885, 1900
BstSCI	CCNGG	6 cut(s)	39, 364, 473, 621, 697, 698
BstSFI	CTRYAG	1 cut(s)	1536
BstSLI	GKGCMC	1 cut(s)	693
BstUI	CGCG	2 cut(s)	252, 640
BstV1I	GCAGC	4 cut(s)	212, 1120, 1698, 1789
BstV2I	GAAGAC	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	1743
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	144, 1315, 1597
BtsIMutI	CAGTG	1 cut(s)	1170
Cac8I	GCNNGC	4 cut(s)	362, 471, 861, 1684
CciI	TCATGA	1 cut(s)	1501
CfoI	GCGC	5 cut(s)	34, 284, 360, 640, 943
Cfr10I	RCCGGY	3 cut(s)	85, 335, 608
Cfr13I	GGNCC	3 cut(s)	346, 1508, 1717
Cfr9I	CCCGGG	1 cut(s)	698
CseI	GACGC	2 cut(s)	181, 852
Csp6I	GTAC	2 cut(s)	37, 1514
CspAI	ACCGGT	2 cut(s)	85, 335
CviAII	CATG	7 cut(s)	882, 1244, 1326, 1502, 1517, 1637, 1897
CviQI	GTAC	2 cut(s)	37, 1514
DdeI	CTNAG	5 cut(s)	1089, 1165, 1239, 1404, 1493
DpnI	GATC	2 cut(s)	1791, 1914
DpnII	GATC	2 cut(s)	1789, 1912
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	987
Eco47I	GGWCC	3 cut(s)	346, 1508, 1717
Eco57I	CTGAAG	1 cut(s)	1197
Eco88I	CYCGRG	1 cut(s)	698
EcoO109I	RGGNCCY	2 cut(s)	1508, 1717
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	987
EcoT38I	GRGCYC	1 cut(s)	452
FaeI	CATG	7 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900
FalI	AAGNNNNNCTT	2 cut(s)	1288, 1320
FaqI	GGGAC	5 cut(s)	715, 728, 1327, 1583, 1730
FatI	CATG	7 cut(s)	881, 1243, 1325, 1501, 1516, 1636, 1896
FauI	CCCGC	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	1912
FblI	GTMKAC	2 cut(s)	210, 1742
Fnu4HI	GCNGC	8 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803
FokI	GGATG	3 cut(s)	131, 1322, 1604
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	8 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803
FspBI	CTAG	3 cut(s)	470, 495, 990
GlaI	GCGC	5 cut(s)	33, 283, 359, 639, 942
GluI	GCNGC	8 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803
GsaI	CCCAGC	1 cut(s)	1875
HaeII	RGCGCY	3 cut(s)	35, 285, 361
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	9 cut(s)	40, 86, 336, 474, 609, 622, 699, 707, 956
HgaI	GACGC	2 cut(s)	181, 852
HhaI	GCGC	5 cut(s)	34, 284, 360, 640, 943
Hin1I	GRCGYC	2 cut(s)	192, 863
Hin1II	CATG	7 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900
Hin6I	GCGC	5 cut(s)	32, 282, 358, 638, 941
HinP1I	GCGC	5 cut(s)	32, 282, 358, 638, 941
HincII	GTYRAC	2 cut(s)	64, 211
HindII	GTYRAC	2 cut(s)	64, 211
HinfI	GANTC	6 cut(s)	99, 122, 455, 1154, 1218, 1601
HpaII	CCGG	9 cut(s)	40, 86, 336, 474, 609, 622, 699, 707, 956
HphI	GGTGA	7 cut(s)	75, 100, 196, 749, 800, 886, 1424
Hpy166II	GTNNAC	4 cut(s)	64, 211, 1657, 1743
Hpy188I	TCNGA	5 cut(s)	29, 127, 1090, 1240, 1407
Hpy8I	GTNNAC	4 cut(s)	64, 211, 1657, 1743
Hpy99I	CGWCG	7 cut(s)	191, 212, 215, 290, 314, 868, 1567
HpyCH4III	ACNGT	9 cut(s)	208, 574, 634, 647, 788, 1065, 1318, 1579, 1651
HpyCH4IV	ACGT	2 cut(s)	429, 1479
HpyCH4V	TGCA	8 cut(s)	969, 1052, 1253, 1262, 1325, 1544, 1686, 1896
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 312, 1114, 1175, 1259
HpyF3I	CTNAG	5 cut(s)	1089, 1165, 1239, 1404, 1493
HpySE526I	ACGT	2 cut(s)	429, 1479
Hsp92I	GRCGYC	2 cut(s)	192, 863
Hsp92II	CATG	7 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900
HspAI	GCGC	5 cut(s)	32, 282, 358, 638, 941
KflI	GGGWCCC	1 cut(s)	1717
Ksp22I	TGATCA	1 cut(s)	1912
Kzo9I	GATC	2 cut(s)	1789, 1912
LmnI	GCTCC	3 cut(s)	29, 73, 447
Lsp1109I	GCAGC	4 cut(s)	212, 1120, 1698, 1789
LweI	GCATC	1 cut(s)	1531
MaeI	CTAG	3 cut(s)	470, 495, 990
MaeII	ACGT	2 cut(s)	429, 1479
MaeIII	GTNAC	8 cut(s)	106, 119, 317, 430, 641, 874, 1228, 1859
MalI	GATC	2 cut(s)	1791, 1914
MboI	GATC	2 cut(s)	1789, 1912
MboII	GAAGA	5 cut(s)	187, 223, 769, 1203, 1935
MfeI	CAATTG	2 cut(s)	1676, 1722
MhlI	GDGCHC	2 cut(s)	452, 693
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	9 cut(s)	395, 521, 999, 1030, 1132, 1348, 1382, 1676, 1722
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	3 cut(s)	108, 116, 449
MmeI	TCCRAC	3 cut(s)	183, 420, 774
Mox20I	TGGCCA	1 cut(s)	332
MroXI	GAANNNNTTC	2 cut(s)	380, 1623
MscI	TGGCCA	1 cut(s)	332
MslI	CAYNNNNRTG	6 cut(s)	326, 1045, 1248, 1564, 1635, 1895
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	3 cut(s)	225, 1010, 1802
MspCI	CTTAAG	2 cut(s)	1294, 1949
MspI	CCGG	9 cut(s)	40, 86, 336, 474, 609, 622, 699, 707, 956
MspR9I	CCNGG	6 cut(s)	41, 366, 475, 623, 699, 700
MunI	CAATTG	2 cut(s)	1676, 1722
Mva1269I	GAATGC	2 cut(s)	610, 969
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	2 cut(s)	252, 640
MwoI	GCNNNNNNNGC	5 cut(s)	290, 312, 1114, 1175, 1259
NciI	CCSGG	5 cut(s)	41, 475, 623, 699, 700
NdeII	GATC	2 cut(s)	1789, 1912
NheI	GCTAGC	1 cut(s)	469
NlaIII	CATG	7 cut(s)	885, 1247, 1329, 1505, 1520, 1640, 1900
NlaIV	GGNNCC	5 cut(s)	14, 449, 690, 1718, 1719
NmuCI	GTSAC	4 cut(s)	106, 119, 641, 874
NspI	RCATGY	2 cut(s)	885, 1900
NspV	TTCGAA	1 cut(s)	393
PagI	TCATGA	1 cut(s)	1501
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	2 cut(s)	610, 969
PdmI	GAANNNNTTC	2 cut(s)	380, 1623
PfeI	GAWTC	3 cut(s)	1154, 1218, 1601
PflFI	GACNNNGTC	1 cut(s)	191
PflMI	CCANNNNNTGG	2 cut(s)	1273, 1727
PinAI	ACCGGT	2 cut(s)	85, 335
PkrI	GCNGC	8 cut(s)	178, 227, 248, 251, 292, 1110, 1688, 1804
PleI	GAGTC	3 cut(s)	107, 116, 449
PpsI	GAGTC	3 cut(s)	107, 116, 449
PpuMI	RGGWCCY	2 cut(s)	1508, 1717
PshBI	ATTAAT	1 cut(s)	1736
Psp1406I	AACGTT	1 cut(s)	429
Psp5II	RGGWCCY	2 cut(s)	1508, 1717
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	1871
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	5 cut(s)	14, 449, 690, 1718, 1719
PspPI	GGNCC	3 cut(s)	346, 1508, 1717
PspPPI	RGGWCCY	2 cut(s)	1508, 1717
PsrI	GAACNNNNNNTAC	2 cut(s)	1423, 1455
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	1802
RsaI	GTAC	2 cut(s)	38, 1515
RsaNI	GTAC	2 cut(s)	37, 1514
RseI	CAYNNNNRTG	6 cut(s)	326, 1045, 1248, 1564, 1635, 1895
SalI	GTCGAC	1 cut(s)	209
SatI	GCNGC	8 cut(s)	177, 226, 247, 250, 291, 1109, 1687, 1803
Sau3AI	GATC	2 cut(s)	1789, 1912
Sau96I	GGNCC	3 cut(s)	346, 1508, 1717
SchI	GAGTC	3 cut(s)	108, 116, 449
ScrFI	CCNGG	6 cut(s)	41, 366, 475, 623, 699, 700
SduI	GDGCHC	2 cut(s)	452, 693
SfaNI	GCATC	1 cut(s)	1531
SfcI	CTRYAG	1 cut(s)	1536
SfuI	TTCGAA	1 cut(s)	393
SgrAI	CRCCGGYG	1 cut(s)	85
SgrDI	CGTCGACG	1 cut(s)	209
SinI	GGWCC	3 cut(s)	346, 1508, 1717
SmaI	CCCGGG	1 cut(s)	700
SmiMI	CAYNNNNRTG	6 cut(s)	326, 1045, 1248, 1564, 1635, 1895
SmlI	CTYRAG	3 cut(s)	1294, 1810, 1949
SmoI	CTYRAG	3 cut(s)	1294, 1810, 1949
Sse9I	AATT	9 cut(s)	395, 521, 999, 1030, 1132, 1348, 1382, 1676, 1722
SspMI	CTAG	3 cut(s)	470, 495, 990
StyD4I	CCNGG	6 cut(s)	39, 364, 473, 621, 697, 698
TaaI	ACNGT	9 cut(s)	208, 574, 634, 647, 788, 1065, 1318, 1579, 1651
TaiI	ACGT	2 cut(s)	432, 1482
TaqI	TCGA	6 cut(s)	210, 393, 479, 866, 983, 1345
TasI	AATT	9 cut(s)	395, 521, 999, 1030, 1132, 1348, 1382, 1676, 1722
TatI	WGTACW	1 cut(s)	1513
TauI	GCSGC	4 cut(s)	179, 249, 252, 293
TfiI	GAWTC	3 cut(s)	1154, 1218, 1601
TscAI	CASTG	1 cut(s)	1177
TseFI	GTSAC	4 cut(s)	106, 119, 641, 874
TseI	GCWGC	4 cut(s)	225, 1108, 1686, 1802
Tsp45I	GTSAC	4 cut(s)	106, 119, 641, 874
TspDTI	ATGAA	8 cut(s)	17, 223, 524, 884, 1260, 1518, 1548, 1697
TspGWI	ACGGA	5 cut(s)	86, 94, 107, 378, 1328
TspMI	CCCGGG	1 cut(s)	698
TspRI	CASTG	1 cut(s)	1177
Tth111I	GACNNNGTC	1 cut(s)	191
Van91I	CCANNNNNTGG	2 cut(s)	1273, 1727
Vha464I	CTTAAG	2 cut(s)	1294, 1949
VpaK11BI	GGWCC	3 cut(s)	346, 1508, 1717
VspI	ATTAAT	1 cut(s)	1736
XapI	RAATTY	1 cut(s)	1348
XbaI	TCTAGA	1 cut(s)	989
XceI	RCATGY	2 cut(s)	885, 1900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	698
XmiI	GTMKAC	2 cut(s)	210, 1742
XmnI	GAANNNNTTC	2 cut(s)	380, 1623
XspI	CTAG	3 cut(s)	470, 495, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.