Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011954

Physical Location & Seq

Genomic Coordinates Forward (+)

24668723 .. 24675698

Gene Structure 6976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1203900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGAACTACAGGTTCCAGAACCTCCTTGGAGCTCCGTACCGAGGAGGCAACGCCGTAATCACCAACAACACCGAGCTAATCTCACCGGTCGGTAACAGAGTCTCCGTCACCGACCTCATCAAATCCCAATCCATAACCCTACCCGTCCAGTCTTCCTCCAACATCTCCCGAATCGCCGCCTCGCCCGACGGCGTCTTTCTCCTCACAGCCGACGACAACCGCCGATGCCTCTTCATCAACCTCCGCCAGCGCGTGGTGCTTCACCGCATTTCCTTCAAAAACTCCGTCAATGCCATCGAATTCAGTCCCAATGGGGCGTTTATCGCGGTCGCCACGGGTAAGTTGGTTCAAATTTGGCGCTGTCCTGGTTTCAAGAAGGAGTTTTTTCCGTTTGAATTGGTTAGGACTTTTGCTGATTGTGATGATAAGGTTGTAGCATTGGATTGGAGCCCGGACTCGAATTATTTGCTTATCGGGTCAAAAGATTTTACTGCTAGGTTGTTCTGTATGAAAAAATTGAAATCAGGCGGGGTTAAAAGGAAGCCATTTATGTTTTTGGGTCATAGAGATACAGTTGTGGGTGTGTTTTTTGGAATTGATAAGAACACGAATAAGGTATGCAATGTTTATACGGTTACCCGCGATTGTTATGTGTTTAGTTGGGGTTTGAGTGACAATGAAGGTGAATCTGATGGAATGGATGTTAAAGAGCCACCCTCACCAGGTACACCGGATGGGGATGCTGACGGTGAAGTTGAAGGTTTTGGAAGTGGTGATTTGAAGAAGAGAAAGGGTTATGAGGGCAGGGAAGGTGACTTGGATGAAGAAGGTGGGTATTTGCGAAACAGGAAATGGGAGTTGTTGGGGAAGAACAATTTTTTGCAGTCCCAGGCGAAGTTGACAGCATGTGATTATCATAGGGGCCTTAATATGTTGGTTGTTGGGTTCTCAAATGGTGTATTTGGGTTATATCAAATGCCTGATTTTGTGTGCTTGCACTTGTTGTCAATATCAAGAGAGAAAATTACCACCGCAGTTTTTAATGAACTTGGAAATTGGCTGACATTTGGGTGTGCGAAACTTGGACAGTTGCTTGTGTGGGAGTGGAAGTCAGAGAGTTATATATTGAAGCAGCAGGGGCATTACTTCGATGTGAATTGTCTTGCTTATTCACCAGATTCGCAACTGTTAGCCACTGGAGCAGATGATAACAAAGTCAAGGTCTGGACTGTTTCATCAGGTTTCTGCTTTATAACATTCTCTGAGCACACTAATGCAATCACCGCACTCCATTTTATGGCTAACAGCCATAGTCTCCTAAGTGCCTCTCTGGACGGGACTGTTCGTGCATGGGATTTGTACCGTTATCGAAATTTTAGAACATTTACCACCCCTGAAACTAGGCAATTTGTTTCACTGGCAGCAGATCAGAGTGGTGAAGTGATTTGTGCTGGAACCCTTGATTCCTTTGAGATCTTTGTTTGGTCTATGAAGACAGGCCGTCTGTTGGATATTCTGAGTGGCCATGAAGGTCCAGTTCACGGTTTGATGTTTTCTCCTACAAATGCAATTTTAGCTTCATCATCATGGGACAGAACAGTTCGGTTGTGGGATGTTTTTGATGGAAAAGGTGCCGTTGAAACATTCACTCATACACATGATGTTCTTACATTGGTTTACCGTCCAGATGGAAAGCAGTTGGCTAGCAGCACATTAGACGGTCAAATTCATTTCTGGGACCCGATTGATGGTTTATTAATGTATACCATTGAGGGCCGTAGGGATATTTCTGGAGGTCGTCTTATGACAGATCGTAGATCAGCTGCCAACTCAAGTTCAGGAAAGTTCTTCACAACCTTATGTTATTCAGCTGATGGGAGTTACATATTAGCTGGAGGAAGTAGCAAATACATCTGCATGTATGATGTTGCTGATCAGGTGTTGCTGCGGAGGTTTCAAATAACTCACAATCTATCTTTGGATGGAGTTCTTGACTTCTTAAACTCAAAGAATATGACAGATGCTGGACCACTGGATTTAATTGACGATGATAACAGTGATATAGAAGAAGGTGTTGATAAACAAACCCGGGGAAAGTTGGGTTATGATTTACCAGGATCCATGCCTAACCGTGGAAGGCCAGTTGTTAGAACAAAATGCTTGAGAATTGCCCCCACTGGTCGGAGCTTCTCAGCCGCAACAACAGAGGGAGTTCTAGTTTATTCTATTGATGATTCTTTTATCTTTGACCCAACTGATCTTGACATAGATGTCACACCTGAGGCTGTTGATGCTGCACTCAATGAAGATAAATTGAGCAAGGCTTTAATCCTCAGTCTCAGATTAAATGAAGACAGTCTAATTAAAAAGTGTATTTTCAAAGTTAGTCCGATAGACATCCCTGCTGTCGTCTCATCAATTCCTTACAGATATTTGCAAAGGTTAATCGAGGCATTAGCAGATCTTTTGGAAAGTTGCCCGCATGTGGAGTTCATTCTTCAGTGGTGTCAGGAACTCTGCAAGGTTCATGGTAACTCTATTCAACAAAACTTTCGAAAGCTGCTTCCTGCTTTAAAATCCCTACAGAAGGCAATAACAAGAACACATCAGGATTTGAAGGAGACCTGTTCTTCCAACGAATATATGCTTCGATATTTATGTTCAGCAAGCTCAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000151 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0010119 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034388 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

894

Amino Acids

99.47

Weight (kDa)

6.07

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	38 - 173	1.1e-14	THOC3 beta-propeller domain
WD40_Prp19	PF24814	42 - 162	8.6e-11	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	43 - 174	4.2e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	93 - 202	2e-08	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	290 - 499	9.6e-16	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	294 - 486	8.8e-24	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	295 - 435	4.2e-14	THOC3 beta-propeller domain
WDR55	PF24796	296 - 580	1.7e-21	WDR55
WD40_CDC20-Fz	PF24807	296 - 537	5.2e-26	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_1st	PF24780	319 - 453	4.3e-06	MABP1/WDR62 first WD40 domain
Beta-prop_WDR3_1st	PF25173	329 - 489	1.5e-24	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	338 - 489	3.3e-24	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	340 - 442	1.7e-10	Echinoderm microtubule-associated protein second beta-propeller
WDR90_beta-prop_4th	PF23342	356 - 448	1.7e-06	WDR90, 4th beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	360 - 457	3e-08	WDR36/Utp21 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	360 - 579	3e-15	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	362 - 487	1.8e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	367 - 531	2.2e-18	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	374 - 495	1.1e-17	WDR3 second beta-propeller domain
WD40	PF00400	377 - 409	5.4e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	378 - 466	6e-09	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	379 - 457	2.9e-06	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	379 - 477	2.9e-07	EIF3I
WD40_WDHD1_1st	PF24817	384 - 464	1.1e-13	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	384 - 500	7e-17	THOC3 beta-propeller domain
WD40	PF00400	416 - 452	2e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	427 - 597	3.2e-15	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	437 - 584	9.2e-13	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	467 - 544	7.1e-10	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	472 - 580	4.9e-17	THOC3 beta-propeller domain
EIF3I	PF24805	474 - 653	7.3e-09	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	476 - 541	6.9e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	476 - 587	4.2e-08	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	478 - 657	2.4e-20	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	483 - 573	2.9e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	491 - 580	3.2e-06	WDR90/POC16, second beta-propeller
WD40_Prp19	PF24814	491 - 653	1e-12	Prp19 WD40 domain
Beta-prop_EML	PF23409	491 - 657	1.8e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	492 - 597	6.7e-17	WDR3 first beta-propeller domain
Beta-prop_WDR75_1st	PF23869	492 - 557	1.9e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_SCAP	PF24017	494 - 591	3.5e-06	SCAP Beta-propeller
WD40	PF00400	501 - 538	2e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	502 - 592	5e-07	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	506 - 593	1e-07	G protein beta WD-40 repeat protein
Utp12	PF04003	783 - 888	5.7e-25	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15440 AT1G15440
fragaria_vesca	FvH4_6g30400 FvH4_6g30400
malus_domestica	MD09G1221400.v1.1 MD17G1203900.v1.1
prunus_persica	Prupe.3G078900_v2.0.a1
pyrus_communis	pycom1094g00080 pycom17g20750
rosa_chinensis	RchiOBHm_Chr2g0136751
rosa_laevigata	RLG00000019569
rosa_multiflora	Rmu_sc0001299.1_g000021
rosa_roxburghii	Rroxscaffold_2G00108100
rosa_rugosa	Rorug02G0332800
rosa_samantha	Rh2AG383600 Rh2BG390300 Rh2CG370100 Rh2DG406900
rosa_wichuraiana	Rw2G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1253
AasI	GACNNNNNNGTC	1 cut(s)	2270
AccB1I	GGYRCC	1 cut(s)	1631
AccB7I	CCANNNNNTGG	2 cut(s)	253, 1297
AccI	GTMKAC	1 cut(s)	1763
AccII	CGCG	3 cut(s)	252, 326, 642
AclWI	GGATC	2 cut(s)	2112, 2125
AcoI	YGGCCR	1 cut(s)	1522
AcsI	RAATTY	4 cut(s)	299, 351, 1372, 1725
AcuI	CTGAAG	1 cut(s)	2483
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	38, 727, 1361
AgeI	ACCGGT	1 cut(s)	85
AhdI	GACNNNNNGTC	1 cut(s)	1500
AjnI	CCWGG	4 cut(s)	364, 721, 888, 2113
AluBI	AGCT	9 cut(s)	32, 76, 1577, 1823, 1871, 1892, 2187, 2560, 2670
AluI	AGCT	9 cut(s)	32, 76, 1577, 1823, 1871, 1892, 2187, 2560, 2670
Alw21I	GWGCWC	2 cut(s)	34, 1269
Alw26I	GTCTC	5 cut(s)	106, 1319, 2342, 2416, 2615
AlwI	GGATC	2 cut(s)	2112, 2125
AlwNI	CAGNNNCTG	1 cut(s)	2024
Ama87I	CYCGRG	1 cut(s)	2088
AoxI	GGCC	5 cut(s)	922, 1498, 1522, 1774, 2138
ApeKI	GCWGC	7 cut(s)	1132, 1421, 1707, 1823, 1945, 2294, 2560
ApoI	RAATTY	4 cut(s)	299, 351, 1372, 1725
ArsI	GACNNNNNNTTYG	4 cut(s)	270, 302, 1206, 1238
AseI	ATTAAT	1 cut(s)	1757
AsiGI	ACCGGT	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	252, 360
AspS9I	GGNCC	5 cut(s)	922, 1532, 1738, 1774, 2027
AsuC2I	CCSGG	3 cut(s)	452, 2089, 2090
AsuII	TTCGAA	1 cut(s)	2554
AsuNHI	GCTAGC	1 cut(s)	1703
AvaI	CYCGRG	1 cut(s)	2088
AvaII	GGWCC	3 cut(s)	1532, 1738, 2027
AxyI	CCTNAGG	1 cut(s)	2280
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BalI	TGGCCA	1 cut(s)	1524
BamHI	GGATCC	1 cut(s)	2117
BanI	GGYRCC	1 cut(s)	1631
BanII	GRGCYC	2 cut(s)	34, 452
BbsI	GAAGAC	3 cut(s)	144, 1499, 2358
Bbv12I	GWGCWC	2 cut(s)	34, 1269
BbvI	GCAGC	7 cut(s)	1144, 1433, 1719, 1810, 1932, 2281, 2547
BccI	CCATC	8 cut(s)	302, 686, 728, 1616, 1682, 1742, 1868, 1976
BceAI	ACGGC	5 cut(s)	38, 205, 1485, 1619, 1761
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BciT130I	CCWGG	4 cut(s)	366, 723, 890, 2115
BclI	TGATCA	1 cut(s)	1933
BcnI	CCSGG	3 cut(s)	452, 2089, 2090
BcoDI	GTCTC	5 cut(s)	106, 1319, 2342, 2416, 2615
BfaI	CTAG	4 cut(s)	495, 1401, 1704, 2216
BfmI	CTRYAG	2 cut(s)	7, 2582
BfoI	RGCGCY	1 cut(s)	361
BglII	AGATCT	2 cut(s)	1473, 2461
BisI	GCNGC	9 cut(s)	177, 1133, 1422, 1708, 1824, 1946, 2196, 2295, 2561
BlsI	GCNGC	9 cut(s)	178, 1134, 1423, 1709, 1825, 1947, 2197, 2296, 2562
Bme1390I	CCNGG	7 cut(s)	366, 452, 723, 890, 2089, 2090, 2115
Bme18I	GGWCC	3 cut(s)	1532, 1738, 2027
BmeRI	GACNNNNNGTC	1 cut(s)	1500
BmeT110I	CYCGRG	1 cut(s)	2088
BmgT120I	GGNCC	5 cut(s)	922, 1532, 1738, 1774, 2027
BmiI	GGNNCC	8 cut(s)	14, 449, 923, 1456, 1633, 1739, 1740, 2119
BmrFI	CCNGG	7 cut(s)	366, 452, 723, 890, 2089, 2090, 2115
BmsI	GCATC	4 cut(s)	215, 730, 2011, 2281
BmtI	GCTAGC	1 cut(s)	1707
BpiI	GAAGAC	3 cut(s)	144, 1499, 2358
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 701, 733
BpmI	CTGGAG	3 cut(s)	1218, 1812, 1914
Bpu10I	CCTNAGC	1 cut(s)	2671
Bpu14I	TTCGAA	1 cut(s)	2554
BpuEI	CTTGAG	2 cut(s)	1816, 2182
BpuMI	CCSGG	3 cut(s)	452, 2089, 2090
BsaBI	GATNNNNATC	1 cut(s)	2396
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	2615
BsaJI	CCNNGG	7 cut(s)	25, 40, 333, 888, 2088, 2089, 2131
BsaWI	WCCGGW	2 cut(s)	85, 730
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 1094, 1124, 2202, 2232
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	7 cut(s)	148, 1201, 1422, 1535, 2037, 2141, 2182
Bse21I	CCTNAGG	1 cut(s)	2280
Bse3DI	GCAATG	1 cut(s)	628
Bse8I	GATNNNNATC	1 cut(s)	2396
BseBI	CCWGG	4 cut(s)	366, 723, 890, 2115
BseDI	CCNNGG	7 cut(s)	25, 40, 333, 888, 2088, 2089, 2131
BseGI	GGATG	7 cut(s)	706, 739, 745, 826, 1618, 1987, 2397
BseJI	GATNNNNATC	1 cut(s)	2396
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	6 cut(s)	1254, 1508, 2205, 2271, 2347, 2353
BseNI	ACTGG	7 cut(s)	148, 1201, 1422, 1535, 2037, 2141, 2182
BseRI	GAGGAG	2 cut(s)	57, 191
BseXI	GCAGC	7 cut(s)	1144, 1433, 1719, 1810, 1932, 2281, 2547
BsgI	GTGCAG	1 cut(s)	2280
Bsh1236I	CGCG	3 cut(s)	252, 326, 642
Bsh1285I	CGRYCG	2 cut(s)	90, 330
BshFI	GGCC	5 cut(s)	924, 1500, 1524, 1776, 2140
BshNI	GGYRCC	1 cut(s)	1631
BshTI	ACCGGT	1 cut(s)	85
BsiEI	CGRYCG	2 cut(s)	90, 330
BsiHKAI	GWGCWC	2 cut(s)	34, 1269
BsiHKCI	CYCGRG	1 cut(s)	2088
BsiSI	CCGG	4 cut(s)	86, 452, 731, 2089
BslFI	GGGAC	5 cut(s)	291, 871, 1351, 1604, 1751
BsmAI	GTCTC	5 cut(s)	106, 1319, 2342, 2416, 2615
BsmBI	CGTCTC	1 cut(s)	2416
BsmFI	GGGAC	5 cut(s)	291, 871, 1351, 1604, 1751
BsnI	GGCC	5 cut(s)	924, 1500, 1524, 1776, 2140
Bso31I	GGTCTC	1 cut(s)	2615
BsoBI	CYCGRG	1 cut(s)	2088
Bsp119I	TTCGAA	1 cut(s)	2554
Bsp1286I	GDGCHC	3 cut(s)	34, 452, 1269
Bsp143I	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
BspANI	GGCC	5 cut(s)	924, 1500, 1524, 1776, 2140
BspCNI	CTCAG	6 cut(s)	1255, 1509, 2204, 2272, 2346, 2352
BspFNI	CGCG	3 cut(s)	252, 326, 642
BspLI	GGNNCC	8 cut(s)	14, 449, 923, 1456, 1633, 1739, 1740, 2119
BspOI	GCTAGC	1 cut(s)	1707
BspPI	GGATC	2 cut(s)	2112, 2125
BspT104I	TTCGAA	1 cut(s)	2554
BspT107I	GGYRCC	1 cut(s)	1631
BspTNI	GGTCTC	1 cut(s)	2615
BsrDI	GCAATG	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	85
BsrI	ACTGG	7 cut(s)	148, 1201, 1422, 1535, 2037, 2141, 2182
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	7 cut(s)	25, 40, 333, 888, 2088, 2089, 2131
BssMI	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
BssNAI	GTATAC	1 cut(s)	1764
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	1764
Bst2UI	CCWGG	4 cut(s)	366, 723, 890, 2115
Bst6I	CTCTTC	2 cut(s)	236, 779
BstACI	GRCGYC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	2554
BstC8I	GCNNGC	5 cut(s)	248, 995, 1705, 2480, 2668
BstDEI	CTNAG	8 cut(s)	1263, 1319, 1517, 2191, 2280, 2333, 2339, 2671
BstDSI	CCRYGG	2 cut(s)	333, 2131
BstEII	GGTNACC	1 cut(s)	634
BstENI	CCTNNNNNAGG	1 cut(s)	2585
BstF5I	GGATG	7 cut(s)	706, 739, 745, 826, 1618, 1987, 2397
BstFNI	CGCG	3 cut(s)	252, 326, 642
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	252, 360
BstKTI	GATC	8 cut(s)	1429, 1476, 1813, 1820, 1936, 2120, 2260, 2464
BstMAI	GTCTC	5 cut(s)	106, 1319, 2342, 2416, 2615
BstMBI	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
BstMCI	CGRYCG	2 cut(s)	90, 330
BstMWI	GCNNNNNNNGC	7 cut(s)	256, 323, 1138, 1199, 1283, 1574, 2291
BstNI	CCWGG	4 cut(s)	366, 723, 890, 2115
BstNSI	RCATGY	3 cut(s)	909, 1921, 2486
BstPI	GGTNACC	1 cut(s)	634
BstSCI	CCNGG	7 cut(s)	364, 450, 721, 888, 2087, 2088, 2113
BstSFI	CTRYAG	2 cut(s)	7, 2582
BstUI	CGCG	3 cut(s)	252, 326, 642
BstV1I	GCAGC	7 cut(s)	1144, 1433, 1719, 1810, 1932, 2281, 2547
BstV2I	GAAGAC	3 cut(s)	144, 1499, 2358
BstX2I	RGATCY	3 cut(s)	1473, 2117, 2461
BstYI	RGATCY	3 cut(s)	1473, 2117, 2461
BstZ17I	GTATAC	1 cut(s)	1764
Bsu36I	CCTNAGG	1 cut(s)	2280
BsuRI	GGCC	5 cut(s)	924, 1500, 1524, 1776, 2140
BtgI	CCRYGG	2 cut(s)	333, 2131
BtsCI	GGATG	7 cut(s)	706, 739, 745, 826, 1618, 1987, 2397
BtsIMutI	CAGTG	6 cut(s)	1194, 1415, 2030, 2062, 2175, 2507
Cac8I	GCNNGC	5 cut(s)	248, 995, 1705, 2480, 2668
CaiI	CAGNNNCTG	1 cut(s)	2024
CfoI	GCGC	2 cut(s)	252, 360
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	5 cut(s)	922, 1532, 1738, 1774, 2027
Cfr9I	CCCGGG	1 cut(s)	2088
CseI	GACGC	1 cut(s)	181
CsiI	ACCWGGT	1 cut(s)	721
Csp6I	GTAC	3 cut(s)	37, 726, 1360
CspAI	ACCGGT	1 cut(s)	85
CviAII	CATG	9 cut(s)	906, 1350, 1526, 1587, 1658, 1918, 2122, 2483, 2528
CviQI	GTAC	3 cut(s)	37, 726, 1360
DdeI	CTNAG	8 cut(s)	1263, 1319, 1517, 2191, 2280, 2333, 2339, 2671
DpnI	GATC	8 cut(s)	1428, 1475, 1812, 1819, 1935, 2119, 2259, 2463
DpnII	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
DraI	TTTAAA	1 cut(s)	2574
DrdI	GACNNNNNNGTC	1 cut(s)	2270
DriI	GACNNNNNGTC	1 cut(s)	1500
DseDI	GACNNNNNNGTC	1 cut(s)	2270
EaeI	YGGCCR	1 cut(s)	1522
Eam1104I	CTCTTC	2 cut(s)	236, 779
Eam1105I	GACNNNNNGTC	1 cut(s)	1500
EarI	CTCTTC	2 cut(s)	236, 779
EciI	GGCGGA	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	2 cut(s)	34, 452
Eco31I	GGTCTC	1 cut(s)	2615
Eco47I	GGWCC	3 cut(s)	1532, 1738, 2027
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	2483
Eco81I	CCTNAGG	1 cut(s)	2280
Eco88I	CYCGRG	1 cut(s)	2088
Eco91I	GGTNACC	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	2585
EcoO109I	RGGNCCY	2 cut(s)	922, 1738
EcoO65I	GGTNACC	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	4 cut(s)	364, 721, 888, 2113
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	2 cut(s)	34, 452
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	2416
FaeI	CATG	9 cut(s)	909, 1353, 1529, 1590, 1661, 1921, 2125, 2486, 2531
FaqI	GGGAC	5 cut(s)	291, 871, 1351, 1604, 1751
FatI	CATG	9 cut(s)	905, 1349, 1525, 1586, 1657, 1917, 2121, 2482, 2527
FauI	CCCGC	3 cut(s)	521, 647, 2487
FbaI	TGATCA	1 cut(s)	1933
FblI	GTMKAC	1 cut(s)	1763
Fnu4HI	GCNGC	9 cut(s)	177, 1133, 1422, 1708, 1824, 1946, 2196, 2295, 2561
FokI	GGATG	7 cut(s)	713, 746, 752, 833, 1625, 1994, 2384
FriOI	GRGCYC	2 cut(s)	34, 452
Fsp4HI	GCNGC	9 cut(s)	177, 1133, 1422, 1708, 1824, 1946, 2196, 2295, 2561
FspBI	CTAG	4 cut(s)	495, 1401, 1704, 2216
GlaI	GCGC	2 cut(s)	251, 359
GluI	GCNGC	9 cut(s)	177, 1133, 1422, 1708, 1824, 1946, 2196, 2295, 2561
GsuI	CTGGAG	3 cut(s)	1218, 1812, 1914
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	5 cut(s)	924, 1500, 1524, 1776, 2140
HapII	CCGG	4 cut(s)	86, 452, 731, 2089
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	252, 360
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	9 cut(s)	909, 1353, 1529, 1590, 1661, 1921, 2125, 2486, 2531
Hin6I	GCGC	2 cut(s)	250, 358
HinP1I	GCGC	2 cut(s)	250, 358
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HinfI	GANTC	7 cut(s)	99, 171, 455, 686, 1178, 1463, 2234
HpaII	CCGG	4 cut(s)	86, 452, 731, 2089
Hpy166II	GTNNAC	5 cut(s)	728, 900, 1540, 1678, 1764
Hpy188I	TCNGA	8 cut(s)	691, 1114, 1264, 1431, 1518, 2184, 2342, 2391
Hpy8I	GTNNAC	5 cut(s)	728, 900, 1540, 1678, 1764
Hpy99I	CGWCG	2 cut(s)	191, 215
HpyF10VI	GCNNNNNNNGC	7 cut(s)	256, 323, 1138, 1199, 1283, 1574, 2291
HpyF3I	CTNAG	8 cut(s)	1263, 1319, 1517, 2191, 2280, 2333, 2339, 2671
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	9 cut(s)	909, 1353, 1529, 1590, 1661, 1921, 2125, 2486, 2531
HspAI	GCGC	2 cut(s)	250, 358
KflI	GGGWCCC	1 cut(s)	1738
Ksp22I	TGATCA	1 cut(s)	1933
Kzo9I	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
LmnI	GCTCC	5 cut(s)	29, 37, 447, 1199, 2184
Lsp1109I	GCAGC	7 cut(s)	1144, 1433, 1719, 1810, 1932, 2281, 2547
LweI	GCATC	4 cut(s)	215, 730, 2011, 2281
MabI	ACCWGGT	1 cut(s)	721
MaeI	CTAG	4 cut(s)	495, 1401, 1704, 2216
MaeIII	GTNAC	8 cut(s)	92, 106, 634, 671, 812, 1880, 2272, 2531
MalI	GATC	8 cut(s)	1428, 1475, 1812, 1819, 1935, 2119, 2259, 2463
MboI	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
MflI	RGATCY	3 cut(s)	1473, 2117, 2461
MhlI	GDGCHC	3 cut(s)	34, 452, 1269
MlsI	TGGCCA	1 cut(s)	1524
MluNI	TGGCCA	1 cut(s)	1524
MlyI	GAGTC	2 cut(s)	108, 449
MmeI	TCCRAC	4 cut(s)	183, 1488, 2162, 2658
Mox20I	TGGCCA	1 cut(s)	1524
MscI	TGGCCA	1 cut(s)	1524
MslI	CAYNNNNRTG	5 cut(s)	1069, 1272, 1585, 1656, 1916
Msp20I	TGGCCA	1 cut(s)	1524
MspA1I	CMGCKG	2 cut(s)	1823, 1871
MspI	CCGG	4 cut(s)	86, 452, 731, 2089
MspR9I	CCNGG	7 cut(s)	366, 452, 723, 890, 2089, 2090, 2115
MvaI	CCWGG	4 cut(s)	366, 723, 890, 2115
MvnI	CGCG	3 cut(s)	252, 326, 642
MwoI	GCNNNNNNNGC	7 cut(s)	256, 323, 1138, 1199, 1283, 1574, 2291
NciI	CCSGG	3 cut(s)	452, 2089, 2090
NdeII	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
NheI	GCTAGC	1 cut(s)	1703
NlaIII	CATG	9 cut(s)	909, 1353, 1529, 1590, 1661, 1921, 2125, 2486, 2531
NlaIV	GGNNCC	8 cut(s)	14, 449, 923, 1456, 1633, 1739, 1740, 2119
NmuCI	GTSAC	4 cut(s)	106, 671, 812, 2272
NspI	RCATGY	3 cut(s)	909, 1921, 2486
NspV	TTCGAA	1 cut(s)	2554
PfeI	GAWTC	5 cut(s)	171, 686, 1178, 1463, 2234
PflFI	GACNNNGTC	1 cut(s)	191
PflMI	CCANNNNNTGG	2 cut(s)	253, 1297
PinAI	ACCGGT	1 cut(s)	85
PkrI	GCNGC	9 cut(s)	178, 1134, 1423, 1709, 1825, 1947, 2197, 2296, 2562
PleI	GAGTC	2 cut(s)	107, 449
PpsI	GAGTC	2 cut(s)	107, 449
PpuMI	RGGWCCY	1 cut(s)	1738
PshBI	ATTAAT	1 cut(s)	1757
PsiI	TTATAA	1 cut(s)	1253
Psp124BI	GAGCTC	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	1738
Psp6I	CCWGG	4 cut(s)	364, 721, 888, 2113
PspEI	GGTNACC	1 cut(s)	634
PspGI	CCWGG	4 cut(s)	364, 721, 888, 2113
PspN4I	GGNNCC	8 cut(s)	14, 449, 923, 1456, 1633, 1739, 1740, 2119
PspPI	GGNCC	5 cut(s)	922, 1532, 1738, 1774, 2027
PspPPI	RGGWCCY	1 cut(s)	1738
PstNI	CAGNNNCTG	1 cut(s)	2024
PsuI	RGATCY	3 cut(s)	1473, 2117, 2461
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	2 cut(s)	1823, 1871
RsaI	GTAC	3 cut(s)	38, 727, 1361
RsaNI	GTAC	3 cut(s)	37, 726, 1360
RseI	CAYNNNNRTG	5 cut(s)	1069, 1272, 1585, 1656, 1916
SacI	GAGCTC	1 cut(s)	34
SatI	GCNGC	9 cut(s)	177, 1133, 1422, 1708, 1824, 1946, 2196, 2295, 2561
Sau3AI	GATC	8 cut(s)	1426, 1473, 1810, 1817, 1933, 2117, 2257, 2461
Sau96I	GGNCC	5 cut(s)	922, 1532, 1738, 1774, 2027
SchI	GAGTC	2 cut(s)	108, 449
ScrFI	CCNGG	7 cut(s)	366, 452, 723, 890, 2089, 2090, 2115
SduI	GDGCHC	3 cut(s)	34, 452, 1269
SexAI	ACCWGGT	1 cut(s)	721
SfaNI	GCATC	4 cut(s)	215, 730, 2011, 2281
SfcI	CTRYAG	2 cut(s)	7, 2582
SfuI	TTCGAA	1 cut(s)	2554
SinI	GGWCC	3 cut(s)	1532, 1738, 2027
SmaI	CCCGGG	1 cut(s)	2090
SmiMI	CAYNNNNRTG	5 cut(s)	1069, 1272, 1585, 1656, 1916
SmlI	CTYRAG	2 cut(s)	1831, 2161
SmoI	CTYRAG	2 cut(s)	1831, 2161
SspMI	CTAG	4 cut(s)	495, 1401, 1704, 2216
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	7 cut(s)	364, 450, 721, 888, 2087, 2088, 2113
StyI	CCWWGG	1 cut(s)	25
TaqI	TCGA	7 cut(s)	297, 458, 1149, 1369, 2448, 2554, 2650
TauI	GCSGC	2 cut(s)	179, 2198
TfiI	GAWTC	5 cut(s)	171, 686, 1178, 1463, 2234
TscAI	CASTG	6 cut(s)	1201, 1422, 2037, 2062, 2182, 2507
TseFI	GTSAC	4 cut(s)	106, 671, 812, 2272
TseI	GCWGC	7 cut(s)	1132, 1421, 1707, 1823, 1945, 2294, 2560
Tsp45I	GTSAC	4 cut(s)	106, 671, 812, 2272
TspGWI	ACGGA	4 cut(s)	24, 94, 274, 378
TspMI	CCCGGG	1 cut(s)	2088
TspRI	CASTG	6 cut(s)	1201, 1422, 2037, 2062, 2182, 2507
Tth111I	GACNNNGTC	1 cut(s)	191
Van91I	CCANNNNNTGG	2 cut(s)	253, 1297
VpaK11BI	GGWCC	3 cut(s)	1532, 1738, 2027
VspI	ATTAAT	1 cut(s)	1757
XagI	CCTNNNNNAGG	1 cut(s)	2585
XapI	RAATTY	4 cut(s)	299, 351, 1372, 1725
XceI	RCATGY	3 cut(s)	909, 1921, 2486
XcmI	CCANNNNNNNNNTGG	2 cut(s)	23, 340
XmaI	CCCGGG	1 cut(s)	2088
XmiI	GTMKAC	1 cut(s)	1763
XspI	CTAG	4 cut(s)	495, 1401, 1704, 2216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.