AT1G15820

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011951
Physical Location & Seq
Reverse (-)
5446462 .. 5447880
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15820.1

Sequence Viewer

Length: 777 bp
ATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCACCGGAGGCAAGAGAGGTGCCACCGCATTGGCAAGCGGCGTAGGCACTGGAGCTCAGAGAGTTGGCAGGAAAACTCTTATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCCCTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCAGGAGATTTCGGGTTCGACCCATTGGGTTTGGGGAAAGACCCGGCTTTTCTGAAATGGTACAGAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTCGTCGGCCAGGCCTGGAGCGGTGTGGCATGGTTTGAAGCTGGAGCCCAGCCAGACGCGATCGCTCCCTTCTCGTTCGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCAAACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCAACGCCATGGTCGAAGACCGCCGAGAATTTCGCGAACTATACCGGCGATCAGGGATACCCCGGTGGGAGATTCTTCGATCCGTTGGGTCTCGCCGGGAAAAACCGCGACGGTGTTTATGAGCCGGACTTTGAGAAGCTGGAGAGGCTGAAATTGGCAGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCATGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGTGA

Protein Analysis

258

Amino Acids

27.52

Weight (kDa)

6.75

Isoelectric Point (pI)

18.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 70 - 246 2.3e-44 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 369
AccII CGCG 3 cut(s) 407, 557, 630
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 8 cut(s) 11, 78, 90, 146, 335, 369, 543, 628
AclWI GGATC 5 cut(s) 166, 179, 304, 353, 596
AcoI YGGCCR 2 cut(s) 316, 355
AcsI RAATTY 1 cut(s) 550
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 744
AgsI TTSAA 2 cut(s) 386, 496
AjnI CCWGG 3 cut(s) 232, 357, 362
AluBI AGCT 5 cut(s) 23, 107, 307, 389, 661
AluI AGCT 5 cut(s) 23, 107, 307, 389, 661
Alw21I GWGCWC 2 cut(s) 109, 766
Alw26I GTCTC 2 cut(s) 19, 617
AlwI GGATC 5 cut(s) 166, 179, 304, 353, 596
Ama87I CYCGRG 1 cut(s) 694
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 4 cut(s) 316, 355, 360, 735
ApeKI GCWGC 4 cut(s) 140, 143, 149, 332
ApoI RAATTY 1 cut(s) 550
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
AsiSI GCGATCGC 1 cut(s) 411
AsuC2I CCSGG 5 cut(s) 275, 500, 585, 619, 739
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 694
BaeI ACNNNNGTAYC 2 cut(s) 571, 604
BamHI GGATCC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 109, 397
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 109, 766
BbvI GCAGC 4 cut(s) 127, 130, 136, 344
BccI CCATC 4 cut(s) 215, 315, 322, 474
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 3 cut(s) 234, 359, 364
BciVI GTATCC 1 cut(s) 572
BcnI CCSGG 5 cut(s) 275, 500, 585, 619, 739
BcoDI GTCTC 2 cut(s) 19, 617
BfuI GTATCC 1 cut(s) 572
BisI GCNGC 6 cut(s) 91, 141, 144, 147, 150, 333
BlpI GCTNAGC 2 cut(s) 153, 303
BlsI GCNGC 6 cut(s) 92, 142, 145, 148, 151, 334
Bme1390I CCNGG 8 cut(s) 234, 275, 359, 364, 500, 585, 619, 739
BmeT110I CYCGRG 1 cut(s) 694
BmiI GGNNCC 4 cut(s) 73, 173, 394, 442
BmrFI CCNGG 8 cut(s) 234, 275, 359, 364, 500, 585, 619, 739
BpiI GAAGAC 1 cut(s) 545
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BpmI CTGGAG 4 cut(s) 123, 385, 411, 683
Bpu1102I GCTNAGC 2 cut(s) 153, 303
BpuMI CCSGG 5 cut(s) 275, 500, 585, 619, 739
BsaI GGTCTC 2 cut(s) 19, 617
BsaJI CCNNGG 3 cut(s) 313, 530, 583
BsaWI WCCGGW 2 cut(s) 17, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 3 cut(s) 234, 359, 364
BseDI CCNNGG 3 cut(s) 313, 530, 583
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 4 cut(s) 43, 122, 167, 294
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 4 cut(s) 127, 130, 136, 344
BseYI CCCAGC 1 cut(s) 396
Bsh1236I CGCG 3 cut(s) 407, 557, 630
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 4 cut(s) 318, 357, 362, 737
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 109, 766
BsiHKCI CYCGRG 1 cut(s) 694
BsiSI CCGG 9 cut(s) 18, 57, 275, 500, 567, 585, 618, 647, 738
BslI CCNNNNNNNGG 1 cut(s) 744
BsmAI GTCTC 2 cut(s) 19, 617
BsnI GGCC 4 cut(s) 318, 357, 362, 737
Bso31I GGTCTC 2 cut(s) 19, 617
BsoBI CYCGRG 1 cut(s) 694
Bsp1286I GDGCHC 3 cut(s) 109, 397, 766
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
Bsp1720I GCTNAGC 2 cut(s) 153, 303
Bsp19I CCATGG 2 cut(s) 313, 530
Bsp68I TCGCGA 1 cut(s) 557
BspACI CCGC 8 cut(s) 11, 78, 90, 146, 335, 369, 543, 628
BspANI GGCC 4 cut(s) 318, 357, 362, 737
BspCNI CTCAG 4 cut(s) 42, 121, 166, 295
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 3 cut(s) 407, 557, 630
BspLI GGNNCC 4 cut(s) 73, 173, 394, 442
BspPI GGATC 5 cut(s) 166, 179, 304, 353, 596
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 2 cut(s) 19, 617
BsrBI CCGCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 3 cut(s) 313, 530, 583
BssMI GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
BssT1I CCWWGG 2 cut(s) 313, 530
Bst2UI CCWGG 3 cut(s) 234, 359, 364
Bst4CI ACNGT 1 cut(s) 635
BstAPI GCANNNNNTGC 1 cut(s) 710
BstC8I GCNNGC 3 cut(s) 88, 227, 702
BstDEI CTNAG 5 cut(s) 29, 108, 153, 159, 303
BstDSI CCRYGG 2 cut(s) 313, 530
BstFNI CGCG 3 cut(s) 407, 557, 630
BstKTI GATC 7 cut(s) 174, 312, 348, 411, 574, 604, 723
BstMAI GTCTC 2 cut(s) 19, 617
BstMBI GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 7 cut(s) 96, 146, 149, 332, 667, 697, 710
BstNI CCWGG 3 cut(s) 234, 359, 364
BstSCI CCNGG 8 cut(s) 232, 273, 357, 362, 498, 583, 617, 737
BstUI CGCG 3 cut(s) 407, 557, 630
BstV1I GCAGC 4 cut(s) 127, 130, 136, 344
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 2 cut(s) 171, 345
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 171, 345
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 4 cut(s) 318, 357, 362, 737
BtgI CCRYGG 2 cut(s) 313, 530
BtgZI GCGATG 2 cut(s) 20, 341
BtsIMutI CAGTG 2 cut(s) 37, 99
BtuMI TCGCGA 1 cut(s) 557
Cac8I GCNNGC 3 cut(s) 88, 227, 702
Cfr10I RCCGGY 1 cut(s) 566
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 292
CviAII CATG 5 cut(s) 314, 378, 457, 531, 715
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 5 cut(s) 29, 108, 153, 159, 303
DpnI GATC 7 cut(s) 173, 311, 347, 410, 573, 603, 722
DpnII GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
EaeI YGGCCR 2 cut(s) 316, 355
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 313, 530
Eco147I AGGCCT 1 cut(s) 362
Eco24I GRGCYC 2 cut(s) 109, 397
Eco31I GGTCTC 2 cut(s) 19, 617
Eco53kI GAGCTC 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 232, 357, 362
EcoT14I CCWWGG 2 cut(s) 313, 530
EcoT38I GRGCYC 2 cut(s) 109, 397
ErhI CCWWGG 2 cut(s) 313, 530
FaeI CATG 5 cut(s) 317, 381, 460, 534, 718
FaiI YATR 7 cut(s) 315, 379, 458, 532, 564, 642, 716
FatI CATG 5 cut(s) 313, 377, 456, 530, 714
Fnu4HI GCNGC 6 cut(s) 91, 141, 144, 147, 150, 333
FriOI GRGCYC 2 cut(s) 109, 397
Fsp4HI GCNGC 6 cut(s) 91, 141, 144, 147, 150, 333
GluI GCNGC 6 cut(s) 91, 141, 144, 147, 150, 333
GsaI CCCAGC 1 cut(s) 400
GsuI CTGGAG 4 cut(s) 123, 385, 411, 683
HaeIII GGCC 4 cut(s) 318, 357, 362, 737
HapII CCGG 9 cut(s) 18, 57, 275, 500, 567, 585, 618, 647, 738
HgaI GACGC 1 cut(s) 413
Hin1II CATG 5 cut(s) 317, 381, 460, 534, 718
HinfI GANTC 2 cut(s) 503, 594
HpaII CCGG 9 cut(s) 18, 57, 275, 500, 567, 585, 618, 647, 738
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 111, 285
Hpy188III TCNNGA 2 cut(s) 18, 556
Hpy99I CGWCG 2 cut(s) 356, 635
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 1 cut(s) 635
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 146, 149, 332, 667, 697, 710
HpyF3I CTNAG 5 cut(s) 29, 108, 153, 159, 303
Hsp92II CATG 5 cut(s) 317, 381, 460, 534, 718
Kpn2I TCCGGA 1 cut(s) 17
Kzo9I GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
LmnI GCTCC 5 cut(s) 20, 104, 366, 392, 418
Lsp1109I GCAGC 4 cut(s) 127, 130, 136, 344
MalI GATC 7 cut(s) 173, 311, 347, 410, 573, 603, 722
MbiI CCGCTC 1 cut(s) 369
MboI GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
MboII GAAGA 5 cut(s) 36, 340, 484, 550, 589
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 2 cut(s) 171, 345
MhlI GDGCHC 3 cut(s) 109, 397, 766
MluCI AATT 3 cut(s) 446, 550, 674
MnlI CCTC 9 cut(s) 38, 53, 62, 62, 292, 660, 690, 727, 765
MroI TCCGGA 1 cut(s) 17
MseI TTAA 2 cut(s) 183, 687
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 9 cut(s) 18, 57, 275, 500, 567, 585, 618, 647, 738
MspR9I CCNGG 8 cut(s) 234, 275, 359, 364, 500, 585, 619, 739
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 3 cut(s) 234, 359, 364
MvnI CGCG 3 cut(s) 407, 557, 630
MwoI GCNNNNNNNGC 7 cut(s) 96, 146, 149, 332, 667, 697, 710
NciI CCSGG 5 cut(s) 275, 500, 585, 619, 739
NcoI CCATGG 2 cut(s) 313, 530
NdeII GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
NlaIII CATG 5 cut(s) 317, 381, 460, 534, 718
NlaIV GGNNCC 4 cut(s) 73, 173, 394, 442
NmeAIII GCCGAG 1 cut(s) 571
NruI TCGCGA 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 694
PceI AGGCCT 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 2 cut(s) 503, 594
PkrI GCNGC 6 cut(s) 92, 142, 145, 148, 151, 334
Ple19I CGATCG 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 3 cut(s) 232, 357, 362
PspFI CCCAGC 1 cut(s) 396
PspGI CCWGG 3 cut(s) 232, 357, 362
PspN4I GGNNCC 4 cut(s) 73, 173, 394, 442
PspXI VCTCGAGB 1 cut(s) 694
PsuI RGATCY 2 cut(s) 171, 345
PvuI CGATCG 1 cut(s) 411
RgaI GCGATCGC 1 cut(s) 411
RruI TCGCGA 1 cut(s) 557
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 2 cut(s) 183, 687
SatI GCNGC 6 cut(s) 91, 141, 144, 147, 150, 333
Sau3AI GATC 7 cut(s) 171, 309, 345, 408, 571, 601, 720
ScrFI CCNGG 8 cut(s) 234, 275, 359, 364, 500, 585, 619, 739
SduI GDGCHC 3 cut(s) 109, 397, 766
SetI ASST 7 cut(s) 25, 73, 109, 190, 309, 391, 663
SfaAI GCGATCGC 1 cut(s) 411
Sfr274I CTCGAG 1 cut(s) 694
SgfI GCGATCGC 1 cut(s) 411
SlaI CTCGAG 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
Sse9I AATT 3 cut(s) 446, 550, 674
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 8 cut(s) 11, 78, 90, 146, 335, 369, 543, 628
SstI GAGCTC 1 cut(s) 109
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 8 cut(s) 232, 273, 357, 362, 498, 583, 617, 737
StyI CCWWGG 2 cut(s) 313, 530
TaaI ACNGT 1 cut(s) 635
TaqI TCGA 6 cut(s) 219, 249, 486, 536, 600, 695
TasI AATT 3 cut(s) 446, 550, 674
TauI GCSGC 2 cut(s) 93, 149
TfiI GAWTC 2 cut(s) 503, 594
Tru1I TTAA 2 cut(s) 183, 687
Tru9I TTAA 2 cut(s) 183, 687
TscAI CASTG 2 cut(s) 37, 106
TseI GCWGC 4 cut(s) 140, 143, 149, 332
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 2 cut(s) 37, 106
XapI RAATTY 1 cut(s) 550
XhoI CTCGAG 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.