MD15G1411600.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
51099008 .. 51100141
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1411600.v1.1.491

Sequence Viewer

Length: 774 bp
ATGGCGGCAACCACCGGTGCAGTGCTCAACGGGTTGAACTCGGCAGCTTTCTTATGCGGAGGCAAGAGAAGTCAGGCCTTGCTCTCCGCTGCCACTGTCGGAAGCAGGGCTGGAGGTCCTGCTCCTAAGAGGTTAATTGTGGTTGCTGCTGCCGCAAAGAAGTCTTGGATCCCGGGGGTTAAAGCCGGCGGCAACTTCACCAATCCCGAGTGGCTCGATGGCTCGCTTCCAGGGGACTACGGCTTTGACCCACTAGGACTCGGCAGGGACCCGGCGTTCCTCAAGTGGTACAGAGAGGCGGAGCTCATCCACGGCCGGTGGGCAATGACCGCGGTCGTCGGCATCTTTGTTGGCCAGGCCTGGAGCGGTATCCCATGGTTCCAAGCCGGAGCTGACCCTGGCGCCATAGCACCCTTCTCCTTCGGCACACTGCTCGGCACTCAGCTCTTGCTCATGGGTTGGGTGGAAAGCAAAAGATGGGTGGACTTCTACAACCCCGAGTCCCAGTCCGTCGAGTGGGCGACACCTTGGTCCAAGACTGCGGAGAACTTTGCCAACGCCACCGGAGAGCAAGGCTACCCGGGAGGCAAGTTCTTCGACCCCTTGGGGCTTGCCGGCTCCATCCAGGACGGGGTTTACGTTCCCGATAGCGAAAAGTTGGAGAGACTGAAACTGGCTGAGATTAAGCATGCAAGGATTGCTATGTTGGCTATGCTTATATTCTACTTTGAAGCTGGACAAGGAAAGACACCCCTTGGTGCTCTTGGCTTGTAA

Protein Analysis

258

Amino Acids

27.28

Weight (kDa)

7.79

Isoelectric Point (pI)

25.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 69 - 245 9.1e-44 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 366
AccII CGCG 1 cut(s) 332
AclWI GGATC 2 cut(s) 163, 176
AcoI YGGCCR 2 cut(s) 313, 352
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 516, 631
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 2 cut(s) 37, 731
AjnI CCWGG 5 cut(s) 229, 354, 359, 397, 624
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 5 cut(s) 47, 304, 392, 445, 734
AluI AGCT 5 cut(s) 47, 304, 392, 445, 734
Alw21I GWGCWC 3 cut(s) 27, 306, 763
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 2 cut(s) 163, 176
Ama87I CYCGRG 4 cut(s) 172, 206, 497, 580
AoxI GGCC 4 cut(s) 75, 313, 352, 357
ApeKI GCWGC 4 cut(s) 44, 89, 146, 149
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AsiGI ACCGGT 1 cut(s) 14
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 3 cut(s) 116, 268, 531
AsuC2I CCSGG 5 cut(s) 173, 174, 272, 581, 582
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 4 cut(s) 172, 206, 497, 580
AvaII GGWCC 3 cut(s) 116, 268, 531
BalI TGGCCA 1 cut(s) 354
BamHI GGATCC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 3 cut(s) 27, 306, 763
BbvI GCAGC 4 cut(s) 56, 76, 133, 136
BccI CCATC 3 cut(s) 212, 471, 629
BceAI ACGGC 2 cut(s) 256, 328
BcgI CGANNNNNNTGC 4 cut(s) 415, 449, 577, 611
BciT130I CCWGG 5 cut(s) 231, 356, 361, 399, 626
BciVI GTATCC 1 cut(s) 380
BcnI CCSGG 5 cut(s) 173, 174, 272, 581, 582
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 405
BfuI GTATCC 1 cut(s) 380
BisI GCNGC 7 cut(s) 6, 45, 90, 147, 150, 153, 190
BlsI GCNGC 7 cut(s) 7, 46, 91, 148, 151, 154, 191
Bme18I GGWCC 3 cut(s) 116, 268, 531
BmeT110I CYCGRG 4 cut(s) 172, 206, 497, 580
BmgT120I GGNCC 3 cut(s) 116, 268, 531
BmiI GGNNCC 6 cut(s) 170, 269, 270, 380, 403, 619
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 499
BoxI GACNNNNGTC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 132, 382
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 5 cut(s) 173, 174, 272, 581, 582
BsaHI GRCGYC 1 cut(s) 402
BsaWI WCCGGW 2 cut(s) 14, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 631
Bse118I RCCGGY 4 cut(s) 14, 185, 315, 614
Bse1I ACTGG 2 cut(s) 505, 678
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 5 cut(s) 231, 356, 361, 399, 626
BseGI GGATG 2 cut(s) 306, 621
BseLI CCNNNNNNNGG 2 cut(s) 516, 631
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 455, 669
BseNI ACTGG 2 cut(s) 505, 678
BseX3I CGGCCG 1 cut(s) 313
BseXI GCAGC 4 cut(s) 56, 76, 133, 136
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 2 cut(s) 316, 336
BshFI GGCC 4 cut(s) 77, 315, 354, 359
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 14
BsiEI CGRYCG 2 cut(s) 316, 336
BsiHKAI GWGCWC 3 cut(s) 27, 306, 763
BsiHKCI CYCGRG 4 cut(s) 172, 206, 497, 580
BsiSI CCGG 9 cut(s) 15, 173, 186, 272, 316, 387, 564, 581, 615
BslFI GGGAC 3 cut(s) 248, 281, 487
BslI CCNNNNNNNGG 2 cut(s) 516, 631
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 3 cut(s) 248, 281, 487
BsnI GGCC 4 cut(s) 77, 315, 354, 359
BsoBI CYCGRG 4 cut(s) 172, 206, 497, 580
Bsp1286I GDGCHC 3 cut(s) 27, 306, 763
Bsp143I GATC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 374
BspANI GGCC 4 cut(s) 77, 315, 354, 359
BspCNI CTCAG 2 cut(s) 454, 670
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 6 cut(s) 170, 269, 270, 380, 403, 619
BspPI GGATC 2 cut(s) 163, 176
BspT107I GGYRCC 1 cut(s) 401
BsrBI CCGCTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 4 cut(s) 14, 185, 315, 614
BsrI ACTGG 2 cut(s) 505, 678
BssAI RCCGGY 4 cut(s) 14, 185, 315, 614
BssMI GATC 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 4 cut(s) 374, 527, 603, 754
Bst2UI CCWGG 5 cut(s) 231, 356, 361, 399, 626
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 402
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 5 cut(s) 187, 224, 612, 616, 690
BstDEI CTNAG 3 cut(s) 126, 441, 678
BstDSI CCRYGG 3 cut(s) 310, 330, 374
BstF5I GGATG 2 cut(s) 306, 621
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 1 cut(s) 168
BstMCI CGRYCG 2 cut(s) 316, 336
BstMWI GCNNNNNNNGC 4 cut(s) 152, 329, 698, 707
BstNI CCWGG 5 cut(s) 231, 356, 361, 399, 626
BstNSI RCATGY 1 cut(s) 692
BstPAI GACNNNNGTC 1 cut(s) 332
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 4 cut(s) 56, 76, 133, 136
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 313
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 4 cut(s) 77, 315, 354, 359
BtgI CCRYGG 3 cut(s) 310, 330, 374
BtsCI GGATG 2 cut(s) 306, 621
BtsI GCAGTG 2 cut(s) 27, 428
BtsIMutI CAGTG 3 cut(s) 27, 93, 428
Cac8I GCNNGC 5 cut(s) 187, 224, 612, 616, 690
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 4 cut(s) 14, 185, 315, 614
Cfr13I GGNCC 3 cut(s) 116, 268, 531
Cfr42I CCGCGG 1 cut(s) 333
Cfr9I CCCGGG 2 cut(s) 172, 580
Csp6I GTAC 1 cut(s) 289
CspAI ACCGGT 1 cut(s) 14
CviAII CATG 3 cut(s) 375, 454, 689
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 3 cut(s) 126, 441, 678
DinI GGCGCC 1 cut(s) 403
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
DrdI GACNNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 2 cut(s) 313, 352
EagI CGGCCG 1 cut(s) 313
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 304
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 4 cut(s) 374, 527, 603, 754
Eco147I AGGCCT 2 cut(s) 77, 359
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 3 cut(s) 116, 268, 531
Eco52I CGGCCG 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 304
Eco88I CYCGRG 4 cut(s) 172, 206, 497, 580
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 2 cut(s) 116, 268
EcoRII CCWGG 5 cut(s) 229, 354, 359, 397, 624
EcoT14I CCWWGG 4 cut(s) 374, 527, 603, 754
EcoT38I GRGCYC 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
ErhI CCWWGG 4 cut(s) 374, 527, 603, 754
FaeI CATG 3 cut(s) 378, 457, 692
FaiI YATR 8 cut(s) 55, 376, 407, 455, 690, 704, 713, 719
FaqI GGGAC 3 cut(s) 248, 281, 487
FatI CATG 3 cut(s) 374, 453, 688
Fnu4HI GCNGC 7 cut(s) 6, 45, 90, 147, 150, 153, 190
FokI GGATG 2 cut(s) 293, 608
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 7 cut(s) 6, 45, 90, 147, 150, 153, 190
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 403
GluI GCNGC 7 cut(s) 6, 45, 90, 147, 150, 153, 190
GsuI CTGGAG 2 cut(s) 132, 382
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 4 cut(s) 77, 315, 354, 359
HapII CCGG 9 cut(s) 15, 173, 186, 272, 316, 387, 564, 581, 615
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 3 cut(s) 378, 457, 692
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HinfI GANTC 2 cut(s) 258, 500
HpaII CCGG 9 cut(s) 15, 173, 186, 272, 316, 387, 564, 581, 615
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 484, 637
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 2 cut(s) 206, 644
Hpy8I GTNNAC 2 cut(s) 484, 637
Hpy99I CGWCG 2 cut(s) 341, 515
HpyAV CCTTC 2 cut(s) 424, 430
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 2 cut(s) 20, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 329, 698, 707
HpyF3I CTNAG 3 cut(s) 126, 441, 678
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 3 cut(s) 378, 457, 692
HspAI GCGC 1 cut(s) 402
KasI GGCGCC 1 cut(s) 401
KflI GGGWCCC 1 cut(s) 268
KroI GCCGGC 2 cut(s) 185, 614
KroNI GCCGGC 2 cut(s) 187, 616
KspI CCGCGG 1 cut(s) 333
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 5 cut(s) 127, 301, 363, 389, 623
Lsp1109I GCAGC 4 cut(s) 56, 76, 133, 136
LweI GCATC 1 cut(s) 351
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 639
MalI GATC 1 cut(s) 170
MbiI CCGCTC 1 cut(s) 366
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 586
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 3 cut(s) 27, 306, 763
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 354
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 2 cut(s) 252, 509
MmeI TCCRAC 2 cut(s) 79, 639
MnlI CCTC 6 cut(s) 53, 107, 123, 289, 290, 578
Mox20I TGGCCA 1 cut(s) 354
MroNI GCCGGC 2 cut(s) 185, 614
MscI TGGCCA 1 cut(s) 354
MseI TTAA 3 cut(s) 134, 180, 684
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 89, 332
MspI CCGG 9 cut(s) 15, 173, 186, 272, 316, 387, 564, 581, 615
MvaI CCWGG 5 cut(s) 231, 356, 361, 399, 626
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 4 cut(s) 152, 329, 698, 707
NaeI GCCGGC 2 cut(s) 187, 616
NarI GGCGCC 1 cut(s) 402
NciI CCSGG 5 cut(s) 173, 174, 272, 581, 582
NcoI CCATGG 1 cut(s) 374
NdeII GATC 1 cut(s) 168
NgoMIV GCCGGC 2 cut(s) 185, 614
NlaIII CATG 3 cut(s) 378, 457, 692
NlaIV GGNNCC 6 cut(s) 170, 269, 270, 380, 403, 619
NmeAIII GCCGAG 3 cut(s) 20, 240, 414
NspI RCATGY 1 cut(s) 692
PaeI GCATGC 1 cut(s) 692
PceI AGGCCT 2 cut(s) 77, 359
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdiI GCCGGC 2 cut(s) 187, 616
PfoI TCCNGGA 1 cut(s) 624
PinAI ACCGGT 1 cut(s) 14
PkrI GCNGC 7 cut(s) 7, 46, 91, 148, 151, 154, 191
PleI GAGTC 2 cut(s) 252, 508
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 2 cut(s) 252, 508
PpuMI RGGWCCY 2 cut(s) 116, 268
PshAI GACNNNNGTC 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 2 cut(s) 116, 268
Psp6I CCWGG 5 cut(s) 229, 354, 359, 397, 624
PspGI CCWGG 5 cut(s) 229, 354, 359, 397, 624
PspN4I GGNNCC 6 cut(s) 170, 269, 270, 380, 403, 619
PspPI GGNCC 3 cut(s) 116, 268, 531
PspPPI RGGWCCY 2 cut(s) 116, 268
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SacI GAGCTC 1 cut(s) 306
SacII CCGCGG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 134, 180, 684
SatI GCNGC 7 cut(s) 6, 45, 90, 147, 150, 153, 190
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 3 cut(s) 116, 268, 531
SchI GAGTC 2 cut(s) 252, 509
SduI GDGCHC 3 cut(s) 27, 306, 763
SetI ASST 9 cut(s) 49, 118, 134, 306, 394, 447, 529, 642, 736
SfaNI GCATC 1 cut(s) 351
SfoI GGCGCC 1 cut(s) 403
Sfr303I CCGCGG 1 cut(s) 333
SgrAI CRCCGGYG 1 cut(s) 14
SgrBI CCGCGG 1 cut(s) 333
SinI GGWCC 3 cut(s) 116, 268, 531
SmaI CCCGGG 2 cut(s) 174, 582
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SphI GCATGC 1 cut(s) 692
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 2 cut(s) 77, 359
SspDI GGCGCC 1 cut(s) 401
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 1 cut(s) 306
StuI AGGCCT 2 cut(s) 77, 359
StyI CCWWGG 4 cut(s) 374, 527, 603, 754
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 642
TaqI TCGA 3 cut(s) 216, 513, 597
TasI AATT 1 cut(s) 135
TauI GCSGC 3 cut(s) 8, 155, 192
Tru1I TTAA 3 cut(s) 134, 180, 684
Tru9I TTAA 3 cut(s) 134, 180, 684
TscAI CASTG 3 cut(s) 27, 100, 435
TseI GCWGC 4 cut(s) 44, 89, 146, 149
TspGWI ACGGA 1 cut(s) 499
TspMI CCCGGG 2 cut(s) 172, 580
TspRI CASTG 3 cut(s) 27, 100, 435
VpaK11BI GGWCC 3 cut(s) 116, 268, 531
XceI RCATGY 1 cut(s) 692
XmaI CCCGGG 2 cut(s) 172, 580
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.