Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011951

Physical Location & Seq

Genomic Coordinates Reverse (-)

10939798 .. 10941325

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAATTGTTGGTTGAGCTTGGTGTGGTAGTTTTGGTGGTGGTGAAGGTAGAGATATGGGGGATTAGCAATGAGGAGTTGAGAGGCAGTAGCCTGGAGAAGTGGGTCTGGGAATGGTTGTGGTGGAGGGTAAGGGTGGTCGAATTGGGTGTAATGACAAATGGAGTAGGAGGTGGTGCAGCAACAAGTAGTAGTGCCGGAGTTGACCGCAGTGCAATATCACCCTTCTCCTTCGGCTCCCTTCTTGGGACTCAACTCCTGCTCATGGGTTGGGTGAAAAGAAAAAAATGGGTAGACTTCTACAACCCTGAGTTACAGTCCGTGGAGTGGGCTACAACATGGTCCAAGACTGCCGAGAACTTTTCCAACGCCATCGGAGAGCAAGGCTACTCGGGAGGCAAGTTCTTCGATCCCTTGGGCTTCGCCCACTCCATCAAGGACGGAGTTTACATCCCGAACACTAAAAAGTTGGAGAGACTGAAGTTGGCTGAGATCAAGCATGCAAGGCTTGCTATGGTGGCTATGCTTATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

179

Amino Acids

19.88

Weight (kDa)

7.94

Isoelectric Point (pI)

20.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	66 - 178	2.6e-11	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15820
fragaria_vesca	FvH4_5g30940
malus_domestica	MD08G1220900.v1.1 MD15G1411600.v1.1
prunus_persica	Prupe.1G557800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226291
rosa_laevigata	RLG00000001754 RLG00000027365
rosa_multiflora	Rmu_co8464105.1_g000001 Rmu_sc0002055.1_g000006 Rmu_sc0003972.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233080
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383200 Rh7BG370100 Rh7CG402900 Rh7DG381500
rosa_wichuraiana	Rw0G017540 Rw0G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	246, 265, 327
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	55, 213, 286
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	380, 440
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	469
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	321, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 265, 327
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	321, 414
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	246, 265, 327
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	300, 480
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	246, 265, 327
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	409, 492
BspACI	CCGC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	301, 481
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	321, 414
BssMI	GATC	2 cut(s)	409, 492
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	501, 510
BstDEI	CTNAG	2 cut(s)	309, 489
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	2 cut(s)	412, 495
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	409, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	505, 509, 518
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	501, 510
Cfr13I	GGNCC	1 cut(s)	342
CviAII	CATG	3 cut(s)	265, 339, 500
CviJI	RGCY	9 cut(s)	19, 93, 237, 332, 387, 420, 488, 508, 521
CviKI_1	RGCY	9 cut(s)	19, 93, 237, 332, 387, 420, 488, 508, 521
DdeI	CTNAG	2 cut(s)	309, 489
DpnI	GATC	2 cut(s)	411, 494
DpnII	GATC	2 cut(s)	409, 492
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	268, 342, 503
FaiI	YATR	6 cut(s)	58, 266, 340, 501, 515, 524
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	264, 338, 499
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	116
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	3 cut(s)	268, 342, 503
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	3 cut(s)	55, 213, 286
Hpy166II	GTNNAC	3 cut(s)	205, 295, 448
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	393, 454
Hpy8I	GTNNAC	3 cut(s)	205, 295, 448
HpyAV	CCTTC	4 cut(s)	40, 235, 241, 251
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	179, 215, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	505, 509, 518
HpyF3I	CTNAG	2 cut(s)	309, 489
Hsp92II	CATG	3 cut(s)	268, 342, 503
Kzo9I	GATC	2 cut(s)	409, 492
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	6 cut(s)	80, 94, 107, 211, 272, 321
Lsp1109I	GCAGC	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	2 cut(s)	411, 494
MboI	GATC	2 cut(s)	409, 492
MboII	GAAGA	1 cut(s)	397
MluCI	AATT	2 cut(s)	5, 143
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	390, 450
MnlI	CCTC	5 cut(s)	67, 77, 120, 164, 389
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	505, 509, 518
NdeII	GATC	2 cut(s)	409, 492
NlaIII	CATG	3 cut(s)	268, 342, 503
NlaIV	GGNNCC	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	379
NspI	RCATGY	1 cut(s)	503
PaeI	GCATGC	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	342
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	409, 492
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	95
SetI	ASST	3 cut(s)	21, 51, 175
SinI	GGWCC	1 cut(s)	342
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	2 cut(s)	5, 143
SsiI	CCGC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	141, 408
TasI	AATT	2 cut(s)	5, 143
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	179
TspGWI	ACGGA	2 cut(s)	310, 456
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	342
XceI	RCATGY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.