Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011951

Physical Location & Seq

Genomic Coordinates Reverse (-)

28364908 .. 28366375

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1220900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGGCAACCACCGGTGCAGTGCTCAACGGGTTGAACTCGGCGGCCTTCTTATGTGGAGGCAAGAGAAGTCAGGCCTTGCTCTCTGCTGCCACCGTTGGAAGCAAGGTTGGCGGTGCTTCTCCTACTCCTAAGAGGTTCATTGTGGTTGCTGCTGCGGCAAAGAAGTCTTGGATCCCGGCGGTTAAAGGCGGCGGCAACTTCATCGACCCCGAGTGGCTCGATGGCTCGCTTCCAGGTGACTACGGTTTTGATCCACTAGGACTAGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGAGAGGCGGAGCTCATCCACGGCCGGTGGGCAATGGCGGCAGTCGTTGGTATCTTTGTTGGCCAGGCCTGGAGTGGTATCCCATGGTTCGAAGCCGGAGCTGACCCCAGTGCTATCTCACCCTTCTCCTTCGGCTCACTGCTCGGCACTCAGCTCTTGCTCATGGGATGGGTGGAAAGCAAGAGATGGGTGGACTTCTACAACCCTGAGTCCCAGTCCGTCGAGTGGGCCACACCTTGGTCCAAGACCTCGGAGAACTTCGCCAACTCCACCGGAGAGCAAGGCTACCCGGGTGGCAAGTTCTTCGACCCCTTGGGCTTCGCCGGCTCCATCCAGGACGGGGTTTACGTTCCAGACAGCGAAAAGTTGGAGAGACTGAAACTGGCTGAGATTAAGCATGCAAGGCTTGCTATGGTGGCTATGCTCATTTTCTACTTTGAAGCTGGGCAAGGAAAGACGCCCCTTGGTGCCCTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

260

Amino Acids

27.54

Weight (kDa)

6.16

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	71 - 247	1.1e-44	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15820
fragaria_vesca	FvH4_5g30940
malus_domestica	MD08G1220900.v1.1 MD15G1411600.v1.1
prunus_persica	Prupe.1G557800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226291
rosa_laevigata	RLG00000001754 RLG00000027365
rosa_multiflora	Rmu_co8464105.1_g000001 Rmu_sc0002055.1_g000006 Rmu_sc0003972.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233080
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383200 Rh7BG370100 Rh7CG402900 Rh7DG381500
rosa_wichuraiana	Rw0G017540 Rw0G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	764
AccB7I	CCANNNNNTGG	1 cut(s)	534
AciI	CCGC	9 cut(s)	5, 44, 114, 158, 182, 192, 195, 305, 335
AclWI	GGATC	3 cut(s)	169, 182, 248
AcoI	YGGCCR	2 cut(s)	319, 358
AcyI	GRCGYC	1 cut(s)	755
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	522, 534, 637
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	37, 737
AjnI	CCWGG	4 cut(s)	235, 360, 365, 630
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	310, 398, 451, 740
AluI	AGCT	4 cut(s)	310, 398, 451, 740
Alw21I	GWGCWC	2 cut(s)	27, 312
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	3 cut(s)	169, 182, 248
Ama87I	CYCGRG	2 cut(s)	212, 586
AoxI	GGCC	6 cut(s)	45, 75, 319, 358, 363, 525
ApeKI	GCWGC	3 cut(s)	89, 152, 155
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AsiGI	ACCGGT	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	274, 525, 537
AsuC2I	CCSGG	4 cut(s)	179, 278, 587, 588
AsuHPI	GGTGA	2 cut(s)	251, 408
AsuII	TTCGAA	1 cut(s)	387
AvaI	CYCGRG	2 cut(s)	212, 586
AvaII	GGWCC	2 cut(s)	274, 537
BaeGI	GKGCMC	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	27, 312
BbvI	GCAGC	3 cut(s)	76, 139, 142
BccI	CCATC	4 cut(s)	218, 459, 477, 635
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	4 cut(s)	187, 221, 583, 617
BciT130I	CCWGG	4 cut(s)	237, 362, 367, 632
BciVI	GTATCC	1 cut(s)	386
BcnI	CCSGG	4 cut(s)	179, 278, 587, 588
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	2 cut(s)	260, 266
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	9 cut(s)	6, 45, 90, 153, 156, 159, 193, 196, 336
BlsI	GCNGC	9 cut(s)	7, 46, 91, 154, 157, 160, 194, 197, 337
Bme1390I	CCNGG	8 cut(s)	179, 237, 278, 362, 367, 587, 588, 632
Bme18I	GGWCC	2 cut(s)	274, 537
BmeT110I	CYCGRG	2 cut(s)	212, 586
BmgT120I	GGNCC	3 cut(s)	274, 525, 537
BmiI	GGNNCC	4 cut(s)	176, 276, 625, 766
BmrFI	CCNGG	8 cut(s)	179, 237, 278, 362, 367, 587, 588, 632
BmrI	ACTGGG	2 cut(s)	399, 505
BmuI	ACTGGG	2 cut(s)	399, 505
BpmI	CTGGAG	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	4 cut(s)	179, 278, 587, 588
BsaHI	GRCGYC	1 cut(s)	755
BsaJI	CCNNGG	8 cut(s)	316, 380, 533, 546, 586, 609, 760, 769
BsaWI	WCCGGW	2 cut(s)	14, 569
Bsc4I	CCNNNNNNNGG	3 cut(s)	522, 534, 637
Bse118I	RCCGGY	3 cut(s)	14, 321, 620
Bse1I	ACTGG	3 cut(s)	405, 511, 684
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	4 cut(s)	237, 362, 367, 632
BseDI	CCNNGG	8 cut(s)	316, 380, 533, 546, 586, 609, 760, 769
BseGI	GGATG	3 cut(s)	312, 470, 627
BseLI	CCNNNNNNNGG	3 cut(s)	522, 534, 637
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	461, 495, 675
BseNI	ACTGG	3 cut(s)	405, 511, 684
BseSI	GKGCMC	1 cut(s)	769
BseX3I	CGGCCG	1 cut(s)	319
BseXI	GCAGC	3 cut(s)	76, 139, 142
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	6 cut(s)	47, 77, 321, 360, 365, 527
BshNI	GGYRCC	1 cut(s)	764
BshTI	ACCGGT	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	27, 312
BsiHKCI	CYCGRG	2 cut(s)	212, 586
BsiSI	CCGG	8 cut(s)	15, 179, 278, 322, 393, 570, 587, 621
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	522, 534, 637
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	6 cut(s)	47, 77, 321, 360, 365, 527
BsoBI	CYCGRG	2 cut(s)	212, 586
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	3 cut(s)	27, 312, 769
Bsp143I	GATC	2 cut(s)	174, 253
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	9 cut(s)	5, 44, 114, 158, 182, 192, 195, 305, 335
BspANI	GGCC	6 cut(s)	47, 77, 321, 360, 365, 527
BspCNI	CTCAG	3 cut(s)	460, 496, 676
BspLI	GGNNCC	4 cut(s)	176, 276, 625, 766
BspPI	GGATC	3 cut(s)	169, 182, 248
BspT104I	TTCGAA	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	3 cut(s)	14, 321, 620
BsrI	ACTGG	3 cut(s)	405, 511, 684
BssAI	RCCGGY	3 cut(s)	14, 321, 620
BssECI	CCNNGG	8 cut(s)	316, 380, 533, 546, 586, 609, 760, 769
BssMI	GATC	2 cut(s)	174, 253
BssNI	GRCGYC	1 cut(s)	755
BssT1I	CCWWGG	5 cut(s)	380, 533, 609, 760, 769
Bst2UI	CCWGG	4 cut(s)	237, 362, 367, 632
Bst4CI	ACNGT	2 cut(s)	97, 248
BstACI	GRCGYC	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	4 cut(s)	230, 622, 696, 705
BstDEI	CTNAG	4 cut(s)	132, 447, 504, 684
BstDSI	CCRYGG	2 cut(s)	316, 380
BstF5I	GGATG	3 cut(s)	312, 470, 627
BstKTI	GATC	2 cut(s)	177, 256
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	2 cut(s)	174, 253
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	7 cut(s)	111, 158, 335, 621, 700, 704, 713
BstNI	CCWGG	4 cut(s)	237, 362, 367, 632
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	8 cut(s)	177, 235, 276, 360, 365, 585, 586, 630
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	3 cut(s)	76, 139, 142
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BstZI	CGGCCG	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	6 cut(s)	47, 77, 321, 360, 365, 527
BtgI	CCRYGG	2 cut(s)	316, 380
BtsCI	GGATG	3 cut(s)	312, 470, 627
BtsI	GCAGTG	2 cut(s)	27, 434
BtsIMutI	CAGTG	3 cut(s)	27, 412, 434
Cac8I	GCNNGC	4 cut(s)	230, 622, 696, 705
Cfr10I	RCCGGY	3 cut(s)	14, 321, 620
Cfr13I	GGNCC	3 cut(s)	274, 525, 537
Cfr9I	CCCGGG	1 cut(s)	586
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	1 cut(s)	295
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	3 cut(s)	381, 460, 695
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	4 cut(s)	132, 447, 504, 684
DpnI	GATC	2 cut(s)	176, 255
DpnII	GATC	2 cut(s)	174, 253
EaeI	YGGCCR	2 cut(s)	319, 358
EagI	CGGCCG	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	310
EclXI	CGGCCG	1 cut(s)	319
Eco130I	CCWWGG	5 cut(s)	380, 533, 609, 760, 769
Eco147I	AGGCCT	2 cut(s)	77, 365
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	274, 537
Eco52I	CGGCCG	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	310
Eco88I	CYCGRG	2 cut(s)	212, 586
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	4 cut(s)	235, 360, 365, 630
EcoT14I	CCWWGG	5 cut(s)	380, 533, 609, 760, 769
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	5 cut(s)	380, 533, 609, 760, 769
FaeI	CATG	3 cut(s)	384, 463, 698
FaiI	YATR	6 cut(s)	55, 382, 461, 696, 710, 719
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	3 cut(s)	380, 459, 694
Fnu4HI	GCNGC	9 cut(s)	6, 45, 90, 153, 156, 159, 193, 196, 336
FokI	GGATG	3 cut(s)	299, 477, 614
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	9 cut(s)	6, 45, 90, 153, 156, 159, 193, 196, 336
FspBI	CTAG	2 cut(s)	260, 266
GluI	GCNGC	9 cut(s)	6, 45, 90, 153, 156, 159, 193, 196, 336
GsaI	CCCAGC	1 cut(s)	744
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	6 cut(s)	47, 77, 321, 360, 365, 527
HapII	CCGG	8 cut(s)	15, 179, 278, 322, 393, 570, 587, 621
HgaI	GACGC	1 cut(s)	763
Hin1I	GRCGYC	1 cut(s)	755
Hin1II	CATG	3 cut(s)	384, 463, 698
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	8 cut(s)	15, 179, 278, 322, 393, 570, 587, 621
HphI	GGTGA	2 cut(s)	251, 408
Hpy166II	GTNNAC	2 cut(s)	490, 643
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	1 cut(s)	650
Hpy8I	GTNNAC	2 cut(s)	490, 643
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	3 cut(s)	58, 430, 436
HpyCH4III	ACNGT	2 cut(s)	97, 248
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	2 cut(s)	20, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	111, 158, 335, 621, 700, 704, 713
HpyF3I	CTNAG	4 cut(s)	132, 447, 504, 684
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	1 cut(s)	755
Hsp92II	CATG	3 cut(s)	384, 463, 698
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	174, 253
LmnI	GCTCC	3 cut(s)	307, 395, 629
Lsp1109I	GCAGC	3 cut(s)	76, 139, 142
MaeI	CTAG	2 cut(s)	260, 266
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	176, 255
MboI	GATC	2 cut(s)	174, 253
MboII	GAAGA	1 cut(s)	592
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	27, 312, 769
MlsI	TGGCCA	1 cut(s)	360
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	2 cut(s)	79, 645
MnlI	CCTC	5 cut(s)	53, 129, 295, 296, 556
Mox20I	TGGCCA	1 cut(s)	360
MroNI	GCCGGC	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	2 cut(s)	186, 690
Msp20I	TGGCCA	1 cut(s)	360
MspI	CCGG	8 cut(s)	15, 179, 278, 322, 393, 570, 587, 621
MspR9I	CCNGG	8 cut(s)	179, 237, 278, 362, 367, 587, 588, 632
MvaI	CCWGG	4 cut(s)	237, 362, 367, 632
MwoI	GCNNNNNNNGC	7 cut(s)	111, 158, 335, 621, 700, 704, 713
NaeI	GCCGGC	1 cut(s)	622
NciI	CCSGG	4 cut(s)	179, 278, 587, 588
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	2 cut(s)	174, 253
NgoMIV	GCCGGC	1 cut(s)	620
NlaIII	CATG	3 cut(s)	384, 463, 698
NlaIV	GGNNCC	4 cut(s)	176, 276, 625, 766
NmeAIII	GCCGAG	2 cut(s)	20, 420
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	698
PceI	AGGCCT	2 cut(s)	77, 365
PcsI	WCGNNNNNNNCGW	1 cut(s)	642
PdiI	GCCGGC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	534
PfoI	TCCNGGA	1 cut(s)	630
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	9 cut(s)	7, 46, 91, 154, 157, 160, 194, 197, 337
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	4 cut(s)	235, 360, 365, 630
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	4 cut(s)	235, 360, 365, 630
PspN4I	GGNNCC	4 cut(s)	176, 276, 625, 766
PspPI	GGNCC	3 cut(s)	274, 525, 537
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	186, 690
SatI	GCNGC	9 cut(s)	6, 45, 90, 153, 156, 159, 193, 196, 336
Sau3AI	GATC	2 cut(s)	174, 253
Sau96I	GGNCC	3 cut(s)	274, 525, 537
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	8 cut(s)	179, 237, 278, 362, 367, 587, 588, 632
SduI	GDGCHC	3 cut(s)	27, 312, 769
SfuI	TTCGAA	1 cut(s)	387
SgrAI	CRCCGGYG	1 cut(s)	14
SinI	GGWCC	2 cut(s)	274, 537
SmaI	CCCGGG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	698
SseBI	AGGCCT	2 cut(s)	77, 365
SsiI	CCGC	9 cut(s)	5, 44, 114, 158, 182, 192, 195, 305, 335
SspMI	CTAG	2 cut(s)	260, 266
SstI	GAGCTC	1 cut(s)	312
StuI	AGGCCT	2 cut(s)	77, 365
StyD4I	CCNGG	8 cut(s)	177, 235, 276, 360, 365, 585, 586, 630
StyI	CCWWGG	5 cut(s)	380, 533, 609, 760, 769
TaaI	ACNGT	2 cut(s)	97, 248
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	5 cut(s)	207, 222, 387, 519, 603
TauI	GCSGC	6 cut(s)	8, 47, 161, 195, 198, 338
Tru1I	TTAA	2 cut(s)	186, 690
Tru9I	TTAA	2 cut(s)	186, 690
TscAI	CASTG	3 cut(s)	27, 412, 441
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	3 cut(s)	89, 152, 155
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	130, 193
TspGWI	ACGGA	1 cut(s)	505
TspMI	CCCGGG	1 cut(s)	586
TspRI	CASTG	3 cut(s)	27, 412, 441
Van91I	CCANNNNNTGG	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	274, 537
XceI	RCATGY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmaI	CCCGGG	1 cut(s)	586
XspI	CTAG	2 cut(s)	260, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.