Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011951

Physical Location & Seq

Genomic Coordinates Forward (+)

21867006 .. 21868542

Gene Structure 1537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTGCAACAACTGGTGCAATGCTTAATGGGTTGAACTCCACTTTCTTATGTGGAGGCAAGAGAAGCCAGAGCTTGTTGTCTGCTGGTGCTGCAGCTAGGGTTGGAGGCTCTGTTGTTGCTCCCAAGAGGTTCGTTGTTGTGGCTGCTGCCGCTAAGAAGTCTTGGATTCCCGCCGTCAAAGGTGGCGGCAACTTCATCGACCCCGAGTGGCTAGACGGCTCGCTTCCAGGTGACTATGGTTTCGACCCTCTAGGACTAGGAAAGGATCCAGCCTTCCTCAAGTGGTACAGAGAAGCTGAGCTGATCCACGGGCGGTGGGCAATGACAGCGGTGGTTGGCATCTTTGTAGGGCAAGCATGGAGTGGTGTCCCCTGGTTCCAAGCCGGAGCTGACCCTAGTGCAGTAGCGCCCTTCTCTTTTGGCTCCCTTCTTGGGACTCAGCTCTTGCTCATGGGTTGGGTGGAAAGCAAGAGATGGGTGGACTTCTACAACCCTGAGTCGCAGTCAGTGGAGTGGGCTACACCGTGGTCCAAGACTGCCGAGAACTTTTCCAACTTCACCGGCGAGCAAGGCTACCCAGGAGGCAAGTTTTTCGACCCTTTAGGCTTGGCCGGCACCATCAAGGACGGAGTGTACATCCCGGACACTGAGAAGTTGGAGAGACTGCAGTTGGCTGAGATCAAGCATTCAAGGCTTGCTATGTTGGCTATGCTAATTTTCTACTTTGAAGCTGGACAGGGGAAGACACCCCTTGGTGCTCTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

258

Amino Acids

27.5

Weight (kDa)

6.75

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	69 - 245	5.5e-44	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15820
fragaria_vesca	FvH4_5g30940
malus_domestica	MD08G1220900.v1.1 MD15G1411600.v1.1
prunus_persica	Prupe.1G557800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226291
rosa_laevigata	RLG00000001754 RLG00000027365
rosa_multiflora	Rmu_co8464105.1_g000001 Rmu_sc0002055.1_g000006 Rmu_sc0003972.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233080
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383200 Rh7BG370100 Rh7CG402900 Rh7DG381500
rosa_wichuraiana	Rw0G017540 Rw0G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	617
AciI	CCGC	5 cut(s)	153, 174, 189, 316, 332
AclWI	GGATC	3 cut(s)	263, 276, 301
AcoI	YGGCCR	1 cut(s)	612
AfaI	GTAC	2 cut(s)	290, 638
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	37, 693, 731
AjnI	CCWGG	3 cut(s)	229, 374, 580
AluBI	AGCT	7 cut(s)	75, 98, 299, 304, 392, 445, 734
AluI	AGCT	7 cut(s)	75, 98, 299, 304, 392, 445, 734
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	3 cut(s)	263, 276, 301
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	5 cut(s)	5, 92, 95, 146, 149
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	245, 553
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	4 cut(s)	79, 107, 133, 136
BccI	CCATC	2 cut(s)	471, 629
BceAI	ACGGC	2 cut(s)	161, 235
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 577, 611
BciT130I	CCWGG	3 cut(s)	231, 376, 582
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	5 cut(s)	99, 215, 254, 260, 399
BfmI	CTRYAG	2 cut(s)	93, 668
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	7 cut(s)	6, 93, 96, 147, 150, 153, 190
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	7 cut(s)	7, 94, 97, 148, 151, 154, 191
Bme1390I	CCNGG	4 cut(s)	231, 376, 582, 644
Bme18I	GGWCC	1 cut(s)	531
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	4 cut(s)	270, 380, 427, 619
BmrFI	CCNGG	4 cut(s)	231, 376, 582, 644
BmsI	GCATC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	752
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	644
BsaJI	CCNNGG	5 cut(s)	310, 374, 527, 580, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse118I	RCCGGY	2 cut(s)	563, 614
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	2 cut(s)	27, 330
BseBI	CCWGG	3 cut(s)	231, 376, 582
BseDI	CCNNGG	5 cut(s)	310, 374, 527, 580, 754
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	2 cut(s)	27, 330
BseMII	CTCAG	5 cut(s)	291, 455, 489, 642, 669
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	4 cut(s)	79, 107, 133, 136
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	614
BshNI	GGYRCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	4 cut(s)	387, 564, 615, 644
BslFI	GGGAC	2 cut(s)	356, 451
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	2 cut(s)	356, 451
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	3 cut(s)	268, 306, 681
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	5 cut(s)	153, 174, 189, 316, 332
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	5 cut(s)	292, 454, 490, 643, 670
BspLI	GGNNCC	4 cut(s)	270, 380, 427, 619
BspMAI	CTGCAG	2 cut(s)	97, 672
BspPI	GGATC	3 cut(s)	263, 276, 301
BspT107I	GGYRCC	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	27, 330
BsrFI	RCCGGY	2 cut(s)	563, 614
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	2 cut(s)	563, 614
BssECI	CCNNGG	5 cut(s)	310, 374, 527, 580, 754
BssMI	GATC	3 cut(s)	268, 306, 681
BssT1I	CCWWGG	1 cut(s)	754
Bst2UI	CCWGG	3 cut(s)	231, 376, 582
Bst4CI	ACNGT	1 cut(s)	528
BstAUI	TGTACA	1 cut(s)	636
BstC8I	GCNNGC	5 cut(s)	224, 357, 569, 616, 699
BstDEI	CTNAG	6 cut(s)	156, 300, 441, 498, 651, 678
BstDSI	CCRYGG	2 cut(s)	310, 527
BstF5I	GGATG	1 cut(s)	639
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	3 cut(s)	271, 309, 684
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	3 cut(s)	268, 306, 681
BstMWI	GCNNNNNNNGC	8 cut(s)	66, 92, 152, 329, 573, 615, 694, 707
BstNI	CCWGG	3 cut(s)	231, 376, 582
BstSCI	CCNGG	4 cut(s)	229, 374, 580, 642
BstSFI	CTRYAG	2 cut(s)	93, 668
BstV1I	GCAGC	4 cut(s)	79, 107, 133, 136
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	2 cut(s)	310, 527
BtsCI	GGATG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	516, 648
Cac8I	GCNNGC	5 cut(s)	224, 357, 569, 616, 699
CfoI	GCGC	1 cut(s)	412
Cfr10I	RCCGGY	2 cut(s)	563, 614
Cfr13I	GGNCC	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	289, 637
CviAII	CATG	2 cut(s)	360, 454
CviQI	GTAC	2 cut(s)	289, 637
DdeI	CTNAG	6 cut(s)	156, 300, 441, 498, 651, 678
DpnI	GATC	3 cut(s)	270, 308, 683
DpnII	GATC	3 cut(s)	268, 306, 681
EaeI	YGGCCR	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	229, 374, 580
EcoT14I	CCWWGG	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	2 cut(s)	363, 457
FaiI	YATR	6 cut(s)	52, 240, 361, 455, 704, 713
FaqI	GGGAC	2 cut(s)	356, 451
FatI	CATG	2 cut(s)	359, 453
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	7 cut(s)	6, 93, 96, 147, 150, 153, 190
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	7 cut(s)	6, 93, 96, 147, 150, 153, 190
FspBI	CTAG	5 cut(s)	99, 215, 254, 260, 399
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	7 cut(s)	6, 93, 96, 147, 150, 153, 190
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	4 cut(s)	387, 564, 615, 644
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	2 cut(s)	363, 457
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HinfI	GANTC	3 cut(s)	169, 439, 500
HpaII	CCGG	4 cut(s)	387, 564, 615, 644
HphI	GGTGA	2 cut(s)	245, 553
Hpy166II	GTNNAC	2 cut(s)	484, 637
Hpy8I	GTNNAC	2 cut(s)	484, 637
HpyAV	CCTTC	3 cut(s)	286, 424, 440
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4V	TGCA	5 cut(s)	8, 20, 95, 404, 670
HpyF10VI	GCNNNNNNNGC	8 cut(s)	66, 92, 152, 329, 573, 615, 694, 707
HpyF3I	CTNAG	6 cut(s)	156, 300, 441, 498, 651, 678
Hsp92II	CATG	2 cut(s)	363, 457
HspAI	GCGC	1 cut(s)	410
KroI	GCCGGC	1 cut(s)	614
KroNI	GCCGGC	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	268, 306, 681
LmnI	GCTCC	3 cut(s)	127, 389, 431
Lsp1109I	GCAGC	4 cut(s)	79, 107, 133, 136
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	5 cut(s)	99, 215, 254, 260, 399
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	3 cut(s)	270, 308, 683
MboI	GATC	3 cut(s)	268, 306, 681
MboII	GAAGA	1 cut(s)	757
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	1 cut(s)	717
MlyI	GAGTC	2 cut(s)	433, 509
MmeI	TCCRAC	3 cut(s)	85, 579, 639
MnlI	CCTC	6 cut(s)	50, 101, 123, 261, 290, 578
MroNI	GCCGGC	1 cut(s)	614
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	4 cut(s)	387, 564, 615, 644
MspR9I	CCNGG	4 cut(s)	231, 376, 582, 644
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	3 cut(s)	231, 376, 582
MwoI	GCNNNNNNNGC	8 cut(s)	66, 92, 152, 329, 573, 615, 694, 707
NaeI	GCCGGC	1 cut(s)	616
NciI	CCSGG	1 cut(s)	644
NdeII	GATC	3 cut(s)	268, 306, 681
NgoMIV	GCCGGC	1 cut(s)	614
NlaIII	CATG	2 cut(s)	363, 457
NlaIV	GGNNCC	4 cut(s)	270, 380, 427, 619
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	688
PdiI	GCCGGC	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	7 cut(s)	7, 94, 97, 148, 151, 154, 191
PleI	GAGTC	2 cut(s)	433, 508
PpsI	GAGTC	2 cut(s)	433, 508
Psp6I	CCWGG	3 cut(s)	229, 374, 580
PspGI	CCWGG	3 cut(s)	229, 374, 580
PspN4I	GGNNCC	4 cut(s)	270, 380, 427, 619
PspPI	GGNCC	1 cut(s)	531
PstI	CTGCAG	2 cut(s)	97, 672
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	290, 638
RsaNI	GTAC	2 cut(s)	289, 637
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	7 cut(s)	6, 93, 96, 147, 150, 153, 190
Sau3AI	GATC	3 cut(s)	268, 306, 681
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	2 cut(s)	433, 509
ScrFI	CCNGG	4 cut(s)	231, 376, 582, 644
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	2 cut(s)	93, 668
SgrAI	CRCCGGYG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	717
SsiI	CCGC	5 cut(s)	153, 174, 189, 316, 332
SspMI	CTAG	5 cut(s)	99, 215, 254, 260, 399
StyD4I	CCNGG	4 cut(s)	229, 374, 580, 642
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	1 cut(s)	528
TaqI	TCGA	3 cut(s)	201, 246, 597
TasI	AATT	1 cut(s)	717
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	2 cut(s)	155, 192
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	516, 655
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	5 cut(s)	5, 92, 95, 146, 149
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	2 cut(s)	516, 655
VpaK11BI	GGWCC	1 cut(s)	531
XspI	CTAG	5 cut(s)	99, 215, 254, 260, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.