Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011951

Physical Location & Seq

Genomic Coordinates Reverse (-)

45537527 .. 45538766

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G557800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCAGCAACAACTGGTGCAGTGCTTAATGGGTTGAACTCACCCTTCTTGTGCGGAGGCAAGAGAAGCCAGGCCTTGTTGTCTGCTGGTTTTGGAACCACCAGAGTTGGAGGCGGCCCTGCTGCTCCTAAGAGGTTCATTGTGGTTGCTGCTGCTGCACCTAAGAAGTCTTGGATCCCAGCCGTTAAAGCCAGCAACAACTTCATCGATCCTGAGTGGCTCGATGGCTCGCTTCCAGGTGACTACGGTTTCGACCCTCTAGGACTAGGCAAGGACCCAGGGTTCCTAAAGTGGTACAGAGAGGCTGAGCTCATCCACGGACGGTGGGCAATGGCCGCCGTGGTCGGCATCTTTGTAGGCCAGGCCTGGAGTGGTGTCCCATGGTTCGAAGCCGGGGCAGACCCCAGCGCTATAGCACCCTTCTCCTTTGGCTCACTGCTTGGCACTCAGCTCTTGCTCATGGGTTGGGTGGAAAGCAAAAGATGGGTGGACTTCTACAACCCTGAGTCCCAGTCCATTGAGTGGGCCACACCTTGGTCCAAGACTTCGGAGAACTTTGCCAACGCCACCGGAGAGCAAGGCTACCCTGGTGGCAAGTTCTTCGACCCCTTGGGCTTCGCCGGCTCCATCAAGAACGGAGTCTACATTCCAGACAGCGAAAAGTTGGAGAGACTGAAATTGGCCGAGATTAAGCATGCAAGGCTTGCTATGGTGGCTATGCTAATTTTCTATTTTGAAGCTGGACAGGGGAAGACACCCCTTGGAGCTCTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

260

Amino Acids

27.68

Weight (kDa)

7.78

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15820
fragaria_vesca	FvH4_5g30940
malus_domestica	MD08G1220900.v1.1 MD15G1411600.v1.1
prunus_persica	Prupe.1G557800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226291
rosa_laevigata	RLG00000001754 RLG00000027365
rosa_multiflora	Rmu_co8464105.1_g000001 Rmu_sc0002055.1_g000006 Rmu_sc0003972.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233080
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383200 Rh7BG370100 Rh7CG402900 Rh7DG381500
rosa_wichuraiana	Rw0G017540 Rw0G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	522, 534
AccI	GTMKAC	1 cut(s)	642
AciI	CCGC	3 cut(s)	54, 114, 336
AclWI	GGATC	3 cut(s)	169, 182, 203
AcoI	YGGCCR	2 cut(s)	333, 681
AfaI	GTAC	1 cut(s)	296
AfeI	AGCGCT	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	522, 534
AgsI	TTSAA	2 cut(s)	37, 737
AjnI	CCWGG	6 cut(s)	69, 235, 277, 360, 365, 586
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	310, 451, 740, 767
AluI	AGCT	4 cut(s)	310, 451, 740, 767
Alw21I	GWGCWC	2 cut(s)	312, 769
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	3 cut(s)	169, 182, 203
Aor51HI	AGCGCT	1 cut(s)	409
AoxI	GGCC	7 cut(s)	72, 115, 333, 358, 363, 525, 681
ApeKI	GCWGC	5 cut(s)	5, 122, 149, 152, 155
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	4 cut(s)	116, 274, 525, 537
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	33, 251
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	2 cut(s)	274, 537
BamHI	GGATCC	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	312, 769
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	2 cut(s)	312, 769
BbvI	GCAGC	5 cut(s)	17, 109, 136, 139, 142
BccI	CCATC	3 cut(s)	218, 477, 635
BceAI	ACGGC	2 cut(s)	167, 323
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	6 cut(s)	71, 237, 279, 362, 367, 588
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	2 cut(s)	260, 266
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	411
BisI	GCNGC	7 cut(s)	6, 115, 123, 150, 153, 156, 336
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	7 cut(s)	7, 116, 124, 151, 154, 157, 337
Bme1390I	CCNGG	7 cut(s)	71, 237, 279, 362, 367, 394, 588
Bme18I	GGWCC	2 cut(s)	274, 537
BmgT120I	GGNCC	4 cut(s)	116, 274, 525, 537
BmiI	GGNNCC	5 cut(s)	97, 176, 276, 284, 625
BmrFI	CCNGG	7 cut(s)	71, 237, 279, 362, 367, 394, 588
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	388
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	394
Bsa29I	ATCGAT	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 534
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	2 cut(s)	19, 511
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	6 cut(s)	71, 237, 279, 362, 367, 588
BseCI	ATCGAT	1 cut(s)	207
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	522, 534
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	204, 297, 461, 495
BseNI	ACTGG	2 cut(s)	19, 511
BseXI	GCAGC	5 cut(s)	17, 109, 136, 139, 142
BseYI	CCCAGC	2 cut(s)	178, 404
BsgI	GTGCAG	2 cut(s)	39, 141
BshFI	GGCC	7 cut(s)	74, 117, 335, 360, 365, 527, 683
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	312, 769
BsiSI	CCGG	3 cut(s)	393, 570, 621
BslFI	GGGAC	2 cut(s)	362, 493
BslI	CCNNNNNNNGG	2 cut(s)	522, 534
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	2 cut(s)	362, 493
BsnI	GGCC	7 cut(s)	74, 117, 335, 360, 365, 527, 683
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	312, 769
Bsp143I	GATC	2 cut(s)	174, 208
Bsp1720I	GCTNAGC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	3 cut(s)	54, 114, 336
BspANI	GGCC	7 cut(s)	74, 117, 335, 360, 365, 527, 683
BspCNI	CTCAG	4 cut(s)	205, 298, 460, 496
BspDI	ATCGAT	1 cut(s)	207
BspLI	GGNNCC	5 cut(s)	97, 176, 276, 284, 625
BspPI	GGATC	3 cut(s)	169, 182, 203
BspT104I	TTCGAA	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	19, 511
BssAI	RCCGGY	1 cut(s)	620
BssMI	GATC	2 cut(s)	174, 208
BssT1I	CCWWGG	4 cut(s)	380, 533, 609, 760
Bst2UI	CCWGG	6 cut(s)	71, 237, 279, 362, 367, 588
Bst4CI	ACNGT	2 cut(s)	248, 324
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	5 cut(s)	193, 230, 622, 696, 705
BstDEI	CTNAG	6 cut(s)	129, 162, 213, 306, 447, 504
BstDSI	CCRYGG	3 cut(s)	316, 339, 380
BstF5I	GGATG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	2 cut(s)	177, 211
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	2 cut(s)	174, 208
BstMWI	GCNNNNNNNGC	8 cut(s)	66, 155, 188, 335, 621, 700, 704, 713
BstNI	CCWGG	6 cut(s)	71, 237, 279, 362, 367, 588
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	7 cut(s)	69, 235, 277, 360, 365, 392, 586
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	5 cut(s)	17, 109, 136, 139, 142
BstV2I	GAAGAC	1 cut(s)	758
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	7 cut(s)	74, 117, 335, 360, 365, 527, 683
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	3 cut(s)	316, 339, 380
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	2 cut(s)	27, 434
BtsIMutI	CAGTG	2 cut(s)	27, 434
Cac8I	GCNNGC	5 cut(s)	193, 230, 622, 696, 705
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	4 cut(s)	116, 274, 525, 537
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	295
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	3 cut(s)	381, 460, 695
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	6 cut(s)	129, 162, 213, 306, 447, 504
DpnI	GATC	2 cut(s)	176, 210
DpnII	GATC	2 cut(s)	174, 208
EaeI	YGGCCR	2 cut(s)	333, 681
Ecl136II	GAGCTC	2 cut(s)	310, 767
Eco130I	CCWWGG	4 cut(s)	380, 533, 609, 760
Eco147I	AGGCCT	2 cut(s)	74, 365
Eco24I	GRGCYC	2 cut(s)	312, 769
Eco47I	GGWCC	2 cut(s)	274, 537
Eco47III	AGCGCT	1 cut(s)	409
Eco53kI	GAGCTC	2 cut(s)	310, 767
EcoICRI	GAGCTC	2 cut(s)	310, 767
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	6 cut(s)	69, 235, 277, 360, 365, 586
EcoT14I	CCWWGG	4 cut(s)	380, 533, 609, 760
EcoT38I	GRGCYC	2 cut(s)	312, 769
ErhI	CCWWGG	4 cut(s)	380, 533, 609, 760
FaeI	CATG	3 cut(s)	384, 463, 698
FaiI	YATR	6 cut(s)	382, 413, 461, 696, 710, 719
FaqI	GGGAC	2 cut(s)	362, 493
FatI	CATG	3 cut(s)	380, 459, 694
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	7 cut(s)	6, 115, 123, 150, 153, 156, 336
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	2 cut(s)	312, 769
Fsp4HI	GCNGC	7 cut(s)	6, 115, 123, 150, 153, 156, 336
FspBI	CTAG	2 cut(s)	260, 266
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	7 cut(s)	6, 115, 123, 150, 153, 156, 336
GsaI	CCCAGC	2 cut(s)	182, 408
GsuI	CTGGAG	1 cut(s)	388
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	7 cut(s)	74, 117, 335, 360, 365, 527, 683
HapII	CCGG	3 cut(s)	393, 570, 621
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	3 cut(s)	384, 463, 698
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	506, 639
HpaII	CCGG	3 cut(s)	393, 570, 621
HphI	GGTGA	2 cut(s)	33, 251
Hpy166II	GTNNAC	2 cut(s)	490, 643
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	3 cut(s)	212, 631, 650
Hpy8I	GTNNAC	2 cut(s)	490, 643
HpyAV	CCTTC	2 cut(s)	55, 430
HpyCH4III	ACNGT	2 cut(s)	248, 324
HpyCH4V	TGCA	3 cut(s)	20, 158, 698
HpyF10VI	GCNNNNNNNGC	8 cut(s)	66, 155, 188, 335, 621, 700, 704, 713
HpyF3I	CTNAG	6 cut(s)	129, 162, 213, 306, 447, 504
Hsp92II	CATG	3 cut(s)	384, 463, 698
HspAI	GCGC	1 cut(s)	408
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	174, 208
LmnI	GCTCC	3 cut(s)	130, 629, 764
Lsp1109I	GCAGC	5 cut(s)	17, 109, 136, 139, 142
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	2 cut(s)	260, 266
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	176, 210
MboI	GATC	2 cut(s)	174, 208
MboII	GAAGA	2 cut(s)	592, 763
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	2 cut(s)	312, 769
MluCI	AATT	2 cut(s)	677, 723
MlyI	GAGTC	2 cut(s)	515, 648
MmeI	TCCRAC	2 cut(s)	88, 645
MnlI	CCTC	5 cut(s)	50, 104, 126, 267, 295
MroNI	GCCGGC	1 cut(s)	620
MseI	TTAA	3 cut(s)	27, 186, 690
MspI	CCGG	3 cut(s)	393, 570, 621
MspR9I	CCNGG	7 cut(s)	71, 237, 279, 362, 367, 394, 588
MvaI	CCWGG	6 cut(s)	71, 237, 279, 362, 367, 588
MwoI	GCNNNNNNNGC	8 cut(s)	66, 155, 188, 335, 621, 700, 704, 713
NaeI	GCCGGC	1 cut(s)	622
NciI	CCSGG	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	2 cut(s)	174, 208
NgoMIV	GCCGGC	1 cut(s)	620
NlaIII	CATG	3 cut(s)	384, 463, 698
NlaIV	GGNNCC	5 cut(s)	97, 176, 276, 284, 625
NmeAIII	GCCGAG	1 cut(s)	709
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	698
PasI	CCCWGGG	1 cut(s)	278
PceI	AGGCCT	2 cut(s)	74, 365
PdiI	GCCGGC	1 cut(s)	622
PflMI	CCANNNNNTGG	2 cut(s)	522, 534
PkrI	GCNGC	7 cut(s)	7, 116, 124, 151, 154, 157, 337
PleI	GAGTC	2 cut(s)	514, 647
PpsI	GAGTC	2 cut(s)	514, 647
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	2 cut(s)	312, 769
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	6 cut(s)	69, 235, 277, 360, 365, 586
PspFI	CCCAGC	2 cut(s)	178, 404
PspGI	CCWGG	6 cut(s)	69, 235, 277, 360, 365, 586
PspN4I	GGNNCC	5 cut(s)	97, 176, 276, 284, 625
PspPI	GGNCC	4 cut(s)	116, 274, 525, 537
PspPPI	RGGWCCY	1 cut(s)	274
PsrI	GAACNNNNNNTAC	2 cut(s)	626, 658
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	2 cut(s)	312, 769
SaqAI	TTAA	3 cut(s)	27, 186, 690
SatI	GCNGC	7 cut(s)	6, 115, 123, 150, 153, 156, 336
Sau3AI	GATC	2 cut(s)	174, 208
Sau96I	GGNCC	4 cut(s)	116, 274, 525, 537
SchI	GAGTC	2 cut(s)	515, 648
ScrFI	CCNGG	7 cut(s)	71, 237, 279, 362, 367, 394, 588
SduI	GDGCHC	2 cut(s)	312, 769
SetI	ASST	8 cut(s)	137, 163, 241, 312, 453, 535, 742, 769
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	2 cut(s)	274, 537
SphI	GCATGC	1 cut(s)	698
Sse9I	AATT	2 cut(s)	677, 723
SseBI	AGGCCT	2 cut(s)	74, 365
SsiI	CCGC	3 cut(s)	54, 114, 336
SspMI	CTAG	2 cut(s)	260, 266
SstI	GAGCTC	2 cut(s)	312, 769
StuI	AGGCCT	2 cut(s)	74, 365
StyD4I	CCNGG	7 cut(s)	69, 235, 277, 360, 365, 392, 586
StyI	CCWWGG	4 cut(s)	380, 533, 609, 760
TaaI	ACNGT	2 cut(s)	248, 324
TaqI	TCGA	5 cut(s)	207, 222, 252, 387, 603
TasI	AATT	2 cut(s)	677, 723
TauI	GCSGC	2 cut(s)	117, 338
Tru1I	TTAA	3 cut(s)	27, 186, 690
Tru9I	TTAA	3 cut(s)	27, 186, 690
TscAI	CASTG	2 cut(s)	27, 441
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	5 cut(s)	5, 122, 149, 152, 155
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	127, 193
TspGWI	ACGGA	2 cut(s)	333, 651
TspRI	CASTG	2 cut(s)	27, 441
Van91I	CCANNNNNTGG	2 cut(s)	522, 534
VpaK11BI	GGWCC	2 cut(s)	274, 537
XceI	RCATGY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	2 cut(s)	260, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.