Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00784

Orthogroup ID

OG0011951

Physical Location & Seq

Genomic Coordinates Reverse (-)

26381 .. 27230

Gene Structure 850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTGCAACAACTGGTGCAATGCTTAATGGGTTGAACTCCACTTTCTTATGTGGAGGCAAGAGAAGCCAGAGCTTGTTGTCTGCTGGTGCTGCGGCTAGAGTTGGAGGCTCTGTTGCTCCCAAGAGGTTCATTGTTGTGGCTGCTGTGGCTTCCAAGAAGTCTTGGATCCCCGGCGTTAGAGGCGGTGGCAACTTCATCAACCCCGAGTGGCTCGATGGCTCGCTTCCAGGTGACTATGGTTTCGACCCTCTGGGACTAGGCAGGGATCCGGCCTTCCTCAAGTGGTACAGAGCGGTGGTGGGCATCTTTGTAGGGCAGGCCTGGAGTGGTGTCCCCTGGTTCGAAGCCGGAGCTGACCCCAGTGCAATAGCACCCTTCTCCTTCGGCTCCCTTCTTGGGACTCAGCTCCTGCTCATGGGTTGGGTGGAAAGCAAAAGATGGGTGGACTTCTACAACCCTGAGTCGCAGTCTGTGGAGTGGGCTACACCATGGTCCAAGACTGCCGAGAACTTTTCCAACTCCACCGGAGAGCAAGGCTACCCGGGAGGCAAGTTCTTCGATCCCTTGGGCTTCGCCGGCTCCATCAAGGACGGAGTTTACATCCCGGACACTGAGAAGTTGGAGAGACTGAAATTGGCTGAGATCAAGCATGCAAGGCTTGCTATGGTGGCTATGCTTATTTTCTACTTTGAGGCTGGACAGGGGAAGACACCCCTTGGTGCTCTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

245

Amino Acids

26.12

Weight (kDa)

8.61

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	69 - 233	1.5e-26	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15820
fragaria_vesca	FvH4_5g30940
malus_domestica	MD08G1220900.v1.1 MD15G1411600.v1.1
prunus_persica	Prupe.1G557800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226291
rosa_laevigata	RLG00000001754 RLG00000027365
rosa_multiflora	Rmu_co8464105.1_g000001 Rmu_sc0002055.1_g000006 Rmu_sc0003972.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233080
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383200 Rh7BG370100 Rh7CG402900 Rh7DG381500
rosa_wichuraiana	Rw0G017540 Rw0G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	296
AciI	CCGC	3 cut(s)	95, 186, 296
AclWI	GGATC	5 cut(s)	163, 176, 263, 276, 557
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	399, 418
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	229, 323, 338
AluBI	AGCT	3 cut(s)	75, 356, 409
AluI	AGCT	3 cut(s)	75, 356, 409
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	5 cut(s)	163, 176, 263, 276, 557
AlwNI	CAGNNNCTG	1 cut(s)	412
Ama87I	CYCGRG	2 cut(s)	206, 544
AoxI	GGCC	2 cut(s)	273, 321
ApeKI	GCWGC	3 cut(s)	5, 92, 143
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	1 cut(s)	495
AsuC2I	CCSGG	4 cut(s)	174, 545, 546, 608
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	345
AvaI	CYCGRG	2 cut(s)	206, 544
AvaII	GGWCC	1 cut(s)	495
BamHI	GGATCC	2 cut(s)	168, 268
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	2 cut(s)	79, 130
BccI	CCATC	3 cut(s)	212, 435, 593
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	3 cut(s)	231, 325, 340
BcnI	CCSGG	4 cut(s)	174, 545, 546, 608
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	2 cut(s)	99, 260
BisI	GCNGC	4 cut(s)	6, 93, 96, 144
BlsI	GCNGC	4 cut(s)	7, 94, 97, 145
Bme1390I	CCNGG	7 cut(s)	174, 231, 325, 340, 545, 546, 608
Bme18I	GGWCC	1 cut(s)	495
BmeT110I	CYCGRG	2 cut(s)	206, 544
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	4 cut(s)	170, 270, 391, 583
BmrFI	CCNGG	7 cut(s)	174, 231, 325, 340, 545, 546, 608
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	346
Bpu14I	TTCGAA	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	4 cut(s)	174, 545, 546, 608
BsaJI	CCNNGG	6 cut(s)	172, 338, 491, 544, 567, 718
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 418
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	19, 363
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	3 cut(s)	231, 325, 340
BseDI	CCNNGG	6 cut(s)	172, 338, 491, 544, 567, 718
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	399, 418
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	419, 453, 606, 633
BseNI	ACTGG	2 cut(s)	19, 363
BseXI	GCAGC	2 cut(s)	79, 130
BshFI	GGCC	2 cut(s)	275, 323
BsiHKAI	GWGCWC	1 cut(s)	727
BsiHKCI	CYCGRG	2 cut(s)	206, 544
BsiSI	CCGG	7 cut(s)	174, 272, 351, 528, 545, 579, 608
BslFI	GGGAC	3 cut(s)	270, 320, 415
BslI	CCNNNNNNNGG	2 cut(s)	399, 418
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	3 cut(s)	270, 320, 415
BsnI	GGCC	2 cut(s)	275, 323
BsoBI	CYCGRG	2 cut(s)	206, 544
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	4 cut(s)	168, 268, 562, 645
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	3 cut(s)	95, 186, 296
BspANI	GGCC	2 cut(s)	275, 323
BspCNI	CTCAG	4 cut(s)	418, 454, 607, 634
BspLI	GGNNCC	4 cut(s)	170, 270, 391, 583
BspPI	GGATC	5 cut(s)	163, 176, 263, 276, 557
BspT104I	TTCGAA	1 cut(s)	345
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	2 cut(s)	19, 363
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	6 cut(s)	172, 338, 491, 544, 567, 718
BssMI	GATC	4 cut(s)	168, 268, 562, 645
BssT1I	CCWWGG	3 cut(s)	491, 567, 718
Bst2UI	CCWGG	3 cut(s)	231, 325, 340
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	5 cut(s)	224, 321, 580, 654, 663
BstDEI	CTNAG	4 cut(s)	405, 462, 615, 642
BstDSI	CCRYGG	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	4 cut(s)	171, 271, 565, 648
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	4 cut(s)	168, 268, 562, 645
BstMWI	GCNNNNNNNGC	8 cut(s)	66, 92, 149, 183, 579, 658, 662, 671
BstNI	CCWGG	3 cut(s)	231, 325, 340
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	7 cut(s)	172, 229, 323, 338, 543, 544, 606
BstV1I	GCAGC	2 cut(s)	79, 130
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	168, 268
BstYI	RGATCY	2 cut(s)	168, 268
BsuRI	GGCC	2 cut(s)	275, 323
BtgI	CCRYGG	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	370, 612
Cac8I	GCNNGC	5 cut(s)	224, 321, 580, 654, 663
CaiI	CAGNNNCTG	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	495
Cfr9I	CCCGGG	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	418, 492, 653
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	4 cut(s)	405, 462, 615, 642
DpnI	GATC	4 cut(s)	170, 270, 564, 647
DpnII	GATC	4 cut(s)	168, 268, 562, 645
Eco130I	CCWWGG	3 cut(s)	491, 567, 718
Eco147I	AGGCCT	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	495
Eco88I	CYCGRG	2 cut(s)	206, 544
EcoRII	CCWGG	3 cut(s)	229, 323, 338
EcoT14I	CCWWGG	3 cut(s)	491, 567, 718
ErhI	CCWWGG	3 cut(s)	491, 567, 718
FaeI	CATG	3 cut(s)	421, 495, 656
FaiI	YATR	7 cut(s)	52, 240, 419, 493, 654, 668, 677
FaqI	GGGAC	3 cut(s)	270, 320, 415
FatI	CATG	3 cut(s)	417, 491, 652
Fnu4HI	GCNGC	4 cut(s)	6, 93, 96, 144
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	4 cut(s)	6, 93, 96, 144
FspBI	CTAG	2 cut(s)	99, 260
GluI	GCNGC	4 cut(s)	6, 93, 96, 144
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	275, 323
HapII	CCGG	7 cut(s)	174, 272, 351, 528, 545, 579, 608
Hin1II	CATG	3 cut(s)	421, 495, 656
HinfI	GANTC	2 cut(s)	403, 464
HpaII	CCGG	7 cut(s)	174, 272, 351, 528, 545, 579, 608
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	448, 601
Hpy8I	GTNNAC	2 cut(s)	448, 601
HpyAV	CCTTC	4 cut(s)	286, 388, 394, 404
HpyCH4V	TGCA	4 cut(s)	8, 20, 368, 656
HpyF10VI	GCNNNNNNNGC	8 cut(s)	66, 92, 149, 183, 579, 658, 662, 671
HpyF3I	CTNAG	4 cut(s)	405, 462, 615, 642
Hsp92II	CATG	3 cut(s)	421, 495, 656
KroI	GCCGGC	1 cut(s)	578
KroNI	GCCGGC	1 cut(s)	580
Kzo9I	GATC	4 cut(s)	168, 268, 562, 645
LmnI	GCTCC	5 cut(s)	124, 353, 395, 414, 587
Lsp1109I	GCAGC	2 cut(s)	79, 130
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	99, 260
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	170, 270, 564, 647
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	4 cut(s)	168, 268, 562, 645
MboII	GAAGA	2 cut(s)	550, 721
MflI	RGATCY	2 cut(s)	168, 268
MhlI	GDGCHC	1 cut(s)	727
MluCI	AATT	1 cut(s)	635
MlyI	GAGTC	2 cut(s)	397, 473
MmeI	TCCRAC	3 cut(s)	85, 543, 603
MnlI	CCTC	8 cut(s)	50, 101, 120, 176, 261, 290, 542, 688
MroNI	GCCGGC	1 cut(s)	578
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	7 cut(s)	174, 272, 351, 528, 545, 579, 608
MspR9I	CCNGG	7 cut(s)	174, 231, 325, 340, 545, 546, 608
MvaI	CCWGG	3 cut(s)	231, 325, 340
MwoI	GCNNNNNNNGC	8 cut(s)	66, 92, 149, 183, 579, 658, 662, 671
NaeI	GCCGGC	1 cut(s)	580
NciI	CCSGG	4 cut(s)	174, 545, 546, 608
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	4 cut(s)	168, 268, 562, 645
NgoMIV	GCCGGC	1 cut(s)	578
NlaIII	CATG	3 cut(s)	421, 495, 656
NlaIV	GGNNCC	4 cut(s)	170, 270, 391, 583
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	345
PaeI	GCATGC	1 cut(s)	656
PceI	AGGCCT	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	4 cut(s)	7, 94, 97, 145
PleI	GAGTC	2 cut(s)	397, 472
PpsI	GAGTC	2 cut(s)	397, 472
Psp6I	CCWGG	3 cut(s)	229, 323, 338
PspGI	CCWGG	3 cut(s)	229, 323, 338
PspN4I	GGNNCC	4 cut(s)	170, 270, 391, 583
PspPI	GGNCC	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	168, 268
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	4 cut(s)	6, 93, 96, 144
Sau3AI	GATC	4 cut(s)	168, 268, 562, 645
Sau96I	GGNCC	1 cut(s)	495
SchI	GAGTC	2 cut(s)	397, 473
ScrFI	CCNGG	7 cut(s)	174, 231, 325, 340, 545, 546, 608
SduI	GDGCHC	1 cut(s)	727
SetI	ASST	5 cut(s)	77, 131, 235, 358, 411
SfaNI	GCATC	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	1 cut(s)	495
SmaI	CCCGGG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	1 cut(s)	635
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	3 cut(s)	95, 186, 296
SspMI	CTAG	2 cut(s)	99, 260
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	7 cut(s)	172, 229, 323, 338, 543, 544, 606
StyI	CCWWGG	3 cut(s)	491, 567, 718
TaqI	TCGA	4 cut(s)	216, 246, 345, 561
TasI	AATT	1 cut(s)	635
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	370, 619
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	5, 92, 143
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	121, 187
TspGWI	ACGGA	1 cut(s)	609
TspMI	CCCGGG	1 cut(s)	544
TspRI	CASTG	2 cut(s)	370, 619
VpaK11BI	GGWCC	1 cut(s)	495
XceI	RCATGY	1 cut(s)	656
XmaI	CCCGGG	1 cut(s)	544
XspI	CTAG	2 cut(s)	99, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.