Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464105.1

Orthogroup ID

OG0011951

Physical Location & Seq

Genomic Coordinates Reverse (-)

79 .. 930

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464105.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggctgcaacaactggtgcaatgcttaatgggttgaactccactttcttatgtggaggcaagagaagccagagcttgttgtctgctggtgctgcggctagagttggaggctctgttgctcccaagaggttcattgttgtggctgctgtggcttccaagaagtcttggatccccggcgttagaggcggtggcaacttcatcaaccccgagtggctcgatggctcgcttccaggtgactatggtttcgaccctctgggactaggcaaggatccggccttcctcaagtggtacagagaggctgagctgatccacgggcggtgggcaatggcagcggtggtgggcatctttgtagggcaggcctggagtggtgtcccctggttcgaagccggagctgaccccagtgcaatagcacccttctccttcggctcccttcttgggactcagctcctgctcatgggttgggtggaaagcaaaagatgggtggacttctacaaccctgagtcgcagtctgtggagtgggctacaccatggtccaagactgccgagaacttttccaactccaccggagagcaaggctacccgggaggcaagttcttcgatcccttgggcttcgccggctccatcaaggacggagtttacatcccggacactgagaagttggagagactgaaattggctgagatcaagcatgcaaggcttgctatggtggctatgcttattttctactttgaggctggacaggggaagacaccccttggtgctcttggcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

257

Amino Acids

27.46

Weight (kDa)

7.79

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15820
fragaria_vesca	FvH4_5g30940
malus_domestica	MD08G1220900.v1.1 MD15G1411600.v1.1
prunus_persica	Prupe.1G557800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226291
rosa_laevigata	RLG00000001754 RLG00000027365
rosa_multiflora	Rmu_co8464105.1_g000001 Rmu_sc0002055.1_g000006 Rmu_sc0003972.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233080
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383200 Rh7BG370100 Rh7CG402900 Rh7DG381500
rosa_wichuraiana	Rw0G017540 Rw0G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	95, 186, 316, 332
AclWI	GGATC	6 cut(s)	163, 176, 263, 276, 301, 593
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	435, 454
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	229, 359, 374
AluBI	AGCT	4 cut(s)	75, 304, 392, 445
AluI	AGCT	4 cut(s)	75, 304, 392, 445
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	6 cut(s)	163, 176, 263, 276, 301, 593
AlwNI	CAGNNNCTG	1 cut(s)	448
Ama87I	CYCGRG	2 cut(s)	206, 580
AoxI	GGCC	2 cut(s)	273, 357
ApeKI	GCWGC	4 cut(s)	5, 92, 143, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	4 cut(s)	174, 581, 582, 644
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	2 cut(s)	206, 580
AvaII	GGWCC	1 cut(s)	531
BamHI	GGATCC	2 cut(s)	168, 268
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	3 cut(s)	79, 130, 341
BccI	CCATC	3 cut(s)	212, 471, 629
BcgI	CGANNNNNNTGC	2 cut(s)	577, 611
BciT130I	CCWGG	3 cut(s)	231, 361, 376
BcnI	CCSGG	4 cut(s)	174, 581, 582, 644
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	2 cut(s)	99, 260
BisI	GCNGC	5 cut(s)	6, 93, 96, 144, 330
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	5 cut(s)	7, 94, 97, 145, 331
Bme1390I	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
Bme18I	GGWCC	1 cut(s)	531
BmeT110I	CYCGRG	2 cut(s)	206, 580
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	4 cut(s)	170, 270, 427, 619
BmrFI	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	752
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	4 cut(s)	174, 581, 582, 644
BsaJI	CCNNGG	7 cut(s)	172, 310, 374, 527, 580, 603, 754
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 454
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	19, 399
Bse3DI	GCAATG	2 cut(s)	27, 330
BseBI	CCWGG	3 cut(s)	231, 361, 376
BseDI	CCNNGG	7 cut(s)	172, 310, 374, 527, 580, 603, 754
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	435, 454
BseMI	GCAATG	2 cut(s)	27, 330
BseMII	CTCAG	5 cut(s)	291, 455, 489, 642, 669
BseNI	ACTGG	2 cut(s)	19, 399
BseXI	GCAGC	3 cut(s)	79, 130, 341
BshFI	GGCC	2 cut(s)	275, 359
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	2 cut(s)	206, 580
BsiSI	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
BslFI	GGGAC	3 cut(s)	270, 356, 451
BslI	CCNNNNNNNGG	2 cut(s)	435, 454
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	3 cut(s)	270, 356, 451
BsnI	GGCC	2 cut(s)	275, 359
BsoBI	CYCGRG	2 cut(s)	206, 580
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	5 cut(s)	168, 268, 306, 598, 681
Bsp1720I	GCTNAGC	1 cut(s)	300
Bsp19I	CCATGG	1 cut(s)	527
BspACI	CCGC	4 cut(s)	95, 186, 316, 332
BspANI	GGCC	2 cut(s)	275, 359
BspCNI	CTCAG	5 cut(s)	292, 454, 490, 643, 670
BspLI	GGNNCC	4 cut(s)	170, 270, 427, 619
BspPI	GGATC	6 cut(s)	163, 176, 263, 276, 301, 593
BspT104I	TTCGAA	1 cut(s)	381
BsrDI	GCAATG	2 cut(s)	27, 330
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	19, 399
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	7 cut(s)	172, 310, 374, 527, 580, 603, 754
BssMI	GATC	5 cut(s)	168, 268, 306, 598, 681
BssT1I	CCWWGG	3 cut(s)	527, 603, 754
Bst2UI	CCWGG	3 cut(s)	231, 361, 376
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	5 cut(s)	224, 357, 616, 690, 699
BstDEI	CTNAG	5 cut(s)	300, 441, 498, 651, 678
BstDSI	CCRYGG	2 cut(s)	310, 527
BstF5I	GGATG	1 cut(s)	639
BstKTI	GATC	5 cut(s)	171, 271, 309, 601, 684
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	5 cut(s)	168, 268, 306, 598, 681
BstMWI	GCNNNNNNNGC	9 cut(s)	66, 92, 149, 183, 329, 615, 694, 698, 707
BstNI	CCWGG	3 cut(s)	231, 361, 376
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	7 cut(s)	172, 229, 359, 374, 579, 580, 642
BstV1I	GCAGC	3 cut(s)	79, 130, 341
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	2 cut(s)	168, 268
BstYI	RGATCY	2 cut(s)	168, 268
BsuRI	GGCC	2 cut(s)	275, 359
BtgI	CCRYGG	2 cut(s)	310, 527
BtsCI	GGATG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	406, 648
Cac8I	GCNNGC	5 cut(s)	224, 357, 616, 690, 699
CaiI	CAGNNNCTG	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	531
Cfr9I	CCCGGG	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	454, 528, 689
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	5 cut(s)	300, 441, 498, 651, 678
DpnI	GATC	5 cut(s)	170, 270, 308, 600, 683
DpnII	GATC	5 cut(s)	168, 268, 306, 598, 681
Eco130I	CCWWGG	3 cut(s)	527, 603, 754
Eco147I	AGGCCT	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	531
Eco88I	CYCGRG	2 cut(s)	206, 580
EcoRII	CCWGG	3 cut(s)	229, 359, 374
EcoT14I	CCWWGG	3 cut(s)	527, 603, 754
ErhI	CCWWGG	3 cut(s)	527, 603, 754
FaeI	CATG	3 cut(s)	457, 531, 692
FaiI	YATR	7 cut(s)	52, 240, 455, 529, 690, 704, 713
FaqI	GGGAC	3 cut(s)	270, 356, 451
FatI	CATG	3 cut(s)	453, 527, 688
Fnu4HI	GCNGC	5 cut(s)	6, 93, 96, 144, 330
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	5 cut(s)	6, 93, 96, 144, 330
FspBI	CTAG	2 cut(s)	99, 260
GluI	GCNGC	5 cut(s)	6, 93, 96, 144, 330
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	275, 359
HapII	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
Hin1II	CATG	3 cut(s)	457, 531, 692
HinfI	GANTC	2 cut(s)	439, 500
HpaII	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	484, 637
Hpy8I	GTNNAC	2 cut(s)	484, 637
HpyAV	CCTTC	4 cut(s)	286, 424, 430, 440
HpyCH4V	TGCA	4 cut(s)	8, 20, 404, 692
HpyF10VI	GCNNNNNNNGC	9 cut(s)	66, 92, 149, 183, 329, 615, 694, 698, 707
HpyF3I	CTNAG	5 cut(s)	300, 441, 498, 651, 678
Hsp92II	CATG	3 cut(s)	457, 531, 692
KroI	GCCGGC	1 cut(s)	614
KroNI	GCCGGC	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	168, 268, 306, 598, 681
LmnI	GCTCC	5 cut(s)	124, 389, 431, 450, 623
Lsp1109I	GCAGC	3 cut(s)	79, 130, 341
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	99, 260
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	5 cut(s)	170, 270, 308, 600, 683
MboI	GATC	5 cut(s)	168, 268, 306, 598, 681
MboII	GAAGA	2 cut(s)	586, 757
MflI	RGATCY	2 cut(s)	168, 268
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	1 cut(s)	671
MlyI	GAGTC	2 cut(s)	433, 509
MmeI	TCCRAC	3 cut(s)	85, 579, 639
MnlI	CCTC	9 cut(s)	50, 101, 120, 176, 261, 289, 290, 578, 724
MroNI	GCCGGC	1 cut(s)	614
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
MspR9I	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
MvaI	CCWGG	3 cut(s)	231, 361, 376
MwoI	GCNNNNNNNGC	9 cut(s)	66, 92, 149, 183, 329, 615, 694, 698, 707
NaeI	GCCGGC	1 cut(s)	616
NciI	CCSGG	4 cut(s)	174, 581, 582, 644
NcoI	CCATGG	1 cut(s)	527
NdeII	GATC	5 cut(s)	168, 268, 306, 598, 681
NgoMIV	GCCGGC	1 cut(s)	614
NlaIII	CATG	3 cut(s)	457, 531, 692
NlaIV	GGNNCC	4 cut(s)	170, 270, 427, 619
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	692
NspV	TTCGAA	1 cut(s)	381
PaeI	GCATGC	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	359
PdiI	GCCGGC	1 cut(s)	616
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	5 cut(s)	7, 94, 97, 145, 331
PleI	GAGTC	2 cut(s)	433, 508
PpsI	GAGTC	2 cut(s)	433, 508
Psp6I	CCWGG	3 cut(s)	229, 359, 374
PspGI	CCWGG	3 cut(s)	229, 359, 374
PspN4I	GGNNCC	4 cut(s)	170, 270, 427, 619
PspPI	GGNCC	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	168, 268
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	5 cut(s)	6, 93, 96, 144, 330
Sau3AI	GATC	5 cut(s)	168, 268, 306, 598, 681
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	2 cut(s)	433, 509
ScrFI	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
SduI	GDGCHC	1 cut(s)	763
SetI	ASST	6 cut(s)	77, 131, 235, 306, 394, 447
SfaNI	GCATC	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	531
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	1 cut(s)	671
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	4 cut(s)	95, 186, 316, 332
SspMI	CTAG	2 cut(s)	99, 260
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	7 cut(s)	172, 229, 359, 374, 579, 580, 642
StyI	CCWWGG	3 cut(s)	527, 603, 754
TaqI	TCGA	4 cut(s)	216, 246, 381, 597
TasI	AATT	1 cut(s)	671
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	406, 655
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	4 cut(s)	5, 92, 143, 329
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	121, 187
TspGWI	ACGGA	1 cut(s)	645
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	2 cut(s)	406, 655
VpaK11BI	GGWCC	1 cut(s)	531
XceI	RCATGY	1 cut(s)	692
XmaI	CCCGGG	1 cut(s)	580
XspI	CTAG	2 cut(s)	99, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.