AT1G15900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016224
Physical Location & Seq
Forward (+)
5464273 .. 5464947
675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15900.1

Sequence Viewer

Length: 342 bp
ATGGAGACGCAATTTCATGGCGGCGATGGAGAAGATCCTTGGCTAGCTCGAGACAAACTATACCATGTAATATTCTGCTTCTCAATCTCTCTTATCTTCTCTACTCTCGCCTCTTTCTCCCGCTACTCCTTTCTACGCCGTCACTCCATCTGGATCGGATCTGCTTTCTCACTCGCCGCCGGTGCGGCTAAAGAAGCTGCCGATCAAATTGGTATCTTCCCTTCCGCAGGTGCTTCCGTTAGAGACGCCGTCGCGGACGCCATTGGAGTTGTGATAGCTGCTTTGGTTCTCCTCCTCTGGAAATCTCGAAGATCACGTACCCGACCCATCCTTCCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.35

Weight (kDa)

9.51

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15900
fragaria_vesca FvH4_6g28800
malus_domestica MD16G1196200.v1.1 MD17G1221700.v1.1
prunus_persica Prupe.3G096700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133221
rosa_laevigata RLG00000019322
rosa_multiflora Rmu_sc0023254.1_g000005
rosa_roxburghii Rroxscaffold_2G00111290
rosa_rugosa Rorug02G0310800
rosa_samantha Rh2BG369000 Rh2CG346600 Rh2DG386000
rosa_wichuraiana Rw2G029530 Rw2G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AccII CGCG 1 cut(s) 254
AciI CCGC 6 cut(s) 21, 121, 177, 185, 225, 254
AclWI GGATC 3 cut(s) 29, 161, 166
AcyI GRCGYC 2 cut(s) 246, 258
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 227
AluBI AGCT 3 cut(s) 47, 197, 278
AluI AGCT 3 cut(s) 47, 197, 278
Alw26I GTCTC 2 cut(s) 45, 237
AlwI GGATC 3 cut(s) 29, 161, 166
Ama87I CYCGRG 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 197, 278
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 48
BarI GAAGNNNNNNTAC 4 cut(s) 205, 237, 301, 333
BbvI GCAGC 2 cut(s) 184, 265
BccI CCATC 3 cut(s) 20, 155, 335
BceAI ACGGC 2 cut(s) 123, 233
BcoDI GTCTC 2 cut(s) 45, 237
BfaI CTAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 5 cut(s) 22, 177, 186, 198, 279
BlsI GCNGC 5 cut(s) 23, 178, 187, 199, 280
BmeT110I CYCGRG 1 cut(s) 48
BmtI GCTAGC 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 2 cut(s) 246, 258
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 281, 284
BseXI GCAGC 2 cut(s) 184, 265
Bsh1236I CGCG 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 45, 237
BsmBI CGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 48
Bsp143I GATC 5 cut(s) 34, 153, 158, 202, 311
BspACI CCGC 6 cut(s) 21, 121, 177, 185, 225, 254
BspFNI CGCG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 218
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 3 cut(s) 29, 161, 166
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 5 cut(s) 34, 153, 158, 202, 311
BssNI GRCGYC 2 cut(s) 246, 258
BssT1I CCWWGG 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 246, 258
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 45
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 5 cut(s) 37, 156, 161, 205, 314
BstMAI GTCTC 2 cut(s) 45, 237
BstMBI GATC 5 cut(s) 34, 153, 158, 202, 311
BstMWI GCNNNNNNNGC 3 cut(s) 182, 185, 194
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 184, 265
BstX2I RGATCY 2 cut(s) 34, 158
BstYI RGATCY 2 cut(s) 34, 158
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 179
CseI GACGC 3 cut(s) 16, 254, 266
Csp6I GTAC 1 cut(s) 318
CviAII CATG 2 cut(s) 17, 65
CviJI RGCY 5 cut(s) 43, 47, 188, 197, 278
CviKI_1 RGCY 5 cut(s) 43, 47, 188, 197, 278
CviQI GTAC 1 cut(s) 318
DpnI GATC 5 cut(s) 36, 155, 160, 204, 313
DpnII GATC 5 cut(s) 34, 153, 158, 202, 311
Eco130I CCWWGG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 2 cut(s) 20, 68
FaiI YATR 3 cut(s) 18, 61, 66
FatI CATG 2 cut(s) 16, 64
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 5 cut(s) 22, 177, 186, 198, 279
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 5 cut(s) 22, 177, 186, 198, 279
FspBI CTAG 1 cut(s) 44
GluI GCNGC 5 cut(s) 22, 177, 186, 198, 279
HapII CCGG 1 cut(s) 180
HgaI GACGC 3 cut(s) 16, 254, 266
Hin1I GRCGYC 2 cut(s) 246, 258
Hin1II CATG 2 cut(s) 20, 68
HpaII CCGG 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 158, 336
Hpy188III TCNNGA 4 cut(s) 50, 151, 298, 306
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 231, 341
HpyCH4IV ACGT 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 185, 194
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 2 cut(s) 246, 258
Hsp92II CATG 2 cut(s) 20, 68
Kzo9I GATC 5 cut(s) 34, 153, 158, 202, 311
LpnPI CCDG 4 cut(s) 136, 193, 213, 283
Lsp1109I GCAGC 2 cut(s) 184, 265
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 140
MalI GATC 5 cut(s) 36, 155, 160, 204, 313
MboI GATC 5 cut(s) 34, 153, 158, 202, 311
MboII GAAGA 4 cut(s) 44, 88, 208, 321
MflI RGATCY 2 cut(s) 34, 158
MluCI AATT 2 cut(s) 11, 207
MnlI CCTC 3 cut(s) 121, 302, 305
MspI CCGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 182, 185, 194
NdeII GATC 5 cut(s) 34, 153, 158, 202, 311
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 2 cut(s) 20, 68
NmuCI GTSAC 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 5 cut(s) 23, 178, 187, 199, 280
Ppu21I YACGTR 1 cut(s) 317
PsuI RGATCY 2 cut(s) 34, 158
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SatI GCNGC 5 cut(s) 22, 177, 186, 198, 279
Sau3AI GATC 5 cut(s) 34, 153, 158, 202, 311
SetI ASST 5 cut(s) 49, 199, 232, 280, 319
Sfr274I CTCGAG 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 2 cut(s) 11, 207
SsiI CCGC 6 cut(s) 21, 121, 177, 185, 225, 254
SspI AATATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 38
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 49, 307
TasI AATT 2 cut(s) 11, 207
TauI GCSGC 3 cut(s) 24, 179, 188
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 197, 278
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 225
XhoI CTCGAG 1 cut(s) 48
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.