MD16G1196200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016224
Physical Location & Seq
Reverse (-)
17440762 .. 17441040
279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1196200.v1.1.491

Sequence Viewer

Length: 279 bp
ATGACCCGTGCTTCGATTAGAAGCTCCACCACCCGAACCCAGTACTCATTTCTCCGTCATCACTCTATTTGGTTCGGATCTATCTTGTCTCTCTTAGCTGGCGCAGCCAAGAAGTTCGCTGACGAGCTCGGGTTCTTCAGATATACCAGAGCCTCCGCTAAAGACACCGTCGTCGATTTCGTTGGCGTCCTAATCGGCTCGCTGTTGCTTTATTTTGTTAAGTATGTGACTCGACCCGAGAAGGAGACAGGTCGGATCAGAGAGGTTTCGATGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.45

Weight (kDa)

10.27

Isoelectric Point (pI)

14.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15900
fragaria_vesca FvH4_6g28800
malus_domestica MD16G1196200.v1.1 MD17G1221700.v1.1
prunus_persica Prupe.3G096700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0133221
rosa_laevigata RLG00000019322
rosa_multiflora Rmu_sc0023254.1_g000005
rosa_roxburghii Rroxscaffold_2G00111290
rosa_rugosa Rorug02G0310800
rosa_samantha Rh2BG369000 Rh2CG346600 Rh2DG386000
rosa_wichuraiana Rw2G029530 Rw2G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AciI CCGC 1 cut(s) 156
AclWI GGATC 2 cut(s) 85, 263
AcuI CTGAAG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 44
AluBI AGCT 3 cut(s) 24, 98, 127
AluI AGCT 3 cut(s) 24, 98, 127
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 93, 239
AlwI GGATC 2 cut(s) 85, 263
Ama87I CYCGRG 2 cut(s) 128, 236
ApeKI GCWGC 1 cut(s) 104
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspLEI GCGC 1 cut(s) 104
AvaI CYCGRG 2 cut(s) 128, 236
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 93, 239
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 128, 236
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 2 cut(s) 128, 236
BsmAI GTCTC 2 cut(s) 93, 239
BsoBI CYCGRG 2 cut(s) 128, 236
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 77, 255
BspACI CCGC 1 cut(s) 156
BspPI GGATC 2 cut(s) 85, 263
BsrI ACTGG 1 cut(s) 40
BssMI GATC 2 cut(s) 77, 255
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 100, 200
BstDEI CTNAG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 80, 258
BstMAI GTCTC 2 cut(s) 93, 239
BstMBI GATC 2 cut(s) 77, 255
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 100, 200
CfoI GCGC 1 cut(s) 104
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 43
CviJI RGCY 6 cut(s) 24, 98, 107, 127, 152, 198
CviKI_1 RGCY 6 cut(s) 24, 98, 107, 127, 152, 198
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 94
DpnI GATC 2 cut(s) 79, 257
DpnII GATC 2 cut(s) 77, 255
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 121
Eco88I CYCGRG 2 cut(s) 128, 236
EcoICRI GAGCTC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 129
FaiI YATR 2 cut(s) 144, 225
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 105
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 186
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 229
Hpy188I TCNGA 5 cut(s) 77, 140, 255, 260, 278
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 186
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 77, 255
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 53, 84, 160, 234
Lsp1109I GCAGC 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 79, 257
MboI GATC 2 cut(s) 77, 255
MboII GAAGA 1 cut(s) 127
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 2 cut(s) 163, 256
MseI TTAA 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 77, 255
NmuCI GTSAC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 77, 255
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 26, 100, 129, 253, 267
SsiI CCGC 1 cut(s) 156
SstI GAGCTC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 4 cut(s) 14, 174, 232, 269
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 44
Tth111I GACNNNGTC 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.